Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87367 * 2 1 4 4 O 1.43740 * 109.88085 * 121.16286 * 2 1 3 5 5 C 1.44382 * 106.97722 * 145.93349 * 4 2 1 6 6 C 1.55221 * 103.56711 * 320.01767 * 5 4 2 7 7 C 1.54099 * 109.87779 * 238.99437 * 2 1 3 8 8 H 1.09002 * 110.48856 * 119.74153 * 7 2 1 9 9 C 1.52993 * 110.48870 * 357.22538 * 7 2 1 10 10 O 1.42902 * 109.47236 * 176.84382 * 9 7 2 11 11 C 1.35665 * 117.00081 * 179.97438 * 10 9 7 12 12 C 1.39158 * 119.90952 * 179.97438 * 11 10 9 13 13 C 1.37586 * 120.09948 * 180.02562 * 12 11 10 14 14 C 1.39952 * 119.90306 * 0.02562 * 13 12 11 15 15 C 1.47576 * 120.09333 * 179.97438 * 14 13 12 16 16 O 1.21817 * 119.99832 * 359.97438 * 15 14 13 17 17 C 1.41757 * 120.00060 * 180.02562 * 15 14 13 18 18 H 1.08003 * 119.99669 * 6.83898 * 17 15 14 19 19 C 1.40338 * 120.00205 * 186.85019 * 17 15 14 20 20 N 1.30534 * 120.00036 * 184.84733 * 19 17 15 21 21 Si 1.86796 * 119.99834 * 4.84588 * 19 17 15 22 22 H 1.48503 * 109.47374 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47555 * 60.00153 * 21 19 17 24 24 H 1.48504 * 109.47093 * 300.00042 * 21 19 17 25 25 C 1.39949 * 119.81527 * 0.25630 * 14 13 12 26 26 C 1.37603 * 119.89892 * 359.46440 * 25 14 13 27 27 H 1.08994 * 109.47357 * 181.00683 * 1 2 3 28 28 H 1.08997 * 109.46993 * 301.00930 * 1 2 3 29 29 H 1.09003 * 109.47130 * 60.99878 * 1 2 3 30 30 H 1.09001 * 110.61309 * 78.44528 * 5 4 2 31 31 H 1.09003 * 110.61807 * 201.27967 * 5 4 2 32 32 H 1.09008 * 110.89062 * 278.74380 * 6 5 4 33 33 H 1.08999 * 111.02446 * 155.07596 * 6 5 4 34 34 H 1.09003 * 109.47284 * 56.84363 * 9 7 2 35 35 H 1.09003 * 109.47208 * 296.84422 * 9 7 2 36 36 H 1.08004 * 119.94848 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.04886 * 180.02562 * 13 12 11 38 38 H 0.96993 * 120.00073 * 354.92328 * 20 19 17 39 39 H 1.07996 * 120.05039 * 179.74281 * 25 14 13 40 40 H 1.07999 * 119.94799 * 180.29557 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3652 0.7628 6 6 2.9216 -1.8905 -0.6632 7 6 2.0539 -0.7465 -1.2421 8 1 2.6600 -0.0827 -1.8587 9 6 0.8898 -1.3161 -2.0552 10 8 1.3947 -1.9391 -3.2380 11 6 0.4859 -2.4991 -4.0752 12 6 0.9111 -3.1216 -5.2449 13 6 -0.0073 -3.6903 -6.0969 14 6 -1.3710 -3.6417 -5.7861 15 6 -2.3598 -4.2499 -6.6973 16 8 -1.9894 -4.7948 -7.7220 17 6 -3.7407 -4.1990 -6.3808 18 1 -4.0794 -3.6219 -5.5331 19 6 -4.6674 -4.8987 -7.1688 20 7 -5.9460 -4.7766 -6.9359 21 14 -4.0713 -6.0049 -8.5510 22 1 -5.2389 -6.6250 -9.2274 23 1 -3.1996 -7.0693 -7.9923 24 1 -3.3016 -5.1992 -9.5327 25 6 -1.7949 -3.0095 -4.6117 26 6 -0.8692 -2.4484 -3.7623 27 1 -0.3634 -1.0274 0.0181 28 1 -0.3633 0.5294 0.8808 29 1 -0.3633 0.4983 -0.8988 30 1 4.0685 -0.6599 0.7347 31 1 3.4599 -2.1911 1.4387 32 1 2.3572 -2.8220 -0.6180 33 1 3.8348 -2.0184 -1.2443 34 1 0.2104 -0.5096 -2.3311 35 1 0.3547 -2.0532 -1.4564 36 1 1.9636 -3.1583 -5.4842 37 1 0.3236 -4.1736 -7.0043 38 1 -6.2531 -4.2616 -6.1735 39 1 -2.8466 -2.9662 -4.3702 40 1 -1.1950 -1.9645 -2.8534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233516348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -140.267294 kcal Electronic energy + Delta-G solvation = -22379.896255 eV Core-core repulsion = 18930.250664 eV Total energy + Delta-G solvation = -3449.645590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45344 -40.55095 -39.52459 -37.74573 -35.31893 -34.46344 -32.44474 -32.23137 -31.21636 -28.88640 -27.84658 -26.16260 -24.28713 -23.45932 -23.14586 -21.56903 -20.59646 -19.69272 -19.36944 -17.78166 -17.16955 -17.06188 -16.69805 -16.63006 -16.24584 -16.06198 -15.54154 -15.36842 -14.92573 -14.68786 -14.40189 -14.32565 -14.02473 -13.83628 -13.46067 -13.32213 -13.15457 -13.10823 -12.72362 -12.47942 -12.30574 -12.10860 -11.95033 -11.85442 -11.60641 -11.50143 -11.29355 -11.28290 -10.66514 -10.03525 -9.95161 -9.21462 -9.16779 -7.38572 0.04578 0.39189 1.35105 1.52496 1.92610 2.03102 2.05612 2.38927 2.71830 2.88840 3.41998 3.47791 3.53464 3.81150 3.84803 3.92491 4.05324 4.07291 4.17790 4.22950 4.30472 4.34929 4.43608 4.49704 4.54497 4.62980 4.68447 4.73961 4.86551 5.01718 5.02690 5.04894 5.11364 5.20639 5.23743 5.28876 5.39187 5.58042 5.64485 5.73655 5.93542 6.22689 6.39061 6.42432 7.72338 7.89076 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033559 B = 0.003045 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.149260 B = 9193.783692 C = 9775.080265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 H 0.088 0.912 4 O -0.397 6.397 5 C 0.043 3.957 6 C -0.147 4.147 7 C -0.115 4.115 8 H 0.104 0.896 9 C 0.059 3.941 10 O -0.315 6.315 11 C 0.139 3.861 12 C -0.161 4.161 13 C -0.055 4.055 14 C -0.182 4.182 15 C 0.375 3.625 16 O -0.613 6.613 17 C -0.583 4.583 18 H 0.079 0.921 19 C 0.025 3.975 20 N -0.812 5.812 21 Si 1.160 2.840 22 H -0.305 1.305 23 H -0.292 1.292 24 H -0.294 1.294 25 C -0.052 4.052 26 C -0.213 4.213 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.152 0.848 37 H 0.128 0.872 38 H 0.286 0.714 39 H 0.126 0.874 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.349 10.341 16.070 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 H 0.106 0.894 4 O -0.317 6.317 5 C -0.033 4.033 6 C -0.185 4.185 7 C -0.134 4.134 8 H 0.122 0.878 9 C -0.016 4.016 10 O -0.228 6.228 11 C 0.093 3.907 12 C -0.179 4.179 13 C -0.073 4.073 14 C -0.183 4.183 15 C 0.281 3.719 16 O -0.515 6.515 17 C -0.613 4.613 18 H 0.097 0.903 19 C -0.194 4.194 20 N -0.438 5.438 21 Si 0.991 3.009 22 H -0.236 1.236 23 H -0.220 1.220 24 H -0.222 1.222 25 C -0.071 4.071 26 C -0.232 4.232 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.144 0.856 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 16.074 9.258 14.729 23.686 hybrid contribution -0.088 1.066 1.285 1.671 sum 15.985 10.324 16.013 24.870 Atomic orbital electron populations 1.22143 0.93522 1.03049 1.03555 1.22753 0.95597 0.95915 0.83349 0.89393 1.88887 1.40832 1.68094 1.33852 1.23746 0.87282 0.96995 0.95247 1.23226 1.00869 0.97931 0.96445 1.22574 0.96268 0.98159 0.96366 0.87765 1.23280 0.97230 0.97192 0.83847 1.85948 1.34296 1.69543 1.33055 1.19199 0.88111 0.93021 0.90368 1.20487 1.00888 1.02854 0.93662 1.21205 0.91625 0.95831 0.98640 1.20950 0.95268 1.03872 0.98236 1.18654 0.89534 0.79154 0.84513 1.89969 1.81889 1.50336 1.29336 1.22263 0.94632 1.29566 1.14867 0.90281 1.28216 0.92689 0.96322 1.02138 1.70569 1.15554 1.32115 1.25560 0.81925 0.71397 0.74086 0.73488 1.23574 1.21968 1.22228 1.21309 1.00018 0.93538 0.92191 1.21366 0.91792 1.07232 1.02791 0.92140 0.91427 0.89560 0.90615 0.88010 0.91306 0.88822 0.90100 0.91331 0.82993 0.85406 0.90318 0.85637 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 8.39 71.98 0.60 -1.61 16 2 C 0.08 1.15 4.06 30.96 0.13 1.28 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 O -0.40 -7.13 11.19 -148.98 -1.67 -8.80 16 5 C 0.04 0.56 7.72 72.74 0.56 1.12 16 6 C -0.15 -2.08 6.61 31.97 0.21 -1.87 16 7 C -0.12 -1.65 3.31 -9.81 -0.03 -1.69 16 8 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 9 C 0.06 1.05 2.85 71.98 0.20 1.26 16 10 O -0.31 -7.60 10.00 -89.81 -0.90 -8.50 16 11 C 0.14 4.10 6.70 22.71 0.15 4.25 16 12 C -0.16 -5.10 9.97 22.34 0.22 -4.87 16 13 C -0.05 -2.15 9.59 22.53 0.22 -1.94 16 14 C -0.18 -8.24 5.89 -19.98 -0.12 -8.36 16 15 C 0.38 20.52 6.74 25.61 0.17 20.69 16 16 O -0.61 -35.87 11.92 -4.72 -0.06 -35.93 16 17 C -0.58 -32.60 9.27 23.65 0.22 -32.38 16 18 H 0.08 4.25 6.25 -2.91 -0.02 4.24 16 19 C 0.03 1.42 5.52 85.40 0.47 1.89 16 20 N -0.81 -44.91 13.64 21.89 0.30 -44.62 16 21 Si 1.16 59.85 25.98 68.60 1.78 61.63 16 22 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 24 H -0.29 -15.85 6.76 99.48 0.67 -15.18 16 25 C -0.05 -2.01 9.43 22.53 0.21 -1.80 16 26 C -0.21 -6.47 9.01 22.34 0.20 -6.27 16 27 H 0.06 0.90 6.81 -2.39 -0.02 0.88 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.93 6.76 -2.39 -0.02 0.92 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.14 7.80 -2.38 -0.02 1.12 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.27 6.04 -2.39 -0.01 1.26 16 35 H 0.07 1.25 6.44 -2.39 -0.02 1.23 16 36 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 37 H 0.13 5.10 7.65 -2.91 -0.02 5.08 16 38 H 0.29 15.04 8.72 -92.71 -0.81 14.24 16 39 H 0.13 4.88 6.21 -2.91 -0.02 4.86 16 40 H 0.15 3.57 6.28 -2.91 -0.02 3.55 16 Total: -1.00 -66.49 324.61 3.87 -62.63 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 0.98 Total: 3.89 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 3.43 Total: -30.31 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.30 Total: -44.62 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -2.62 Total: -53.23 kcal Atomic # 14 Polarization: 59.85 SS G_CDS: 1.78 Total: 61.63 kcal Total: -66.49 3.87 -62.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233516348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.640 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds