Wall clock time and date at job start Tue Mar 31 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32596 * 1 3 3 C 1.47774 * 119.99565 * 2 1 4 4 C 1.39580 * 120.08539 * 359.72553 * 3 2 1 5 5 C 1.37868 * 119.90929 * 179.74552 * 4 3 2 6 6 C 1.38853 * 120.08536 * 0.55184 * 5 4 3 7 7 O 1.35868 * 119.90984 * 179.72019 * 6 5 4 8 8 C 1.42893 * 117.00309 * 5.75687 * 7 6 5 9 9 H 1.09000 * 109.47554 * 35.54218 * 8 7 6 10 10 C 1.50706 * 109.46958 * 275.55124 * 8 7 6 11 11 H 1.08004 * 119.99591 * 332.78104 * 10 8 7 12 12 C 1.37875 * 120.00231 * 152.78604 * 10 8 7 13 13 N 1.31515 * 119.99919 * 188.68106 * 12 10 8 14 14 Si 1.86800 * 119.99907 * 8.67838 * 12 10 8 15 15 H 1.48496 * 109.47032 * 89.61661 * 14 12 10 16 16 H 1.48502 * 109.46947 * 209.61497 * 14 12 10 17 17 H 1.48502 * 109.47331 * 329.61325 * 14 12 10 18 18 C 1.52995 * 109.47431 * 155.55128 * 8 7 6 19 19 C 1.50696 * 109.47206 * 294.15554 * 18 8 7 20 20 O 1.20832 * 119.99912 * 359.97438 * 19 18 8 21 21 O 1.34228 * 120.00567 * 180.02562 * 19 18 8 22 22 C 1.45196 * 117.00214 * 180.02562 * 21 19 18 23 23 C 1.53005 * 109.46801 * 179.97438 * 22 21 19 24 24 C 1.38859 * 120.17659 * 359.69821 * 6 5 4 25 25 C 1.37857 * 120.08376 * 0.02562 * 24 6 5 26 26 H 1.07997 * 120.00584 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99333 * 179.72525 * 1 2 3 28 28 H 1.07997 * 120.00584 * 180.02562 * 2 1 3 29 29 H 1.07995 * 120.04671 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.95314 * 180.24931 * 5 4 3 31 31 H 0.97005 * 119.99688 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.47149 * 54.15640 * 18 8 7 33 33 H 1.09002 * 109.47261 * 174.15566 * 18 8 7 34 34 H 1.09001 * 109.47214 * 299.99173 * 22 21 19 35 35 H 1.09001 * 109.47769 * 59.99605 * 22 21 19 36 36 H 1.08998 * 109.47122 * 299.99356 * 23 22 21 37 37 H 1.09001 * 109.47465 * 59.99826 * 23 22 21 38 38 H 1.09006 * 109.46905 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.96216 * 180.02562 * 24 6 5 40 40 H 1.08002 * 120.04404 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0647 1.2798 0.0000 4 6 1.3686 2.4896 -0.0058 5 6 2.0614 3.6815 -0.0005 6 6 3.4500 3.6794 -0.0009 7 8 4.1292 4.8562 -0.0014 8 6 3.3565 6.0514 0.1263 9 1 2.5125 5.8691 0.7915 10 6 2.8466 6.4671 -1.2296 11 1 3.3941 6.1937 -2.1195 12 6 1.6812 7.1965 -1.3339 13 7 1.1446 7.4132 -2.5149 14 14 0.8644 7.8767 0.2021 15 1 1.4025 9.2303 0.4908 16 1 -0.6023 7.9629 -0.0140 17 1 1.1435 6.9778 1.3507 18 6 4.2313 7.1649 0.7055 19 6 4.6236 6.8125 2.1172 20 8 4.2422 5.7772 2.6097 21 8 5.3959 7.6492 2.8280 22 6 5.7348 7.2449 4.1807 23 6 6.6143 8.3166 4.8280 24 6 4.1462 2.4780 -0.0004 25 6 3.4606 1.2820 0.0000 26 1 -0.5401 0.9352 0.0004 27 1 -0.5399 -0.9353 -0.0045 28 1 1.8660 -0.9352 -0.0004 29 1 0.2886 2.4920 -0.0099 30 1 1.5235 4.6180 -0.0009 31 1 0.3245 7.9260 -2.5883 32 1 5.1283 7.2764 0.0962 33 1 3.6740 8.1016 0.7063 34 1 4.8215 7.1235 4.7632 35 1 6.2762 6.2993 4.1526 36 1 7.5276 8.4376 4.2455 37 1 6.0733 9.2624 4.8562 38 1 6.8683 8.0133 5.8438 39 1 5.2262 2.4805 -0.0004 40 1 4.0027 0.3479 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230443127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:16 Heat of formation + Delta-G solvation = -86.003962 kcal Electronic energy + Delta-G solvation = -22996.547346 eV Core-core repulsion = 19549.254790 eV Total energy + Delta-G solvation = -3447.292556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14110 -39.27766 -37.25901 -36.13517 -33.69137 -32.88820 -31.85088 -30.98099 -30.40765 -27.91443 -26.62671 -23.39594 -22.75817 -22.63481 -21.22029 -19.88638 -19.30740 -17.82923 -17.48885 -16.88859 -16.36077 -15.99847 -15.53268 -14.79956 -14.58834 -14.23591 -14.01021 -13.77306 -13.41171 -13.19390 -12.87218 -12.80145 -12.68622 -12.43368 -12.09704 -11.86038 -11.78062 -11.63029 -11.49297 -11.38813 -10.91877 -10.82822 -10.55609 -10.34455 -10.16681 -9.97175 -9.83853 -9.61092 -9.11135 -8.84423 -8.41162 -7.07688 -6.40360 -4.45355 1.52692 1.98649 2.69759 2.99336 3.00513 3.06226 3.13183 3.16885 4.08546 4.17822 4.52348 4.87336 4.94037 4.98321 5.12459 5.16055 5.23430 5.29391 5.45791 5.58714 5.68539 5.75038 5.87208 5.87584 5.91400 5.94131 5.94748 6.05015 6.23273 6.39094 6.53979 6.61638 6.67753 6.73376 6.81032 6.98656 7.12957 7.21125 7.25661 7.44694 8.07272 8.21428 8.36121 8.74682 9.18698 10.71099 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.005870 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.114473 B = 4768.864341 C = 6349.974624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.072 4.072 5 C -0.189 4.189 6 C 0.181 3.819 7 O -0.310 6.310 8 C 0.190 3.810 9 H 0.052 0.948 10 C -0.545 4.545 11 H 0.089 0.911 12 C 0.088 3.912 13 N -0.872 5.872 14 Si 0.846 3.154 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.256 1.256 18 C -0.108 4.108 19 C 0.454 3.546 20 O -0.503 6.503 21 O -0.366 6.366 22 C 0.058 3.942 23 C -0.151 4.151 24 C -0.173 4.173 25 C -0.073 4.073 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.271 0.729 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -4.443 9.797 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.111 4.111 3 C -0.131 4.131 4 C -0.090 4.090 5 C -0.208 4.208 6 C 0.133 3.867 7 O -0.222 6.222 8 C 0.135 3.865 9 H 0.069 0.931 10 C -0.582 4.582 11 H 0.107 0.893 12 C -0.118 4.118 13 N -0.507 5.507 14 Si 0.671 3.329 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.180 1.180 18 C -0.146 4.146 19 C 0.297 3.703 20 O -0.390 6.390 21 O -0.284 6.284 22 C -0.016 4.016 23 C -0.208 4.208 24 C -0.191 4.191 25 C -0.091 4.091 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.654 -4.597 9.847 11.822 hybrid contribution -0.739 0.545 0.794 1.214 sum 3.915 -4.052 10.641 12.041 Atomic orbital electron populations 1.24193 0.95798 1.01679 1.03030 1.21708 0.95003 0.95614 0.98753 1.18809 0.93188 0.92762 1.08316 1.21049 0.99274 0.91359 0.97363 1.21430 0.93825 0.99455 1.06054 1.18996 0.90515 0.86156 0.90987 1.85875 1.37630 1.12893 1.85815 1.20452 0.89474 0.79286 0.97336 0.93059 1.21254 1.08839 1.36493 0.91592 0.89313 1.24890 0.95857 0.95298 0.95770 1.69884 1.19685 1.38098 1.23016 0.87369 0.80161 0.80893 0.84458 1.19037 1.20193 1.18050 1.22192 1.03567 1.02215 0.86601 1.24621 0.74689 0.81616 0.89362 1.90635 1.51892 1.25132 1.71354 1.86562 1.64417 1.50080 1.27304 1.22922 0.99422 0.98603 0.80636 1.21789 0.99935 0.98920 1.00132 1.20268 0.99782 0.90059 1.09033 1.20842 0.93022 0.96783 0.98458 0.88238 0.88524 0.87178 0.86320 0.84384 0.91896 0.86971 0.87201 0.91662 0.91498 0.91543 0.91624 0.90645 0.85970 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.71 14.15 28.83 0.41 -2.30 16 2 C -0.09 -1.30 9.91 -37.59 -0.37 -1.68 16 3 C -0.13 -2.24 5.87 -105.00 -0.62 -2.85 16 4 C -0.07 -1.37 9.39 -39.22 -0.37 -1.74 16 5 C -0.19 -4.13 8.67 -39.49 -0.34 -4.48 16 6 C 0.18 3.99 6.59 -39.12 -0.26 3.73 16 7 O -0.31 -7.22 9.07 -32.86 -0.30 -7.51 16 8 C 0.19 4.43 0.74 -27.88 -0.02 4.41 16 9 H 0.05 1.26 3.67 -51.93 -0.19 1.07 16 10 C -0.54 -14.26 8.22 -34.44 -0.28 -14.54 16 11 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 12 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 13 N -0.87 -24.57 13.96 55.43 0.77 -23.80 16 14 Si 0.85 19.28 26.04 -169.99 -4.43 14.86 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.26 -5.75 6.00 56.52 0.34 -5.42 16 18 C -0.11 -2.17 5.27 -27.89 -0.15 -2.32 16 19 C 0.45 8.89 7.84 36.00 0.28 9.17 16 20 O -0.50 -11.05 15.19 -23.84 -0.36 -11.41 16 21 O -0.37 -6.13 10.22 -39.25 -0.40 -6.53 16 22 C 0.06 0.78 6.19 37.16 0.23 1.01 16 23 C -0.15 -1.46 10.29 37.16 0.38 -1.07 16 24 C -0.17 -3.27 9.97 -39.49 -0.39 -3.66 16 25 C -0.07 -1.22 9.78 -39.22 -0.38 -1.60 16 26 H 0.10 1.32 6.03 -52.49 -0.32 1.00 16 27 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.12 2.00 6.16 -52.49 -0.32 1.68 16 30 H 0.14 3.24 5.65 -52.49 -0.30 2.94 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 32 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 33 H 0.11 2.12 6.44 -51.93 -0.33 1.79 16 34 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 35 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -29.99 338.44 -6.90 -36.89 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.31 Total: 8.12 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.98 Total: -15.71 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.77 Total: -23.80 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.06 Total: -25.46 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.43 Total: 14.86 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.99 -6.90 -36.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230443127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.114 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds