Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87367 * 2 1 4 4 O 1.43740 * 109.88085 * 121.16286 * 2 1 3 5 5 C 1.44382 * 106.97722 * 145.93349 * 4 2 1 6 6 C 1.55221 * 103.56711 * 320.01767 * 5 4 2 7 7 C 1.54099 * 109.87779 * 238.99437 * 2 1 3 8 8 H 1.09002 * 110.48856 * 119.74153 * 7 2 1 9 9 C 1.52993 * 110.48870 * 357.22538 * 7 2 1 10 10 O 1.42902 * 109.47236 * 176.84382 * 9 7 2 11 11 C 1.35665 * 117.00081 * 179.97438 * 10 9 7 12 12 C 1.39158 * 119.90952 * 179.97438 * 11 10 9 13 13 C 1.37586 * 120.09948 * 180.02562 * 12 11 10 14 14 C 1.39952 * 119.90306 * 0.02562 * 13 12 11 15 15 C 1.47576 * 120.09333 * 179.97438 * 14 13 12 16 16 O 1.21817 * 119.99832 * 359.97438 * 15 14 13 17 17 C 1.41757 * 120.00060 * 180.02562 * 15 14 13 18 18 H 1.08003 * 119.99669 * 6.83898 * 17 15 14 19 19 C 1.40338 * 120.00205 * 186.85019 * 17 15 14 20 20 N 1.30534 * 120.00036 * 184.84733 * 19 17 15 21 21 Si 1.86796 * 119.99834 * 4.84588 * 19 17 15 22 22 H 1.48503 * 109.47374 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47555 * 60.00153 * 21 19 17 24 24 H 1.48504 * 109.47093 * 300.00042 * 21 19 17 25 25 C 1.39949 * 119.81527 * 0.25630 * 14 13 12 26 26 C 1.37603 * 119.89892 * 359.46440 * 25 14 13 27 27 H 1.08994 * 109.47357 * 181.00683 * 1 2 3 28 28 H 1.08997 * 109.46993 * 301.00930 * 1 2 3 29 29 H 1.09003 * 109.47130 * 60.99878 * 1 2 3 30 30 H 1.09001 * 110.61309 * 78.44528 * 5 4 2 31 31 H 1.09003 * 110.61807 * 201.27967 * 5 4 2 32 32 H 1.09008 * 110.89062 * 278.74380 * 6 5 4 33 33 H 1.08999 * 111.02446 * 155.07596 * 6 5 4 34 34 H 1.09003 * 109.47284 * 56.84363 * 9 7 2 35 35 H 1.09003 * 109.47208 * 296.84422 * 9 7 2 36 36 H 1.08004 * 119.94848 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.04886 * 180.02562 * 13 12 11 38 38 H 0.96993 * 120.00073 * 354.92328 * 20 19 17 39 39 H 1.07996 * 120.05039 * 179.74281 * 25 14 13 40 40 H 1.07999 * 119.94799 * 180.29557 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3652 0.7628 6 6 2.9216 -1.8905 -0.6632 7 6 2.0539 -0.7465 -1.2421 8 1 2.6600 -0.0827 -1.8587 9 6 0.8898 -1.3161 -2.0552 10 8 1.3947 -1.9391 -3.2380 11 6 0.4859 -2.4991 -4.0752 12 6 0.9111 -3.1216 -5.2449 13 6 -0.0073 -3.6903 -6.0969 14 6 -1.3710 -3.6417 -5.7861 15 6 -2.3598 -4.2499 -6.6973 16 8 -1.9894 -4.7948 -7.7220 17 6 -3.7407 -4.1990 -6.3808 18 1 -4.0794 -3.6219 -5.5331 19 6 -4.6674 -4.8987 -7.1688 20 7 -5.9460 -4.7766 -6.9359 21 14 -4.0713 -6.0049 -8.5510 22 1 -5.2389 -6.6250 -9.2274 23 1 -3.1996 -7.0693 -7.9923 24 1 -3.3016 -5.1992 -9.5327 25 6 -1.7949 -3.0095 -4.6117 26 6 -0.8692 -2.4484 -3.7623 27 1 -0.3634 -1.0274 0.0181 28 1 -0.3633 0.5294 0.8808 29 1 -0.3633 0.4983 -0.8988 30 1 4.0685 -0.6599 0.7347 31 1 3.4599 -2.1911 1.4387 32 1 2.3572 -2.8220 -0.6180 33 1 3.8348 -2.0184 -1.2443 34 1 0.2104 -0.5096 -2.3311 35 1 0.3547 -2.0532 -1.4564 36 1 1.9636 -3.1583 -5.4842 37 1 0.3236 -4.1736 -7.0043 38 1 -6.2531 -4.2616 -6.1735 39 1 -2.8466 -2.9662 -4.3702 40 1 -1.1950 -1.9645 -2.8534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233516348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -121.641794 kcal Electronic energy + Delta-G solvation = -22379.088592 eV Core-core repulsion = 18930.250664 eV Total energy + Delta-G solvation = -3448.837928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48146 -39.46512 -37.85895 -36.14943 -33.67126 -33.19999 -31.81712 -30.77830 -29.69006 -27.51961 -26.48018 -25.37535 -22.72127 -22.50545 -22.07868 -20.05320 -19.51766 -18.20196 -17.70242 -16.92677 -16.18754 -15.82480 -15.77514 -15.32455 -15.16665 -14.38617 -14.02297 -13.76641 -13.61526 -13.31276 -13.10894 -12.87288 -12.77632 -12.63922 -12.39049 -12.29440 -12.18473 -11.60564 -11.49603 -11.35127 -11.22278 -10.97010 -10.66718 -10.41422 -10.37828 -10.19378 -10.02384 -9.31590 -9.15437 -8.60494 -7.84107 -7.70676 -7.11099 -5.25357 1.60958 1.82693 3.12106 3.37135 3.49840 3.61052 3.89947 4.00429 4.15228 4.25799 4.43649 4.49097 4.56623 4.67298 4.81173 4.93142 4.95897 5.05092 5.15927 5.18572 5.26665 5.29716 5.38486 5.43928 5.44708 5.61243 5.65683 5.70702 5.75637 5.84309 5.87274 5.94109 6.11743 6.44974 6.54590 6.66223 6.82207 7.13492 7.16796 7.47677 7.65641 7.74425 8.25603 8.52995 9.80017 10.01222 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033559 B = 0.003045 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.149260 B = 9193.783692 C = 9775.080265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 H 0.075 0.925 4 O -0.374 6.374 5 C 0.045 3.955 6 C -0.146 4.146 7 C -0.119 4.119 8 H 0.094 0.906 9 C 0.068 3.932 10 O -0.318 6.318 11 C 0.119 3.881 12 C -0.164 4.164 13 C -0.051 4.051 14 C -0.138 4.138 15 C 0.382 3.618 16 O -0.587 6.587 17 C -0.560 4.560 18 H 0.077 0.923 19 C 0.053 3.947 20 N -0.800 5.800 21 Si 1.132 2.868 22 H -0.323 1.323 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.051 4.051 26 C -0.221 4.221 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.283 0.717 39 H 0.131 0.869 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.552 9.051 14.452 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.092 0.908 4 O -0.293 6.293 5 C -0.032 4.032 6 C -0.184 4.184 7 C -0.138 4.138 8 H 0.113 0.887 9 C -0.007 4.007 10 O -0.232 6.232 11 C 0.075 3.925 12 C -0.182 4.182 13 C -0.069 4.069 14 C -0.139 4.139 15 C 0.287 3.713 16 O -0.488 6.488 17 C -0.590 4.590 18 H 0.095 0.905 19 C -0.169 4.169 20 N -0.426 5.426 21 Si 0.965 3.035 22 H -0.255 1.255 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.069 4.069 26 C -0.240 4.240 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.094 0.906 39 H 0.149 0.851 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.292 7.961 13.087 20.951 hybrid contribution 0.316 1.356 1.624 2.139 sum 14.608 9.317 14.712 22.729 Atomic orbital electron populations 1.22105 0.93664 1.03392 1.02862 1.22654 0.95387 0.95480 0.84024 0.90760 1.88905 1.39832 1.67655 1.32901 1.23617 0.87570 0.96448 0.95547 1.23219 1.00720 0.98600 0.95811 1.22569 0.96842 0.97939 0.96428 0.88748 1.22958 0.95937 0.96873 0.84972 1.85919 1.34740 1.70107 1.32474 1.19124 0.87894 0.94830 0.90681 1.20297 1.00077 1.03842 0.94014 1.21232 0.92153 0.95399 0.98151 1.21270 0.95081 1.00447 0.97089 1.18246 0.88684 0.79940 0.84457 1.90008 1.81247 1.49425 1.28121 1.22084 0.93861 1.28756 1.14345 0.90521 1.27667 0.92378 0.95690 1.01123 1.70578 1.15606 1.31398 1.25027 0.82288 0.71505 0.75012 0.74742 1.25482 1.21426 1.20454 1.21331 0.99519 0.93510 0.92554 1.21130 0.92188 1.08231 1.02445 0.91354 0.91554 0.90701 0.92106 0.88798 0.90092 0.89665 0.91477 0.91543 0.85795 0.84731 0.90635 0.85139 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.39 37.16 0.31 -1.00 16 2 C 0.08 0.70 4.06 -26.16 -0.11 0.60 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 O -0.37 -3.80 11.19 -35.23 -0.39 -4.19 16 5 C 0.04 0.35 7.72 38.33 0.30 0.64 16 6 C -0.15 -1.23 6.61 -24.60 -0.16 -1.40 16 7 C -0.12 -1.06 3.31 -89.10 -0.30 -1.35 16 8 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 9 C 0.07 0.73 2.85 37.15 0.11 0.83 16 10 O -0.32 -4.46 10.00 -18.70 -0.19 -4.65 16 11 C 0.12 1.96 6.70 -38.90 -0.26 1.69 16 12 C -0.16 -2.80 9.97 -39.48 -0.39 -3.20 16 13 C -0.05 -1.02 9.59 -39.18 -0.38 -1.40 16 14 C -0.14 -3.10 5.89 -104.81 -0.62 -3.72 16 15 C 0.38 10.21 6.74 -34.43 -0.23 9.98 16 16 O -0.59 -16.78 11.92 5.08 0.06 -16.72 16 17 C -0.56 -15.34 9.27 -37.45 -0.35 -15.69 16 18 H 0.08 2.01 6.25 -52.48 -0.33 1.69 16 19 C 0.05 1.46 5.52 -17.31 -0.10 1.37 16 20 N -0.80 -21.99 13.64 55.57 0.76 -21.24 16 21 Si 1.13 29.08 25.98 -169.99 -4.42 24.66 16 22 H -0.32 -7.94 7.11 56.52 0.40 -7.54 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -7.35 6.76 56.52 0.38 -6.97 16 25 C -0.05 -1.00 9.43 -39.17 -0.37 -1.37 16 26 C -0.22 -3.66 9.01 -39.47 -0.36 -4.02 16 27 H 0.07 0.59 6.81 -51.93 -0.35 0.24 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.53 6.76 -51.93 -0.35 0.18 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.76 7.80 -51.92 -0.41 0.36 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.67 6.04 -51.93 -0.31 0.36 16 35 H 0.07 0.72 6.44 -51.93 -0.33 0.38 16 36 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 37 H 0.13 2.66 7.65 -52.49 -0.40 2.26 16 38 H 0.28 7.37 8.72 -40.82 -0.36 7.01 16 39 H 0.13 2.54 6.21 -52.49 -0.33 2.22 16 40 H 0.12 1.63 6.28 -52.49 -0.33 1.30 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -30.93 324.61 -7.46 -38.39 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.27 Total: -3.13 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.90 Total: -18.02 kcal Atomic # 7 Polarization: -21.99 SS G_CDS: 0.76 Total: -21.24 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.52 Total: -25.56 kcal Atomic # 14 Polarization: 29.08 SS G_CDS: -4.42 Total: 24.66 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.93 -7.46 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233516348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.251 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds