Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.53000 * 109.46986 * 269.99545 * 3 2 1 5 5 H 1.09004 * 112.95870 * 287.14238 * 4 3 2 6 6 C 1.53932 * 113.76151 * 155.49626 * 4 3 2 7 7 C 1.53929 * 86.34240 * 221.96206 * 6 4 3 8 8 N 1.47953 * 86.18142 * 23.71877 * 7 6 4 9 9 C 1.46897 * 111.00438 * 222.41561 * 8 7 6 10 10 C 1.53003 * 109.46916 * 269.36389 * 9 8 7 11 11 F 1.39907 * 109.46629 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00166 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99762 * 0.02562 * 12 2 1 15 15 S 1.81003 * 109.46853 * 179.97438 * 14 12 2 16 16 C 1.76196 * 99.99846 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99637 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00513 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99570 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47083 * 60.00261 * 20 18 16 22 22 H 1.48506 * 109.46585 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47209 * 299.99712 * 20 18 16 24 24 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 25 25 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 26 26 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 27 27 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 28 28 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 29 29 H 1.08999 * 113.73484 * 336.32940 * 6 4 3 30 30 H 1.09008 * 113.73465 * 107.60112 * 6 4 3 31 31 H 1.09004 * 113.75990 * 138.03884 * 7 6 4 32 32 H 1.09001 * 113.75962 * 269.40150 * 7 6 4 33 33 H 1.09005 * 109.46756 * 29.35782 * 9 8 7 34 34 H 1.08992 * 109.47382 * 149.36164 * 9 8 7 35 35 H 1.09005 * 109.46913 * 299.99298 * 10 9 8 36 36 H 1.08992 * 109.47279 * 59.99712 * 10 9 8 37 37 H 1.09000 * 109.47318 * 299.99141 * 14 12 2 38 38 H 1.09000 * 109.47161 * 59.99772 * 14 12 2 39 39 H 0.96995 * 120.00407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 3.2146 1.1119 -1.9419 6 6 2.6542 3.2282 -1.6000 7 6 1.7733 3.1152 -2.8573 8 7 1.2180 1.8918 -2.2376 9 6 1.0690 0.8196 -3.2306 10 6 -0.3246 0.8954 -3.8577 11 9 -0.4663 -0.1254 -4.8038 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 16 2.5615 -3.8481 0.0005 16 6 1.4413 -5.2082 0.0013 17 1 0.3761 -5.0304 0.0020 18 6 1.9281 -6.5081 0.0020 19 7 3.2264 -6.7248 0.0027 20 14 0.7405 -7.9500 0.0036 21 1 -0.1150 -7.8880 -1.2086 22 1 1.5067 -9.2222 0.0048 23 1 -0.1140 -7.8863 1.2164 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 2.2039 3.8160 -0.8001 30 1 3.6847 3.5144 -1.8106 31 1 1.0488 3.9231 -2.9600 32 1 2.3356 2.9277 -3.7721 33 1 1.8240 0.9370 -4.0080 34 1 1.1962 -0.1471 -2.7435 35 1 -1.0797 0.7781 -3.0803 36 1 -0.4518 1.8621 -4.3448 37 1 0.7584 -2.5299 0.8903 38 1 0.7589 -2.5302 -0.8897 39 1 3.5666 -7.6331 0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230816002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -73.729667 kcal Electronic energy + Delta-G solvation = -21428.841213 eV Core-core repulsion = 18026.357308 eV Total energy + Delta-G solvation = -3402.483905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.63563 -41.45200 -40.22854 -36.43166 -34.60156 -33.42681 -31.64434 -29.26064 -27.70311 -27.64322 -27.23899 -24.40956 -23.13510 -20.93025 -20.41142 -19.50385 -18.06053 -17.59686 -17.49920 -17.14624 -16.89461 -16.83274 -16.32804 -15.86735 -15.79630 -15.64932 -14.84640 -14.63351 -14.38740 -14.29140 -13.96495 -13.53650 -13.33141 -13.18723 -13.07455 -12.88309 -12.69541 -12.57294 -12.48981 -12.32394 -11.94501 -11.73224 -11.63954 -11.55208 -11.14382 -10.87319 -10.30110 -10.07657 -9.50911 -8.69393 -8.35995 -6.14734 1.24670 1.42700 1.44575 1.54677 1.57288 2.12295 2.26439 2.74433 2.98008 3.25324 3.48750 3.68295 3.71906 3.81153 3.86931 4.08973 4.15873 4.19600 4.28428 4.36214 4.38139 4.43195 4.46475 4.49414 4.60569 4.71611 4.79144 4.86704 4.95318 4.99277 5.03704 5.26116 5.28199 5.39444 5.59236 5.93829 6.17813 6.31348 7.04953 7.15683 8.73132 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.004100 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.719732 B = 6827.800025 C = 7647.773629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.601 5.601 3 C 0.136 3.864 4 C 0.011 3.989 5 H 0.052 0.948 6 C -0.122 4.122 7 C 0.001 3.999 8 N -0.462 5.462 9 C -0.007 4.007 10 C 0.072 3.928 11 F -0.238 7.238 12 C 0.528 3.472 13 O -0.566 6.566 14 C -0.123 4.123 15 S -0.151 6.151 16 C -0.548 4.548 17 H 0.081 0.919 18 C 0.015 3.985 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.261 1.261 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 23.515 -3.996 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.334 5.334 3 C 0.014 3.986 4 C -0.100 4.100 5 H 0.070 0.930 6 C -0.160 4.160 7 C -0.127 4.127 8 N -0.185 5.185 9 C -0.137 4.137 10 C 0.017 3.983 11 F -0.219 7.219 12 C 0.315 3.685 13 O -0.445 6.445 14 C -0.274 4.274 15 S 0.076 5.924 16 C -0.696 4.696 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.185 1.185 24 H 0.087 0.913 25 H 0.122 0.878 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.209 23.397 -3.697 25.069 hybrid contribution -0.705 -1.614 -0.645 1.876 sum -8.914 21.783 -4.342 23.934 Atomic orbital electron populations 1.22056 0.77185 1.04444 1.02890 1.47737 1.08342 1.04531 1.72773 1.21520 0.97659 0.84381 0.95063 1.23835 0.91771 0.98575 0.95770 0.92983 1.23355 1.01184 0.92692 0.98819 1.24070 0.97967 0.94063 0.96577 1.68289 1.31984 1.02892 1.15348 1.23113 0.97695 0.97110 0.95784 1.21940 0.97458 0.88866 0.90050 1.92745 1.96954 1.64044 1.68177 1.20112 0.87273 0.85569 0.75504 1.90667 1.15556 1.87515 1.50800 1.23359 1.02693 0.95469 1.05860 1.85521 1.12626 0.97237 1.97016 1.23154 0.94557 0.92728 1.59130 0.90111 1.26119 0.97602 1.01619 0.93612 1.70172 1.14131 1.22557 1.47890 0.85021 0.77641 0.75913 0.79533 1.18743 1.20229 1.18518 0.91283 0.87768 0.91860 0.86663 0.91305 0.86834 0.90059 0.86851 0.91290 0.93581 0.92775 0.88776 0.88582 0.87732 0.88249 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.47 10.04 127.77 1.28 2.75 16 2 N -0.60 -16.07 2.82 -846.75 -2.39 -18.46 16 3 C 0.14 2.95 5.54 86.38 0.48 3.43 16 4 C 0.01 0.22 3.55 45.02 0.16 0.38 16 5 H 0.05 1.40 7.93 -2.38 -0.02 1.38 16 6 C -0.12 -1.44 7.84 31.24 0.24 -1.19 16 7 C 0.00 0.02 7.96 86.40 0.69 0.70 16 8 N -0.46 -7.60 4.88 -883.91 -4.31 -11.91 16 9 C -0.01 -0.16 5.25 86.30 0.45 0.30 16 10 C 0.07 1.27 7.86 71.98 0.57 1.83 16 11 F -0.24 -6.06 17.36 44.97 0.78 -5.28 16 12 C 0.53 20.37 7.69 87.66 0.67 21.05 16 13 O -0.57 -26.83 15.44 -3.03 -0.05 -26.88 16 14 C -0.12 -5.13 4.71 71.24 0.34 -4.80 16 15 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 16 C -0.55 -32.03 9.50 67.96 0.65 -31.39 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 18 C 0.02 0.89 5.49 84.86 0.47 1.35 16 19 N -0.91 -56.83 13.22 21.65 0.29 -56.55 16 20 Si 1.00 44.28 29.55 68.60 2.03 46.31 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.55 7.25 -2.38 -0.02 1.53 16 26 H 0.06 1.32 6.44 -2.39 -0.02 1.31 16 27 H 0.12 1.70 7.84 -2.39 -0.02 1.68 16 28 H 0.07 1.79 7.42 -2.39 -0.02 1.77 16 29 H 0.11 0.94 7.94 -2.39 -0.02 0.92 16 30 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.85 7.48 -2.39 -0.02 0.83 16 33 H 0.05 1.01 7.38 -2.38 -0.02 1.00 16 34 H 0.05 1.50 8.08 -2.39 -0.02 1.48 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 4.00 8.11 -2.39 -0.02 3.98 16 38 H 0.10 3.89 7.40 -2.40 -0.02 3.87 16 39 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -77.75 340.69 2.21 -75.55 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.03 Total: 12.62 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.99 Total: -5.59 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -6.42 Total: -86.92 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.78 Total: -5.28 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -77.75 2.21 -75.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.815 kcal (2) G-P(sol) polarization free energy of solvation -77.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds