Wall clock time and date at job start Tue Mar 31 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.99112 * 2 1 4 4 C 1.54104 * 109.87677 * 121.08579 * 2 1 3 5 5 C 1.54817 * 104.18749 * 121.45544 * 4 2 1 6 6 C 1.55001 * 102.09085 * 20.87885 * 5 4 2 7 7 H 1.09004 * 110.75363 * 81.54103 * 6 5 4 8 8 C 1.52995 * 110.61891 * 204.47499 * 6 5 4 9 9 O 1.42901 * 109.47315 * 180.52302 * 8 6 5 10 10 C 1.35661 * 116.99962 * 180.02562 * 9 8 6 11 11 C 1.39167 * 119.90740 * 179.97438 * 10 9 8 12 12 C 1.37589 * 120.09503 * 179.97438 * 11 10 9 13 13 C 1.39945 * 119.90585 * 0.03249 * 12 11 10 14 14 C 1.47570 * 120.09261 * 179.97438 * 13 12 11 15 15 O 1.21821 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.41765 * 120.00125 * 179.97438 * 14 13 12 17 17 H 1.07995 * 119.99554 * 6.90346 * 16 14 13 18 18 C 1.40337 * 119.99876 * 186.90742 * 16 14 13 19 19 N 1.30537 * 119.99748 * 174.98962 * 18 16 14 20 20 Si 1.86798 * 120.00273 * 354.98831 * 18 16 14 21 21 H 1.48498 * 109.47101 * 60.00026 * 20 18 16 22 22 H 1.48504 * 109.47174 * 299.99779 * 20 18 16 23 23 H 1.48503 * 109.47352 * 180.02562 * 20 18 16 24 24 C 1.39943 * 119.81347 * 0.24228 * 13 12 11 25 25 C 1.37597 * 119.90450 * 359.47684 * 24 13 12 26 26 O 1.43747 * 109.87704 * 238.91568 * 2 1 3 27 27 H 1.09010 * 109.47108 * 179.62936 * 1 2 3 28 28 H 1.08995 * 109.47308 * 299.62502 * 1 2 3 29 29 H 1.08997 * 109.47416 * 59.63323 * 1 2 3 30 30 H 1.09000 * 110.48691 * 240.12989 * 4 2 1 31 31 H 1.08991 * 110.49236 * 2.78006 * 4 2 1 32 32 H 1.08995 * 110.90491 * 262.68098 * 5 4 2 33 33 H 1.08995 * 110.90837 * 139.07187 * 5 4 2 34 34 H 1.09005 * 109.46955 * 60.52697 * 8 6 5 35 35 H 1.08998 * 109.47255 * 300.52699 * 8 6 5 36 36 H 1.07998 * 119.94903 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.04330 * 180.02562 * 12 11 10 38 38 H 0.96998 * 120.00143 * 5.07157 * 19 18 16 39 39 H 1.08009 * 120.04890 * 179.75476 * 24 13 12 40 40 H 1.08001 * 119.95335 * 180.25224 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7483 1.2411 5 6 2.9195 -1.8915 0.6576 6 6 3.2379 -1.3641 -0.7647 7 1 4.0691 -0.6594 -0.7383 8 6 3.5475 -2.5243 -1.7128 9 8 3.8490 -2.0107 -3.0118 10 6 4.1476 -2.9152 -3.9777 11 6 4.4501 -2.4814 -5.2649 12 6 4.7541 -3.3954 -6.2474 13 6 4.7582 -4.7631 -5.9509 14 6 5.0831 -5.7470 -7.0016 15 8 5.3478 -5.3692 -8.1291 16 6 5.0872 -7.1320 -6.6990 17 1 4.7454 -7.4747 -5.7336 18 6 5.5353 -8.0575 -7.6540 19 7 5.6317 -9.3216 -7.3427 20 14 5.9939 -7.4807 -9.3704 21 1 7.0993 -6.4930 -9.2819 22 1 4.8138 -6.8469 -10.0115 23 1 6.4327 -8.6439 -10.1828 24 6 4.4478 -5.1953 -4.6566 25 6 4.1506 -4.2743 -3.6786 26 8 2.0187 -0.6980 -1.1577 27 1 -0.3634 -1.0277 -0.0066 28 1 -0.3633 0.5080 0.8933 29 1 -0.3634 0.5195 -0.8866 30 1 2.6619 -0.0860 1.8575 31 1 1.2247 -1.1550 1.8198 32 1 2.3540 -2.8220 0.6098 33 1 3.8332 -2.0225 1.2373 34 1 2.6818 -3.1838 -1.7748 35 1 4.4038 -3.0834 -1.3354 36 1 4.4471 -1.4257 -5.4928 37 1 4.9892 -3.0578 -7.2460 38 1 5.3246 -9.6326 -6.4768 39 1 4.4459 -6.2502 -4.4246 40 1 3.9149 -4.6068 -2.6784 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233518269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:06 Heat of formation + Delta-G solvation = -145.254147 kcal Electronic energy + Delta-G solvation = -22075.199167 eV Core-core repulsion = 18625.337330 eV Total energy + Delta-G solvation = -3449.861837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32944 -40.48928 -39.55182 -37.73236 -35.32112 -33.46427 -33.23439 -32.20730 -31.25307 -29.39698 -28.36084 -25.29315 -24.25575 -23.49443 -22.25286 -21.88393 -21.40222 -19.69802 -19.25096 -17.85305 -17.34773 -17.11051 -17.00458 -16.25585 -16.08141 -15.96296 -15.36977 -15.29287 -14.95652 -14.63366 -14.45819 -14.23643 -14.06309 -13.82513 -13.45606 -13.25797 -13.14678 -12.99264 -12.62491 -12.51664 -12.40031 -12.15681 -11.98795 -11.89697 -11.68452 -11.55352 -11.37335 -11.22401 -10.66868 -10.04267 -9.97592 -9.21685 -9.17999 -7.38613 0.04164 0.38550 1.35850 1.52672 1.93493 2.02458 2.06334 2.38877 2.70949 2.75382 3.40645 3.53970 3.70806 3.78933 3.89731 3.93574 4.00974 4.04396 4.09289 4.21978 4.35209 4.39050 4.42721 4.47719 4.48476 4.63577 4.71019 4.83039 4.90718 5.01707 5.03004 5.09422 5.16229 5.20007 5.27518 5.28460 5.39366 5.57119 5.63962 5.72905 5.99260 6.22146 6.38970 6.42004 7.71188 7.89252 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038553 B = 0.002779 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.098093 B =10073.747919 C =10447.511689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 H 0.070 0.930 4 C -0.145 4.145 5 C -0.141 4.141 6 C 0.075 3.925 7 H 0.082 0.918 8 C 0.056 3.944 9 O -0.317 6.317 10 C 0.137 3.863 11 C -0.163 4.163 12 C -0.054 4.054 13 C -0.181 4.181 14 C 0.375 3.625 15 O -0.613 6.613 16 C -0.581 4.581 17 H 0.081 0.919 18 C 0.025 3.975 19 N -0.810 5.810 20 Si 1.165 2.835 21 H -0.297 1.297 22 H -0.297 1.297 23 H -0.306 1.306 24 C -0.050 4.050 25 C -0.212 4.212 26 O -0.396 6.396 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.128 0.872 38 H 0.286 0.714 39 H 0.129 0.871 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 15.828 21.973 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.001 3.999 3 H 0.088 0.912 4 C -0.183 4.183 5 C -0.179 4.179 6 C 0.018 3.982 7 H 0.100 0.900 8 C -0.019 4.019 9 O -0.231 6.231 10 C 0.091 3.909 11 C -0.182 4.182 12 C -0.072 4.072 13 C -0.182 4.182 14 C 0.281 3.719 15 O -0.515 6.515 16 C -0.611 4.611 17 H 0.099 0.901 18 C -0.194 4.194 19 N -0.436 5.436 20 Si 0.997 3.003 21 H -0.225 1.225 22 H -0.225 1.225 23 H -0.237 1.237 24 C -0.069 4.069 25 C -0.231 4.231 26 O -0.317 6.317 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.505 15.665 20.001 26.225 hybrid contribution -0.642 0.003 1.666 1.786 sum -7.147 15.668 21.668 27.677 Atomic orbital electron populations 1.21946 0.93200 1.02654 1.02910 1.22978 0.95810 0.96058 0.85087 0.91179 1.23022 1.00700 0.97274 0.97300 1.23115 1.02037 0.99562 0.93181 1.23277 0.88567 0.93123 0.93245 0.89993 1.23179 1.01811 0.96790 0.80115 1.86021 1.83240 1.34254 1.19558 1.19261 0.94417 0.88343 0.88902 1.20481 1.06510 1.00810 0.90378 1.21189 0.95060 0.91691 0.99276 1.20921 1.05904 0.95075 0.96327 1.18646 0.77056 0.89665 0.86523 1.89897 1.55643 1.81491 1.24506 1.22258 1.41452 0.94216 1.03188 0.90115 1.28194 0.90203 0.92765 1.08257 1.70582 1.31859 1.16158 1.25050 0.81816 0.77459 0.71218 0.69826 1.22518 1.22501 1.23726 1.21318 0.94044 1.00108 0.91403 1.21377 1.08890 0.91468 1.01338 1.88988 1.39770 1.68051 1.34859 0.92395 0.89090 0.93054 0.88887 0.88904 0.89774 0.87570 0.90989 0.88301 0.83427 0.85393 0.90283 0.85323 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.36 71.98 0.67 -1.27 16 2 C 0.06 0.85 4.06 30.97 0.13 0.98 16 3 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.15 -1.34 6.64 31.59 0.21 -1.13 16 5 C -0.14 -1.47 6.59 31.90 0.21 -1.26 16 6 C 0.08 1.30 3.63 31.28 0.11 1.42 16 7 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 8 C 0.06 1.12 4.48 71.98 0.32 1.44 16 9 O -0.32 -9.02 10.12 -88.86 -0.90 -9.92 16 10 C 0.14 4.40 6.70 22.71 0.15 4.55 16 11 C -0.16 -5.63 9.97 22.34 0.22 -5.41 16 12 C -0.05 -2.22 9.59 22.53 0.22 -2.00 16 13 C -0.18 -8.40 5.89 -19.99 -0.12 -8.52 16 14 C 0.37 20.76 6.78 25.61 0.17 20.94 16 15 O -0.61 -36.34 11.95 -4.74 -0.06 -36.40 16 16 C -0.58 -32.68 9.27 23.65 0.22 -32.46 16 17 H 0.08 4.35 6.25 -2.91 -0.02 4.33 16 18 C 0.02 1.40 5.52 85.40 0.47 1.88 16 19 N -0.81 -44.90 13.64 21.89 0.30 -44.60 16 20 Si 1.16 60.83 25.78 68.60 1.77 62.60 16 21 H -0.30 -15.99 6.99 99.48 0.70 -15.29 16 22 H -0.30 -15.90 7.09 99.48 0.71 -15.20 16 23 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 24 C -0.05 -1.99 9.43 22.53 0.21 -1.77 16 25 C -0.21 -6.72 9.01 22.34 0.20 -6.51 16 26 O -0.40 -8.91 10.88 -148.08 -1.61 -10.52 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.66 7.70 -2.39 -0.02 0.64 16 32 H 0.08 0.85 8.06 -2.39 -0.02 0.83 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 1.44 7.65 -2.38 -0.02 1.42 16 35 H 0.10 1.55 7.65 -2.39 -0.02 1.53 16 36 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.13 5.31 7.65 -2.91 -0.02 5.29 16 38 H 0.29 15.05 8.72 -92.71 -0.81 14.25 16 39 H 0.13 5.03 6.21 -2.91 -0.02 5.01 16 40 H 0.16 3.73 6.28 -2.91 -0.02 3.72 16 Total: -1.00 -69.39 331.69 3.89 -65.50 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 0.99 Total: 2.47 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 3.41 Total: -29.13 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.30 Total: -44.60 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -2.57 Total: -56.84 kcal Atomic # 14 Polarization: 60.83 SS G_CDS: 1.77 Total: 62.60 kcal Total: -69.39 3.89 -65.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233518269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.757 kcal (2) G-P(sol) polarization free energy of solvation -69.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds