Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99756 * 2 1 4 4 C 1.52998 * 109.47470 * 270.00188 * 3 2 1 5 5 H 1.09000 * 112.95468 * 74.66835 * 4 3 2 6 6 C 1.53935 * 113.76048 * 206.31581 * 4 3 2 7 7 C 1.53929 * 86.34185 * 138.03711 * 6 4 3 8 8 N 1.47963 * 113.76031 * 303.02187 * 4 3 2 9 9 C 1.46901 * 110.99766 * 108.09744 * 8 4 3 10 10 C 1.52998 * 109.46867 * 170.00294 * 9 8 4 11 11 F 1.39895 * 109.47323 * 180.02562 * 10 9 8 12 12 C 1.34771 * 120.00128 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99896 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00048 * 359.97438 * 12 2 1 15 15 S 1.81000 * 109.46826 * 180.02562 * 14 12 2 16 16 C 1.76205 * 99.99509 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00431 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99884 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99752 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99976 * 180.27840 * 18 16 15 21 21 H 1.48497 * 109.47173 * 179.72423 * 20 18 16 22 22 H 1.48506 * 109.46866 * 299.71959 * 20 18 16 23 23 H 1.48501 * 109.47438 * 59.72080 * 20 18 16 24 24 H 1.08996 * 109.46996 * 269.99683 * 1 2 3 25 25 H 1.09003 * 109.47400 * 29.99677 * 1 2 3 26 26 H 1.09003 * 109.46993 * 149.99446 * 1 2 3 27 27 H 1.09000 * 109.47071 * 30.00398 * 3 2 1 28 28 H 1.09007 * 109.46858 * 150.00118 * 3 2 1 29 29 H 1.09003 * 113.73432 * 252.39707 * 6 4 3 30 30 H 1.09004 * 113.73302 * 23.67998 * 6 4 3 31 31 H 1.08998 * 113.75913 * 90.59508 * 7 6 4 32 32 H 1.09000 * 113.76321 * 221.85075 * 7 6 4 33 33 H 1.08997 * 109.47358 * 289.99880 * 9 8 4 34 34 H 1.08996 * 109.47302 * 50.00107 * 9 8 4 35 35 H 1.09007 * 109.47311 * 299.99918 * 10 9 8 36 36 H 1.08996 * 109.47312 * 59.99819 * 10 9 8 37 37 H 1.09000 * 109.46926 * 60.00592 * 14 12 2 38 38 H 1.09001 * 109.47144 * 300.00330 * 14 12 2 39 39 H 0.97005 * 119.99723 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5599 2.1006 -1.9317 6 6 3.6920 2.6085 -1.6062 7 6 3.9987 1.7862 -2.8707 8 7 3.1873 0.7125 -2.2506 9 6 2.3027 0.0810 -3.2389 10 6 3.1384 -0.7524 -4.2124 11 9 2.2961 -1.3533 -5.1540 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 16 2.5617 -3.8479 -0.0005 16 6 1.4416 -5.2081 -0.0013 17 1 0.3763 -5.0305 -0.0020 18 6 1.9284 -6.5080 -0.0010 19 7 3.2268 -6.7245 -0.0006 20 14 0.7410 -7.9500 -0.0097 21 1 1.5071 -9.2221 -0.0146 22 1 -0.1159 -7.8929 1.2020 23 1 -0.1123 -7.8814 -1.2231 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.4537 3.6527 -1.8090 30 1 4.4302 2.4861 -0.8135 31 1 3.5589 2.1973 -3.7793 32 1 5.0528 1.5334 -2.9853 33 1 1.5891 -0.5650 -2.7275 34 1 1.7646 0.8522 -3.7900 35 1 3.8521 -0.1064 -4.7239 36 1 3.6766 -1.5236 -3.6613 37 1 0.7585 -2.5299 -0.8903 38 1 0.7590 -2.5302 0.8897 39 1 3.5670 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230816005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = -47.048539 kcal Electronic energy + Delta-G solvation = -21747.284373 eV Core-core repulsion = 18345.957449 eV Total energy + Delta-G solvation = -3401.326925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.47599 -40.40001 -38.74620 -35.08988 -32.38009 -32.36827 -30.20906 -27.99916 -26.76333 -26.23080 -25.42273 -23.44355 -22.08368 -19.79935 -19.09029 -17.59319 -16.76654 -16.37381 -16.36923 -15.86853 -15.64212 -15.13986 -14.76171 -14.71743 -14.46505 -13.93034 -13.72606 -13.27649 -13.02030 -12.80578 -12.64273 -12.39510 -12.30937 -11.98060 -11.63804 -11.55231 -11.29030 -11.00687 -10.99320 -10.95034 -10.72995 -10.66889 -10.55779 -9.75993 -9.14415 -9.01236 -8.91493 -8.29551 -8.16027 -6.43410 -6.16883 -3.86433 3.01012 3.26062 3.27235 3.29380 3.32122 3.59069 3.79138 4.25440 4.32322 4.57575 4.64615 4.83119 4.90603 5.02966 5.11706 5.14399 5.17204 5.18208 5.21476 5.33719 5.41412 5.48695 5.51066 5.62003 5.65305 5.70400 5.72557 5.88681 5.98567 6.00181 6.06737 6.19741 6.27142 6.78207 6.96743 7.63474 7.69578 8.39531 8.78052 9.28399 10.90442 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.004652 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.916384 B = 6017.085160 C = 6698.409701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.625 5.625 3 C 0.138 3.862 4 C 0.015 3.985 5 H 0.075 0.925 6 C -0.134 4.134 7 C -0.006 4.006 8 N -0.446 5.446 9 C -0.003 4.003 10 C 0.066 3.934 11 F -0.218 7.218 12 C 0.533 3.467 13 O -0.492 6.492 14 C -0.150 4.150 15 S -0.058 6.058 16 C -0.535 4.535 17 H 0.070 0.930 18 C 0.075 3.925 19 N -0.868 5.868 20 Si 0.917 3.083 21 H -0.283 1.283 22 H -0.274 1.274 23 H -0.274 1.274 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 20.210 -4.147 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C 0.014 3.986 4 C -0.095 4.095 5 H 0.093 0.907 6 C -0.172 4.172 7 C -0.135 4.135 8 N -0.168 5.168 9 C -0.132 4.132 10 C 0.010 3.990 11 F -0.199 7.199 12 C 0.320 3.680 13 O -0.364 6.364 14 C -0.301 4.301 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.088 0.912 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.743 3.257 21 H -0.208 1.208 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.773 19.463 -3.857 19.920 hybrid contribution -2.961 -0.370 -0.627 3.049 sum -4.734 19.092 -4.485 20.175 Atomic orbital electron populations 1.21726 0.80290 1.02689 1.01553 1.47766 1.06234 1.05706 1.76509 1.21279 0.98253 0.84981 0.94039 1.23927 0.96260 0.92496 0.96858 0.90686 1.23325 0.97476 0.97759 0.98686 1.23950 1.00811 0.92489 0.96245 1.68670 1.14810 1.18972 1.14375 1.23116 0.96565 0.98896 0.94637 1.21843 0.91250 0.97603 0.88277 1.92752 1.74242 1.85694 1.67231 1.20150 0.88042 0.84170 0.75630 1.90703 1.13301 1.86369 1.46008 1.23563 1.04514 0.97773 1.04222 1.85357 1.07960 0.93154 1.96649 1.22834 0.94298 0.92373 1.58860 0.91156 1.24967 0.95611 0.98297 0.94587 1.70013 1.11715 1.21670 1.46939 0.86259 0.80265 0.80416 0.78774 1.20821 1.19983 1.19957 0.92870 0.91895 0.90953 0.90680 0.89174 0.91078 0.88617 0.91653 0.89065 0.89647 0.93974 0.91370 0.88975 0.89843 0.89726 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.24 59.85 0.61 1.46 16 2 N -0.63 -8.65 2.83 -181.56 -0.51 -9.17 16 3 C 0.14 1.58 5.59 -4.04 -0.02 1.56 16 4 C 0.02 0.16 3.58 -66.65 -0.24 -0.08 16 5 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 6 C -0.13 -1.16 7.84 -25.79 -0.20 -1.36 16 7 C -0.01 -0.06 7.12 -2.65 -0.02 -0.08 16 8 N -0.45 -5.79 4.97 -229.72 -1.14 -6.93 16 9 C 0.00 -0.04 5.27 -3.82 -0.02 -0.06 16 10 C 0.07 0.91 7.62 37.16 0.28 1.20 16 11 F -0.22 -3.47 17.36 2.25 0.04 -3.43 16 12 C 0.53 10.07 6.99 -10.99 -0.08 9.99 16 13 O -0.49 -11.02 14.88 5.55 0.08 -10.94 16 14 C -0.15 -3.12 4.71 36.01 0.17 -2.95 16 15 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 16 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 19 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 20 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 26 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 27 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 28 H 0.09 1.22 7.16 -51.93 -0.37 0.85 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.88 7.92 -51.93 -0.41 0.47 16 31 H 0.07 0.55 7.78 -51.93 -0.40 0.15 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.30 7.90 -51.93 -0.41 0.89 16 34 H 0.04 0.48 7.69 -51.93 -0.40 0.08 16 35 H 0.07 0.78 7.55 -51.93 -0.39 0.39 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.64 7.40 -51.92 -0.38 1.26 16 38 H 0.08 1.66 8.11 -51.91 -0.42 1.24 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -34.59 339.24 -8.25 -42.84 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.01 Total: -1.20 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 0.68 Total: -3.43 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -0.92 Total: -41.83 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.59 -8.25 -42.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.208 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds