Wall clock time and date at job start Tue Mar 31 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47052 * 2 1 4 4 C 1.34232 * 116.99633 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99688 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46848 * 305.00436 * 6 4 3 8 8 O 1.42902 * 109.46996 * 185.00682 * 6 4 3 9 9 C 1.35636 * 117.00147 * 141.65934 * 8 6 4 10 10 C 1.38451 * 120.26715 * 5.47224 * 9 8 6 11 11 C 1.38303 * 120.05478 * 180.02562 * 10 9 8 12 12 C 1.38817 * 120.58960 * 359.97438 * 11 10 9 13 13 C 1.36497 * 120.53973 * 0.03196 * 12 11 10 14 14 C 1.40727 * 119.92581 * 359.67269 * 13 12 11 15 15 C 1.41148 * 120.28733 * 180.32418 * 14 13 12 16 16 H 1.08009 * 120.00174 * 151.16572 * 15 14 13 17 17 C 1.39933 * 120.00308 * 331.16420 * 15 14 13 18 18 N 1.30863 * 119.99982 * 349.57784 * 17 15 14 19 19 Si 1.86798 * 120.00121 * 169.57723 * 17 15 14 20 20 H 1.48503 * 109.47337 * 90.00192 * 19 17 15 21 21 H 1.48500 * 109.47420 * 210.00133 * 19 17 15 22 22 H 1.48504 * 109.47052 * 330.00208 * 19 17 15 23 23 C 1.52995 * 109.47090 * 65.00207 * 6 4 3 24 24 C 1.52994 * 117.50353 * 248.62032 * 23 6 4 25 25 C 1.52996 * 117.49753 * 179.97438 * 23 6 4 26 26 H 1.08998 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47187 * 299.99981 * 1 2 3 28 28 H 1.08996 * 109.47438 * 59.99790 * 1 2 3 29 29 H 1.08996 * 109.46916 * 239.99717 * 2 1 3 30 30 H 1.09002 * 109.46833 * 119.99897 * 2 1 3 31 31 H 1.08001 * 119.97008 * 0.02562 * 10 9 8 32 32 H 1.07994 * 119.70702 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.73208 * 179.97438 * 12 11 10 34 34 H 1.08001 * 120.03407 * 180.02562 * 13 12 11 35 35 H 0.97002 * 119.99857 * 179.97438 * 18 17 15 36 36 H 1.09001 * 115.54867 * 34.33426 * 23 6 4 37 37 H 1.09004 * 117.49372 * 0.02562 * 24 23 6 38 38 H 1.08998 * 117.50340 * 145.01992 * 24 23 6 39 39 H 1.09008 * 117.49846 * 214.98086 * 25 23 6 40 40 H 1.09002 * 117.50138 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5153 3.4979 -0.8423 8 8 5.3431 2.8645 -0.1169 9 6 5.9467 3.8037 -0.8871 10 6 5.2083 4.8429 -1.4274 11 6 5.8282 5.7979 -2.2125 12 6 7.1910 5.7273 -2.4669 13 6 7.9421 4.7133 -1.9465 14 6 7.3353 3.7330 -1.1395 15 6 8.1060 2.6849 -0.5919 16 1 7.8117 2.2292 0.3421 17 6 9.2512 2.2361 -1.2590 18 7 9.4975 2.6388 -2.4796 19 14 10.4286 1.0622 -0.4074 20 1 10.0198 -0.3379 -0.6864 21 1 11.8056 1.2865 -0.9160 22 1 10.3962 1.3047 1.0573 23 6 3.5518 3.6424 1.3067 24 6 2.5661 4.8097 1.2258 25 6 4.0478 5.0767 1.5000 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.1475 4.9077 -1.2355 32 1 5.2468 6.6058 -2.6315 33 1 7.6608 6.4804 -3.0822 34 1 9.0019 4.6665 -2.1493 35 1 10.2916 2.3279 -2.9419 36 1 3.5044 3.0034 2.1885 37 1 2.1801 5.0751 0.2416 38 1 1.8697 4.9387 2.0543 39 1 4.3259 5.3815 2.5090 40 1 4.6374 5.5180 0.6964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230281532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:50 Heat of formation + Delta-G solvation = -87.411810 kcal Electronic energy + Delta-G solvation = -23362.643795 eV Core-core repulsion = 19915.290191 eV Total energy + Delta-G solvation = -3447.353605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95733 -40.64005 -38.56807 -37.76818 -37.02206 -35.48213 -32.79383 -31.72689 -30.85277 -29.49788 -27.03872 -24.52973 -23.48034 -23.10744 -22.80237 -22.55178 -21.21300 -19.74446 -18.81122 -18.28877 -17.85122 -17.70673 -17.11269 -16.49077 -15.95713 -15.92513 -15.56513 -14.98629 -14.77846 -14.53482 -14.41979 -14.20547 -13.67847 -13.48076 -13.27444 -13.06750 -12.94625 -12.79381 -12.60505 -12.53757 -12.36101 -12.15386 -11.94022 -11.75474 -11.60021 -11.58895 -11.44947 -11.11191 -11.09115 -10.98142 -9.34164 -8.87699 -8.54386 -6.26099 0.91446 0.96446 1.01044 1.26455 1.33876 1.45837 1.48908 2.22220 2.47647 2.76135 3.16463 3.41905 3.58662 3.66863 3.76087 3.96631 3.99967 4.05973 4.14557 4.29702 4.32870 4.39740 4.53471 4.68044 4.79926 4.81912 4.91976 4.96826 5.07584 5.08141 5.15117 5.19550 5.28408 5.34388 5.42299 5.43658 5.83972 5.86882 6.15281 6.30000 6.44413 6.61690 6.79209 6.92174 7.16478 8.39027 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.005528 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.219666 B = 5064.211789 C = 6234.940840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.343 6.343 4 C 0.468 3.532 5 O -0.527 6.527 6 C 0.118 3.882 7 H 0.118 0.882 8 O -0.303 6.303 9 C 0.004 3.996 10 C -0.177 4.177 11 C -0.193 4.193 12 C -0.135 4.135 13 C -0.155 4.155 14 C 0.060 3.940 15 C -0.483 4.483 16 H 0.059 0.941 17 C 0.032 3.968 18 N -0.836 5.836 19 Si 0.976 3.024 20 H -0.272 1.272 21 H -0.258 1.258 22 H -0.263 1.263 23 C -0.189 4.189 24 C -0.129 4.129 25 C -0.178 4.178 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.286 0.714 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.004 1.455 4.821 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.260 6.260 4 C 0.311 3.689 5 O -0.415 6.415 6 C 0.060 3.940 7 H 0.136 0.864 8 O -0.218 6.218 9 C -0.040 4.040 10 C -0.196 4.196 11 C -0.212 4.212 12 C -0.154 4.154 13 C -0.175 4.175 14 C 0.058 3.942 15 C -0.514 4.514 16 H 0.077 0.923 17 C -0.180 4.180 18 N -0.464 5.464 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.181 1.181 22 H -0.187 1.187 23 C -0.207 4.207 24 C -0.166 4.166 25 C -0.215 4.215 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.125 0.875 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.554 0.945 4.732 16.286 hybrid contribution 0.977 -1.023 0.066 1.416 sum -14.577 -0.078 4.798 15.347 Atomic orbital electron populations 1.21814 0.89195 1.04593 1.04124 1.23417 0.97773 0.78938 1.02423 1.86482 1.21914 1.34006 1.83609 1.23659 0.81429 0.91921 0.71925 1.90685 1.61494 1.43885 1.45443 1.21287 0.82189 0.89719 1.00781 0.86431 1.86056 1.17987 1.51714 1.66050 1.19393 0.92267 0.92095 1.00258 1.20922 0.99056 0.96324 1.03284 1.20644 0.94594 1.01356 1.04588 1.20740 0.94886 0.98523 1.01215 1.20927 0.99701 0.94359 1.02497 1.17406 0.88832 0.93928 0.94070 1.19473 1.08175 1.16388 1.07352 0.92273 1.26584 0.98760 0.97918 0.94764 1.69836 1.25885 1.39756 1.10876 0.85296 0.77510 0.78004 0.79413 1.19681 1.18143 1.18680 1.22331 1.09475 0.92479 0.96431 1.23179 0.91785 0.96571 1.05059 1.23176 0.98576 0.95635 1.04090 0.87957 0.90638 0.90986 0.91906 0.91400 0.85013 0.85052 0.86579 0.87304 0.90383 0.87331 0.87194 0.85472 0.87457 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 1.10 6.19 71.98 0.45 1.55 16 3 O -0.34 -9.92 10.21 -51.43 -0.53 -10.45 16 4 C 0.47 17.52 7.27 71.24 0.52 18.04 16 5 O -0.53 -24.29 16.26 28.39 0.46 -23.83 16 6 C 0.12 4.36 2.54 29.85 0.08 4.43 16 7 H 0.12 3.92 5.24 -2.39 -0.01 3.90 16 8 O -0.30 -14.89 8.59 -70.47 -0.61 -15.49 16 9 C 0.00 0.19 6.31 23.08 0.15 0.34 16 10 C -0.18 -7.38 6.86 22.34 0.15 -7.22 16 11 C -0.19 -7.79 10.04 22.42 0.23 -7.57 16 12 C -0.14 -6.10 9.97 22.00 0.22 -5.89 16 13 C -0.15 -8.28 8.60 22.47 0.19 -8.08 16 14 C 0.06 3.41 5.56 -21.20 -0.12 3.29 16 15 C -0.48 -28.66 8.69 23.40 0.20 -28.46 16 16 H 0.06 3.61 7.70 -2.91 -0.02 3.59 16 17 C 0.03 1.76 5.26 85.25 0.45 2.21 16 18 N -0.84 -46.22 10.83 21.83 0.24 -45.99 16 19 Si 0.98 42.56 29.57 68.60 2.03 44.59 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 23 C -0.19 -5.55 5.37 -10.80 -0.06 -5.61 16 24 C -0.13 -2.66 10.18 30.61 0.31 -2.35 16 25 C -0.18 -4.90 9.68 30.61 0.30 -4.60 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 31 H 0.13 4.46 5.28 -2.91 -0.02 4.44 16 32 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.11 6.09 6.21 -2.91 -0.02 6.08 16 35 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 36 H 0.11 3.15 8.11 -2.39 -0.02 3.13 16 37 H 0.11 2.00 8.05 -2.39 -0.02 1.98 16 38 H 0.13 1.91 8.14 -2.39 -0.02 1.90 16 39 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.09 2.99 5.24 -2.39 -0.01 2.97 16 Total: -1.00 -71.20 336.80 6.44 -64.76 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 1.05 Total: 27.55 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 3.80 Total: -41.14 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.24 Total: -45.99 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -0.67 Total: -49.77 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.20 6.44 -64.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230281532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.652 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds