Wall clock time and date at job start Tue Mar 31 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.99112 * 2 1 4 4 C 1.54104 * 109.87677 * 121.08579 * 2 1 3 5 5 C 1.54817 * 104.18749 * 121.45544 * 4 2 1 6 6 C 1.55001 * 102.09085 * 20.87885 * 5 4 2 7 7 H 1.09004 * 110.75363 * 81.54103 * 6 5 4 8 8 C 1.52995 * 110.61891 * 204.47499 * 6 5 4 9 9 O 1.42901 * 109.47315 * 180.52302 * 8 6 5 10 10 C 1.35661 * 116.99962 * 180.02562 * 9 8 6 11 11 C 1.39167 * 119.90740 * 179.97438 * 10 9 8 12 12 C 1.37589 * 120.09503 * 179.97438 * 11 10 9 13 13 C 1.39945 * 119.90585 * 0.03249 * 12 11 10 14 14 C 1.47570 * 120.09261 * 179.97438 * 13 12 11 15 15 O 1.21821 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.41765 * 120.00125 * 179.97438 * 14 13 12 17 17 H 1.07995 * 119.99554 * 6.90346 * 16 14 13 18 18 C 1.40337 * 119.99876 * 186.90742 * 16 14 13 19 19 N 1.30537 * 119.99748 * 174.98962 * 18 16 14 20 20 Si 1.86798 * 120.00273 * 354.98831 * 18 16 14 21 21 H 1.48498 * 109.47101 * 60.00026 * 20 18 16 22 22 H 1.48504 * 109.47174 * 299.99779 * 20 18 16 23 23 H 1.48503 * 109.47352 * 180.02562 * 20 18 16 24 24 C 1.39943 * 119.81347 * 0.24228 * 13 12 11 25 25 C 1.37597 * 119.90450 * 359.47684 * 24 13 12 26 26 O 1.43747 * 109.87704 * 238.91568 * 2 1 3 27 27 H 1.09010 * 109.47108 * 179.62936 * 1 2 3 28 28 H 1.08995 * 109.47308 * 299.62502 * 1 2 3 29 29 H 1.08997 * 109.47416 * 59.63323 * 1 2 3 30 30 H 1.09000 * 110.48691 * 240.12989 * 4 2 1 31 31 H 1.08991 * 110.49236 * 2.78006 * 4 2 1 32 32 H 1.08995 * 110.90491 * 262.68098 * 5 4 2 33 33 H 1.08995 * 110.90837 * 139.07187 * 5 4 2 34 34 H 1.09005 * 109.46955 * 60.52697 * 8 6 5 35 35 H 1.08998 * 109.47255 * 300.52699 * 8 6 5 36 36 H 1.07998 * 119.94903 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.04330 * 180.02562 * 12 11 10 38 38 H 0.96998 * 120.00143 * 5.07157 * 19 18 16 39 39 H 1.08009 * 120.04890 * 179.75476 * 24 13 12 40 40 H 1.08001 * 119.95335 * 180.25224 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7483 1.2411 5 6 2.9195 -1.8915 0.6576 6 6 3.2379 -1.3641 -0.7647 7 1 4.0691 -0.6594 -0.7383 8 6 3.5475 -2.5243 -1.7128 9 8 3.8490 -2.0107 -3.0118 10 6 4.1476 -2.9152 -3.9777 11 6 4.4501 -2.4814 -5.2649 12 6 4.7541 -3.3954 -6.2474 13 6 4.7582 -4.7631 -5.9509 14 6 5.0831 -5.7470 -7.0016 15 8 5.3478 -5.3692 -8.1291 16 6 5.0872 -7.1320 -6.6990 17 1 4.7454 -7.4747 -5.7336 18 6 5.5353 -8.0575 -7.6540 19 7 5.6317 -9.3216 -7.3427 20 14 5.9939 -7.4807 -9.3704 21 1 7.0993 -6.4930 -9.2819 22 1 4.8138 -6.8469 -10.0115 23 1 6.4327 -8.6439 -10.1828 24 6 4.4478 -5.1953 -4.6566 25 6 4.1506 -4.2743 -3.6786 26 8 2.0187 -0.6980 -1.1577 27 1 -0.3634 -1.0277 -0.0066 28 1 -0.3633 0.5080 0.8933 29 1 -0.3634 0.5195 -0.8866 30 1 2.6619 -0.0860 1.8575 31 1 1.2247 -1.1550 1.8198 32 1 2.3540 -2.8220 0.6098 33 1 3.8332 -2.0225 1.2373 34 1 2.6818 -3.1838 -1.7748 35 1 4.4038 -3.0834 -1.3354 36 1 4.4471 -1.4257 -5.4928 37 1 4.9892 -3.0578 -7.2460 38 1 5.3246 -9.6326 -6.4768 39 1 4.4459 -6.2502 -4.4246 40 1 3.9149 -4.6068 -2.6784 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233518269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:07 Heat of formation + Delta-G solvation = -125.801344 kcal Electronic energy + Delta-G solvation = -22074.355630 eV Core-core repulsion = 18625.337330 eV Total energy + Delta-G solvation = -3449.018300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24053 -39.44921 -37.81944 -36.07759 -33.17855 -32.75156 -32.53186 -30.74904 -29.72219 -28.39529 -26.55454 -24.45363 -22.66360 -22.33909 -21.33756 -21.15138 -19.60342 -17.97623 -17.67789 -17.07850 -16.29563 -16.11567 -15.26525 -15.18887 -14.79595 -14.32101 -14.01743 -13.81791 -13.54949 -13.40696 -13.00460 -12.93685 -12.70453 -12.61956 -12.28045 -12.19070 -12.06865 -11.95191 -11.57358 -11.29706 -11.23108 -11.08057 -10.74090 -10.41971 -10.29873 -10.21557 -9.94278 -9.32995 -9.09559 -8.55592 -7.84452 -7.65278 -7.09086 -5.23149 1.65914 1.87607 3.16438 3.40708 3.42474 3.63892 3.94252 4.03007 4.12786 4.35063 4.45730 4.48711 4.52847 4.67290 4.77670 4.88084 5.00516 5.06663 5.08961 5.20797 5.28328 5.30744 5.34513 5.41612 5.45819 5.54045 5.66437 5.67995 5.75501 5.83396 5.91287 5.98339 6.15460 6.50050 6.64762 6.70857 6.86570 7.17639 7.21764 7.49964 7.70968 7.76677 8.27808 8.55089 9.81665 10.03371 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038553 B = 0.002779 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.098093 B =10073.747919 C =10447.511689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 H 0.068 0.932 4 C -0.151 4.151 5 C -0.148 4.148 6 C 0.080 3.920 7 H 0.081 0.919 8 C 0.067 3.933 9 O -0.310 6.310 10 C 0.120 3.880 11 C -0.163 4.163 12 C -0.050 4.050 13 C -0.138 4.138 14 C 0.382 3.618 15 O -0.587 6.587 16 C -0.560 4.560 17 H 0.077 0.923 18 C 0.051 3.949 19 N -0.801 5.801 20 Si 1.138 2.862 21 H -0.284 1.284 22 H -0.285 1.285 23 H -0.325 1.325 24 C -0.051 4.051 25 C -0.223 4.223 26 O -0.360 6.360 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.282 0.718 39 H 0.131 0.869 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 14.673 19.122 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.011 3.989 3 H 0.086 0.914 4 C -0.189 4.189 5 C -0.185 4.185 6 C 0.022 3.978 7 H 0.098 0.902 8 C -0.008 4.008 9 O -0.224 6.224 10 C 0.076 3.924 11 C -0.181 4.181 12 C -0.069 4.069 13 C -0.139 4.139 14 C 0.287 3.713 15 O -0.488 6.488 16 C -0.590 4.590 17 H 0.095 0.905 18 C -0.170 4.170 19 N -0.427 5.427 20 Si 0.971 3.029 21 H -0.211 1.211 22 H -0.213 1.213 23 H -0.258 1.258 24 C -0.069 4.069 25 C -0.241 4.241 26 O -0.280 6.280 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.064 14.528 17.124 23.261 hybrid contribution -0.701 0.198 2.387 2.496 sum -6.765 14.726 19.511 25.363 Atomic orbital electron populations 1.21929 0.93652 1.02881 1.02382 1.22750 0.95319 0.95860 0.85011 0.91405 1.23016 1.00220 0.97480 0.98160 1.23097 1.00940 0.99434 0.95066 1.23141 0.88952 0.93532 0.92146 0.90159 1.22767 1.00747 0.95530 0.81797 1.85996 1.83961 1.34173 1.18279 1.19161 0.96639 0.87958 0.88676 1.20309 1.07255 1.00133 0.90449 1.21229 0.94730 0.92157 0.98752 1.21211 1.01708 0.94967 0.96052 1.18231 0.78264 0.88799 0.85975 1.89933 1.54823 1.80846 1.23161 1.22081 1.40518 0.93565 1.02842 0.90507 1.27683 0.89943 0.92441 1.06890 1.70595 1.31223 1.16248 1.24591 0.82170 0.78547 0.71373 0.70842 1.21145 1.21279 1.25756 1.21312 0.94179 0.99519 0.91874 1.21118 1.10459 0.92106 1.00441 1.89026 1.38922 1.67375 1.32650 0.91871 0.91357 0.91774 0.90498 0.90068 0.89984 0.89642 0.91255 0.90648 0.85719 0.84720 0.90688 0.85157 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.36 37.16 0.35 -0.76 16 2 C 0.07 0.58 4.06 -26.15 -0.11 0.47 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.15 -0.95 6.64 -25.20 -0.17 -1.12 16 5 C -0.15 -1.03 6.59 -24.72 -0.16 -1.20 16 6 C 0.08 0.80 3.63 -25.68 -0.09 0.71 16 7 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 8 C 0.07 0.79 4.48 37.16 0.17 0.95 16 9 O -0.31 -4.86 10.12 -19.63 -0.20 -5.06 16 10 C 0.12 2.10 6.70 -38.89 -0.26 1.84 16 11 C -0.16 -2.94 9.97 -39.47 -0.39 -3.34 16 12 C -0.05 -1.04 9.59 -39.18 -0.38 -1.42 16 13 C -0.14 -3.18 5.89 -104.81 -0.62 -3.80 16 14 C 0.38 10.37 6.78 -34.43 -0.23 10.13 16 15 O -0.59 -16.97 11.95 5.08 0.06 -16.91 16 16 C -0.56 -15.48 9.27 -37.45 -0.35 -15.83 16 17 H 0.08 2.04 6.25 -52.49 -0.33 1.71 16 18 C 0.05 1.44 5.52 -17.31 -0.10 1.35 16 19 N -0.80 -22.15 13.64 55.57 0.76 -21.40 16 20 Si 1.14 29.58 25.78 -169.99 -4.38 25.20 16 21 H -0.28 -7.54 6.99 56.52 0.40 -7.14 16 22 H -0.29 -7.54 7.09 56.52 0.40 -7.14 16 23 H -0.33 -8.09 7.11 56.52 0.40 -7.68 16 24 C -0.05 -1.02 9.43 -39.18 -0.37 -1.39 16 25 C -0.22 -3.82 9.01 -39.47 -0.36 -4.18 16 26 O -0.36 -4.37 10.88 -36.18 -0.39 -4.76 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.43 7.70 -51.93 -0.40 0.03 16 32 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 35 H 0.08 0.75 7.65 -51.93 -0.40 0.35 16 36 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.13 2.74 7.65 -52.49 -0.40 2.34 16 38 H 0.28 7.40 8.72 -40.82 -0.36 7.04 16 39 H 0.13 2.58 6.21 -52.48 -0.33 2.25 16 40 H 0.12 1.67 6.28 -52.49 -0.33 1.34 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -31.98 331.69 -7.76 -39.74 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -5.54 Total: -4.25 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.06 Total: -17.56 kcal Atomic # 7 Polarization: -22.15 SS G_CDS: 0.76 Total: -21.40 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.53 Total: -26.73 kcal Atomic # 14 Polarization: 29.58 SS G_CDS: -4.38 Total: 25.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.98 -7.76 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233518269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.057 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds