Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.53000 * 109.46986 * 269.99545 * 3 2 1 5 5 H 1.09004 * 112.95870 * 287.14238 * 4 3 2 6 6 C 1.53932 * 113.76151 * 155.49626 * 4 3 2 7 7 C 1.53929 * 86.34240 * 221.96206 * 6 4 3 8 8 N 1.47953 * 86.18142 * 23.71877 * 7 6 4 9 9 C 1.46897 * 111.00438 * 222.41561 * 8 7 6 10 10 C 1.53003 * 109.46916 * 269.36389 * 9 8 7 11 11 F 1.39907 * 109.46629 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00166 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99762 * 0.02562 * 12 2 1 15 15 S 1.81003 * 109.46853 * 179.97438 * 14 12 2 16 16 C 1.76196 * 99.99846 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99637 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00513 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99570 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47083 * 60.00261 * 20 18 16 22 22 H 1.48506 * 109.46585 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47209 * 299.99712 * 20 18 16 24 24 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 25 25 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 26 26 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 27 27 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 28 28 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 29 29 H 1.08999 * 113.73484 * 336.32940 * 6 4 3 30 30 H 1.09008 * 113.73465 * 107.60112 * 6 4 3 31 31 H 1.09004 * 113.75990 * 138.03884 * 7 6 4 32 32 H 1.09001 * 113.75962 * 269.40150 * 7 6 4 33 33 H 1.09005 * 109.46756 * 29.35782 * 9 8 7 34 34 H 1.08992 * 109.47382 * 149.36164 * 9 8 7 35 35 H 1.09005 * 109.46913 * 299.99298 * 10 9 8 36 36 H 1.08992 * 109.47279 * 59.99712 * 10 9 8 37 37 H 1.09000 * 109.47318 * 299.99141 * 14 12 2 38 38 H 1.09000 * 109.47161 * 59.99772 * 14 12 2 39 39 H 0.96995 * 120.00407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 3.2146 1.1119 -1.9419 6 6 2.6542 3.2282 -1.6000 7 6 1.7733 3.1152 -2.8573 8 7 1.2180 1.8918 -2.2376 9 6 1.0690 0.8196 -3.2306 10 6 -0.3246 0.8954 -3.8577 11 9 -0.4663 -0.1254 -4.8038 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 16 2.5615 -3.8481 0.0005 16 6 1.4413 -5.2082 0.0013 17 1 0.3761 -5.0304 0.0020 18 6 1.9281 -6.5081 0.0020 19 7 3.2264 -6.7248 0.0027 20 14 0.7405 -7.9500 0.0036 21 1 -0.1150 -7.8880 -1.2086 22 1 1.5067 -9.2222 0.0048 23 1 -0.1140 -7.8863 1.2164 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 2.2039 3.8160 -0.8001 30 1 3.6847 3.5144 -1.8106 31 1 1.0488 3.9231 -2.9600 32 1 2.3356 2.9277 -3.7721 33 1 1.8240 0.9370 -4.0080 34 1 1.1962 -0.1471 -2.7435 35 1 -1.0797 0.7781 -3.0803 36 1 -0.4518 1.8621 -4.3448 37 1 0.7584 -2.5299 0.8903 38 1 0.7589 -2.5302 -0.8897 39 1 3.5666 -7.6331 0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230816002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -50.310761 kcal Electronic energy + Delta-G solvation = -21427.825693 eV Core-core repulsion = 18026.357308 eV Total energy + Delta-G solvation = -3401.468385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.70820 -40.53481 -38.96388 -35.14036 -32.58805 -32.41125 -30.33802 -28.05795 -26.93225 -26.25163 -25.45831 -23.48531 -22.31917 -20.02302 -19.08445 -17.63444 -16.87153 -16.65004 -16.49308 -16.01853 -15.67521 -15.29830 -14.87286 -14.78696 -14.69236 -14.16820 -13.80518 -13.37336 -13.06602 -12.93559 -12.58478 -12.44246 -12.20592 -11.95606 -11.84771 -11.67151 -11.55393 -11.11895 -11.02510 -11.01662 -10.84315 -10.78041 -10.72668 -9.79600 -9.37328 -9.21261 -9.04096 -8.39742 -8.21562 -6.48516 -6.19806 -3.90396 2.94887 3.06871 3.25112 3.26726 3.30318 3.47791 3.68081 4.22258 4.22726 4.45968 4.51242 4.61652 4.84126 4.88818 4.98293 5.09373 5.12510 5.15280 5.23048 5.28911 5.31053 5.37681 5.42967 5.51936 5.56999 5.65704 5.72723 5.78141 5.89021 5.90858 5.94741 6.10146 6.16317 6.65742 6.75712 7.58770 7.61461 8.36842 8.58455 9.25455 10.87611 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.004100 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.719732 B = 6827.800025 C = 7647.773629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.617 5.617 3 C 0.139 3.861 4 C 0.020 3.980 5 H 0.086 0.914 6 C -0.138 4.138 7 C -0.002 4.002 8 N -0.470 5.470 9 C -0.012 4.012 10 C 0.072 3.928 11 F -0.217 7.217 12 C 0.530 3.470 13 O -0.519 6.519 14 C -0.149 4.149 15 S -0.062 6.062 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.696 21.535 -4.061 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.352 5.352 3 C 0.015 3.985 4 C -0.091 4.091 5 H 0.104 0.896 6 C -0.176 4.176 7 C -0.131 4.131 8 N -0.193 5.193 9 C -0.141 4.141 10 C 0.017 3.983 11 F -0.198 7.198 12 C 0.318 3.682 13 O -0.394 6.394 14 C -0.300 4.300 15 S 0.164 5.836 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.408 21.362 -3.760 22.354 hybrid contribution -1.540 -1.166 -0.619 2.029 sum -6.948 20.195 -4.379 21.801 Atomic orbital electron populations 1.21808 0.79502 1.03498 1.01399 1.47748 1.06954 1.05274 1.75263 1.21285 0.98097 0.85141 0.93971 1.23941 0.91846 0.96525 0.96751 0.89581 1.23363 1.00424 0.95517 0.98305 1.23977 0.97558 0.94835 0.96707 1.68267 1.32709 1.02722 1.15607 1.23219 0.96886 0.98093 0.95914 1.21766 0.98150 0.88449 0.89964 1.92787 1.96918 1.62818 1.67256 1.20383 0.87940 0.84710 0.75161 1.90685 1.13746 1.86874 1.48054 1.23549 1.04504 0.97320 1.04622 1.85359 1.08128 0.93377 1.96705 1.22818 0.94274 0.92229 1.59007 0.91021 1.24979 0.95650 0.98337 0.94513 1.70004 1.11757 1.21737 1.46854 0.86240 0.80224 0.80315 0.78827 1.19909 1.20807 1.19928 0.93166 0.90180 0.91276 0.90242 0.89364 0.88862 0.90683 0.89244 0.91183 0.92810 0.89410 0.90122 0.91189 0.89334 0.89447 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.04 59.85 0.60 1.49 16 2 N -0.62 -8.56 2.82 -181.57 -0.51 -9.07 16 3 C 0.14 1.59 5.54 -4.04 -0.02 1.57 16 4 C 0.02 0.20 3.55 -66.66 -0.24 -0.03 16 5 H 0.09 1.10 7.93 -51.93 -0.41 0.69 16 6 C -0.14 -1.01 7.84 -25.80 -0.20 -1.21 16 7 C 0.00 -0.01 7.96 -2.77 -0.02 -0.04 16 8 N -0.47 -4.39 4.88 -230.73 -1.13 -5.52 16 9 C -0.01 -0.13 5.25 -3.82 -0.02 -0.15 16 10 C 0.07 0.70 7.86 37.16 0.29 1.00 16 11 F -0.22 -2.84 17.36 2.25 0.04 -2.80 16 12 C 0.53 10.03 7.69 -10.98 -0.08 9.94 16 13 O -0.52 -11.70 15.44 5.56 0.09 -11.61 16 14 C -0.15 -3.09 4.71 36.01 0.17 -2.92 16 15 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 16 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 19 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 20 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.75 7.25 -51.93 -0.38 0.37 16 26 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 27 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 28 H 0.09 1.14 7.42 -51.93 -0.39 0.76 16 29 H 0.09 0.59 7.94 -51.93 -0.41 0.18 16 30 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 33 H 0.05 0.59 7.38 -51.93 -0.38 0.20 16 34 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.72 8.11 -51.92 -0.42 1.30 16 38 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -33.99 340.69 -8.19 -42.18 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.98 Total: -1.91 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 0.67 Total: -3.40 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.90 Total: -40.25 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.99 -8.19 -42.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.135 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds