Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99756 * 2 1 4 4 C 1.52998 * 109.47470 * 270.00188 * 3 2 1 5 5 H 1.09000 * 112.95468 * 74.66835 * 4 3 2 6 6 C 1.53935 * 113.76048 * 206.31581 * 4 3 2 7 7 C 1.53929 * 86.34185 * 138.03711 * 6 4 3 8 8 N 1.47963 * 113.76031 * 303.02187 * 4 3 2 9 9 C 1.46901 * 110.99766 * 108.09744 * 8 4 3 10 10 C 1.52998 * 109.46867 * 170.00294 * 9 8 4 11 11 F 1.39895 * 109.47323 * 180.02562 * 10 9 8 12 12 C 1.34771 * 120.00128 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99896 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00048 * 359.97438 * 12 2 1 15 15 S 1.81000 * 109.46826 * 180.02562 * 14 12 2 16 16 C 1.76205 * 99.99509 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00431 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99884 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99752 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99976 * 180.27840 * 18 16 15 21 21 H 1.48497 * 109.47173 * 179.72423 * 20 18 16 22 22 H 1.48506 * 109.46866 * 299.71959 * 20 18 16 23 23 H 1.48501 * 109.47438 * 59.72080 * 20 18 16 24 24 H 1.08996 * 109.46996 * 269.99683 * 1 2 3 25 25 H 1.09003 * 109.47400 * 29.99677 * 1 2 3 26 26 H 1.09003 * 109.46993 * 149.99446 * 1 2 3 27 27 H 1.09000 * 109.47071 * 30.00398 * 3 2 1 28 28 H 1.09007 * 109.46858 * 150.00118 * 3 2 1 29 29 H 1.09003 * 113.73432 * 252.39707 * 6 4 3 30 30 H 1.09004 * 113.73302 * 23.67998 * 6 4 3 31 31 H 1.08998 * 113.75913 * 90.59508 * 7 6 4 32 32 H 1.09000 * 113.76321 * 221.85075 * 7 6 4 33 33 H 1.08997 * 109.47358 * 289.99880 * 9 8 4 34 34 H 1.08996 * 109.47302 * 50.00107 * 9 8 4 35 35 H 1.09007 * 109.47311 * 299.99918 * 10 9 8 36 36 H 1.08996 * 109.47312 * 59.99819 * 10 9 8 37 37 H 1.09000 * 109.46926 * 60.00592 * 14 12 2 38 38 H 1.09001 * 109.47144 * 300.00330 * 14 12 2 39 39 H 0.97005 * 119.99723 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5599 2.1006 -1.9317 6 6 3.6920 2.6085 -1.6062 7 6 3.9987 1.7862 -2.8707 8 7 3.1873 0.7125 -2.2506 9 6 2.3027 0.0810 -3.2389 10 6 3.1384 -0.7524 -4.2124 11 9 2.2961 -1.3533 -5.1540 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 16 2.5617 -3.8479 -0.0005 16 6 1.4416 -5.2081 -0.0013 17 1 0.3763 -5.0305 -0.0020 18 6 1.9284 -6.5080 -0.0010 19 7 3.2268 -6.7245 -0.0006 20 14 0.7410 -7.9500 -0.0097 21 1 1.5071 -9.2221 -0.0146 22 1 -0.1159 -7.8929 1.2020 23 1 -0.1123 -7.8814 -1.2231 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.4537 3.6527 -1.8090 30 1 4.4302 2.4861 -0.8135 31 1 3.5589 2.1973 -3.7793 32 1 5.0528 1.5334 -2.9853 33 1 1.5891 -0.5650 -2.7275 34 1 1.7646 0.8522 -3.7900 35 1 3.8521 -0.1064 -4.7239 36 1 3.6766 -1.5236 -3.6613 37 1 0.7585 -2.5299 -0.8903 38 1 0.7590 -2.5302 0.8897 39 1 3.5670 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230816005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = -71.291092 kcal Electronic energy + Delta-G solvation = -21748.335609 eV Core-core repulsion = 18345.957449 eV Total energy + Delta-G solvation = -3402.378161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.70013 -41.36033 -40.00840 -36.34657 -34.58207 -33.35501 -31.52065 -29.19276 -27.71390 -27.67115 -27.18642 -24.39398 -23.10284 -20.76624 -20.37172 -19.47469 -17.95069 -17.59232 -17.46442 -17.06746 -16.87780 -16.78700 -16.36395 -15.83263 -15.76385 -15.56292 -14.76467 -14.53518 -14.36836 -14.10977 -13.97141 -13.44923 -13.34335 -13.19531 -13.12573 -12.88039 -12.71654 -12.54828 -12.39731 -12.22927 -11.93036 -11.72789 -11.60661 -11.52105 -11.12924 -10.65497 -10.24765 -9.83448 -9.35008 -8.64527 -8.34243 -6.11479 1.27541 1.42548 1.46355 1.56766 1.80489 2.20116 2.29286 2.84234 2.99477 3.30885 3.48357 3.70914 3.73876 3.83097 3.87601 4.03999 4.20170 4.25274 4.28104 4.34605 4.36427 4.45962 4.48915 4.52054 4.62028 4.72694 4.76594 4.93214 4.95299 4.99306 5.01027 5.29217 5.40243 5.40587 5.75662 6.11963 6.19170 6.44173 7.06727 7.38033 8.74715 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.004652 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.916384 B = 6017.085160 C = 6698.409701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.612 5.612 3 C 0.134 3.866 4 C 0.017 3.983 5 H 0.099 0.901 6 C -0.120 4.120 7 C -0.006 4.006 8 N -0.486 5.486 9 C 0.007 3.993 10 C 0.065 3.935 11 F -0.230 7.230 12 C 0.534 3.466 13 O -0.538 6.538 14 C -0.124 4.124 15 S -0.144 6.144 16 C -0.549 4.549 17 H 0.078 0.922 18 C 0.016 3.984 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.277 1.277 22 H -0.261 1.261 23 H -0.264 1.264 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 22.335 -4.418 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.346 5.346 3 C 0.011 3.989 4 C -0.093 4.093 5 H 0.117 0.883 6 C -0.158 4.158 7 C -0.134 4.134 8 N -0.210 5.210 9 C -0.122 4.122 10 C 0.010 3.990 11 F -0.212 7.212 12 C 0.320 3.680 13 O -0.414 6.414 14 C -0.276 4.276 15 S 0.083 5.917 16 C -0.697 4.697 17 H 0.096 0.904 18 C -0.189 4.189 19 N -0.547 5.547 20 Si 0.817 3.183 21 H -0.202 1.202 22 H -0.185 1.185 23 H -0.188 1.188 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.266 21.642 -4.126 22.441 hybrid contribution -2.213 -0.892 -0.536 2.446 sum -6.479 20.750 -4.662 22.232 Atomic orbital electron populations 1.22009 0.77747 1.04111 1.03024 1.47706 1.07798 1.04902 1.74234 1.21550 0.97582 0.84378 0.95394 1.24010 0.97661 0.92012 0.95578 0.88346 1.23229 0.96092 0.99001 0.97472 1.24023 1.00101 0.91677 0.97611 1.68694 1.15963 1.20993 1.15337 1.22963 0.96036 0.98859 0.94375 1.21897 0.91659 0.97105 0.88354 1.92721 1.74658 1.86099 1.67687 1.19810 0.87372 0.84954 0.75863 1.90687 1.15023 1.87012 1.48647 1.23382 1.02736 0.96213 1.05228 1.85504 1.12343 0.96908 1.96942 1.23168 0.94570 0.92971 1.58956 0.90367 1.26094 0.97556 1.01568 0.93707 1.70180 1.14080 1.22478 1.47989 0.85047 0.77703 0.76049 0.79469 1.20210 1.18550 1.18839 0.91289 0.88250 0.91863 0.86568 0.91850 0.87940 0.89792 0.89592 0.89935 0.92325 0.91593 0.88579 0.92359 0.88844 0.88393 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 10.24 127.77 1.31 2.61 16 2 N -0.61 -15.89 2.83 -846.73 -2.40 -18.28 16 3 C 0.13 2.75 5.59 86.38 0.48 3.23 16 4 C 0.02 0.31 3.58 45.02 0.16 0.47 16 5 H 0.10 1.34 7.79 -2.39 -0.02 1.32 16 6 C -0.12 -1.73 7.84 31.23 0.25 -1.49 16 7 C -0.01 -0.10 7.12 86.36 0.62 0.51 16 8 N -0.49 -12.14 4.97 -880.69 -4.38 -16.52 16 9 C 0.01 0.18 5.27 86.30 0.46 0.63 16 10 C 0.07 1.84 7.62 71.98 0.55 2.39 16 11 F -0.23 -7.40 17.36 44.97 0.78 -6.62 16 12 C 0.53 20.36 6.99 87.66 0.61 20.97 16 13 O -0.54 -25.09 14.88 -3.06 -0.05 -25.14 16 14 C -0.12 -5.23 4.71 71.24 0.34 -4.90 16 15 S -0.14 -8.26 20.57 -56.49 -1.16 -9.42 16 16 C -0.55 -32.31 9.50 67.96 0.65 -31.66 16 17 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 18 C 0.02 0.91 5.49 84.86 0.47 1.37 16 19 N -0.91 -57.13 13.22 21.65 0.29 -56.84 16 20 Si 1.00 44.63 29.55 68.60 2.03 46.65 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.09 8.07 -2.39 -0.02 1.07 16 26 H 0.06 1.26 6.44 -2.39 -0.02 1.25 16 27 H 0.12 1.45 8.07 -2.39 -0.02 1.43 16 28 H 0.06 1.68 7.16 -2.38 -0.02 1.66 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.43 7.92 -2.39 -0.02 1.41 16 31 H 0.09 1.17 7.78 -2.39 -0.02 1.15 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.78 7.90 -2.39 -0.02 1.76 16 34 H 0.07 1.33 7.69 -2.39 -0.02 1.31 16 35 H 0.10 2.13 7.55 -2.38 -0.02 2.12 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 3.71 7.40 -2.39 -0.02 3.69 16 38 H 0.10 3.81 8.11 -2.39 -0.02 3.79 16 39 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -79.57 339.24 2.01 -77.56 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.03 Total: 14.48 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.88 Total: -5.86 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -6.49 Total: -91.65 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.78 Total: -6.62 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -79.57 2.01 -77.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.269 kcal (2) G-P(sol) polarization free energy of solvation -79.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds