Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.57225 * 2 1 4 4 C 1.53094 * 109.51869 * 239.83537 * 2 1 3 5 5 O 1.42902 * 109.41228 * 182.48625 * 4 2 1 6 6 C 1.42901 * 114.09801 * 61.16123 * 5 4 2 7 7 C 1.53100 * 109.41608 * 298.84355 * 6 5 4 8 8 C 1.53174 * 109.16115 * 57.60472 * 7 6 5 9 9 H 1.09002 * 109.54037 * 183.06576 * 8 7 6 10 10 O 1.42898 * 109.54353 * 62.89346 * 8 7 6 11 11 C 1.35659 * 117.00332 * 84.75645 * 10 8 7 12 12 C 1.39162 * 119.90684 * 354.62506 * 11 10 8 13 13 C 1.37593 * 120.09632 * 180.02562 * 12 11 10 14 14 C 1.39943 * 119.90172 * 359.97438 * 13 12 11 15 15 C 1.47572 * 120.09131 * 180.02562 * 14 13 12 16 16 O 1.21822 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.41761 * 120.00246 * 180.02562 * 15 14 13 18 18 H 1.08003 * 119.99602 * 359.97438 * 17 15 14 19 19 C 1.40344 * 120.00244 * 179.97438 * 17 15 14 20 20 N 1.30533 * 120.00003 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99870 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47159 * 90.00625 * 21 19 17 23 23 H 1.48508 * 109.47168 * 210.00139 * 21 19 17 24 24 H 1.48496 * 109.47649 * 330.00308 * 21 19 17 25 25 C 1.39946 * 119.81755 * 0.27646 * 14 13 12 26 26 C 1.37598 * 119.90350 * 359.46762 * 25 14 13 27 27 H 1.09004 * 109.47278 * 299.84623 * 1 2 3 28 28 H 1.08999 * 109.47092 * 59.84333 * 1 2 3 29 29 H 1.09001 * 109.47244 * 179.84621 * 1 2 3 30 30 H 1.09000 * 109.47958 * 62.50841 * 4 2 1 31 31 H 1.09000 * 109.48158 * 302.47187 * 4 2 1 32 32 H 1.08999 * 109.48337 * 178.86113 * 6 5 4 33 33 H 1.09004 * 109.48169 * 58.81992 * 6 5 4 34 34 H 1.08998 * 109.51777 * 297.69983 * 7 6 5 35 35 H 1.08996 * 109.57354 * 177.54850 * 7 6 5 36 36 H 1.08006 * 119.95140 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.04858 * 179.97438 * 13 12 11 38 38 H 0.96999 * 119.99787 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.05116 * 179.69434 * 25 14 13 40 40 H 1.07995 * 119.95449 * 180.25599 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7251 -1.2476 5 8 3.4694 -0.7745 -1.2163 6 6 4.0043 -1.4817 -0.0956 7 6 3.5715 -0.7872 1.1983 8 6 2.0418 -0.7253 1.2483 9 1 1.7279 -0.1837 2.1407 10 8 1.5106 -2.0514 1.2824 11 6 1.4241 -2.6493 2.4970 12 6 1.9459 -2.0159 3.6209 13 6 1.8608 -2.6190 4.8547 14 6 1.2478 -3.8709 4.9784 15 6 1.1536 -4.5213 6.2998 16 8 1.6095 -3.9681 7.2848 17 6 0.5328 -5.7897 6.4229 18 1 0.1283 -6.2799 5.5496 19 6 0.4437 -6.4085 7.6794 20 7 0.9322 -5.8158 8.7348 21 14 -0.3750 -8.0796 7.8416 22 1 0.6411 -9.1480 7.6641 23 1 -0.9906 -8.2007 9.1876 24 1 -1.4264 -8.2188 6.8022 25 6 0.7290 -4.5068 3.8448 26 6 0.8137 -3.8943 2.6156 27 1 -0.3634 0.5115 0.8914 28 1 -0.3633 0.5163 -0.8886 29 1 -0.3634 -1.0277 -0.0028 30 1 1.7159 -0.1887 -2.1388 31 1 1.6430 -1.7394 -1.2675 32 1 5.0925 -1.4905 -0.1570 33 1 3.6314 -2.5060 -0.1005 34 1 3.9780 0.2239 1.2224 35 1 3.9417 -1.3490 2.0558 36 1 2.4192 -1.0498 3.5244 37 1 2.2664 -2.1269 5.7263 38 1 0.8703 -6.2433 9.6033 39 1 0.2595 -5.4752 3.9352 40 1 0.4099 -4.3824 1.7410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = -110.600707 kcal Electronic energy + Delta-G solvation = -22903.268708 eV Core-core repulsion = 19454.909557 eV Total energy + Delta-G solvation = -3448.359151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62124 -38.78027 -37.30563 -35.72805 -33.99893 -32.71250 -32.07395 -30.49408 -29.43544 -27.00299 -26.64118 -25.24735 -22.98188 -22.40583 -22.01323 -20.07216 -19.49605 -17.74997 -16.73060 -16.38222 -16.26311 -15.76286 -15.57233 -15.19620 -14.56055 -14.36650 -14.17952 -13.74922 -13.54249 -13.16467 -13.00256 -12.70841 -12.53146 -12.25432 -12.20635 -11.92453 -11.88592 -11.69298 -11.33396 -11.22563 -11.17774 -10.90075 -10.59209 -10.52530 -10.37173 -10.25763 -9.96876 -9.58137 -8.99739 -8.45277 -7.50770 -7.49149 -6.32919 -4.93194 1.82082 1.97381 3.03388 3.11260 3.14513 3.30409 3.71339 3.98571 3.99990 4.38866 4.48104 4.60041 4.63348 4.74391 5.02948 5.10361 5.22101 5.30630 5.37479 5.38697 5.45403 5.53255 5.59820 5.63506 5.78884 5.79155 5.80665 5.85885 5.91343 6.03240 6.07792 6.11356 6.32352 6.60772 6.82930 7.01398 7.01745 7.22163 7.31845 7.35858 7.81269 8.00905 8.76665 8.81774 10.28705 10.50757 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033500 B = 0.003281 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.629545 B = 8532.965322 C = 8726.113747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.067 3.933 5 O -0.385 6.385 6 C 0.065 3.935 7 C -0.183 4.183 8 C 0.087 3.913 9 H 0.078 0.922 10 O -0.309 6.309 11 C 0.113 3.887 12 C -0.221 4.221 13 C -0.056 4.056 14 C -0.136 4.136 15 C 0.388 3.612 16 O -0.544 6.544 17 C -0.517 4.517 18 H 0.074 0.926 19 C 0.079 3.921 20 N -0.735 5.735 21 Si 0.906 3.094 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.057 4.057 26 C -0.165 4.165 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.274 0.726 39 H 0.136 0.864 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 8.328 -16.785 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 H 0.110 0.890 4 C -0.010 4.010 5 O -0.304 6.304 6 C -0.011 4.011 7 C -0.221 4.221 8 C 0.031 3.969 9 H 0.096 0.904 10 O -0.223 6.223 11 C 0.068 3.932 12 C -0.239 4.239 13 C -0.074 4.074 14 C -0.138 4.138 15 C 0.285 3.715 16 O -0.435 6.435 17 C -0.548 4.548 18 H 0.092 0.908 19 C -0.144 4.144 20 N -0.364 5.364 21 Si 0.730 3.270 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.075 4.075 26 C -0.184 4.184 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.085 0.915 39 H 0.153 0.847 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.216 8.651 -16.475 18.648 hybrid contribution -0.479 -0.756 0.442 0.998 sum 0.738 7.895 -16.033 17.886 Atomic orbital electron populations 1.21713 0.93600 1.03113 1.01899 1.21877 0.97390 0.99720 0.94740 0.89010 1.22608 0.80954 1.00408 0.96994 1.87895 1.20366 1.76472 1.45657 1.22482 0.98732 0.95254 0.84655 1.22771 0.96118 1.02990 1.00194 1.22384 0.92766 0.82787 0.98988 0.90433 1.85963 1.79495 1.28954 1.27913 1.19098 0.97214 0.93305 0.83558 1.21107 1.08016 1.01611 0.93196 1.21187 0.95558 0.94520 0.96162 1.21816 0.98286 0.95007 0.98643 1.18075 0.81667 0.87162 0.84642 1.90501 1.48038 1.66288 1.38638 1.20940 1.35505 1.04056 0.94339 0.90766 1.26015 0.93969 0.98956 0.95475 1.69961 1.30954 1.35956 0.99517 0.86375 0.80063 0.81975 0.78564 1.19366 1.20152 1.18468 1.21397 0.96176 0.99326 0.90596 1.20334 1.05170 0.94400 0.98462 0.92304 0.92346 0.91403 0.88991 0.92177 0.88898 0.92311 0.89914 0.89666 0.86332 0.85579 0.91486 0.84656 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.03 37.16 0.34 -0.99 16 2 C -0.12 -1.14 2.76 -90.48 -0.25 -1.39 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.07 0.67 5.98 37.21 0.22 0.89 16 5 O -0.39 -4.47 10.77 -35.23 -0.38 -4.85 16 6 C 0.07 0.71 6.69 37.21 0.25 0.96 16 7 C -0.18 -1.97 5.43 -26.59 -0.14 -2.11 16 8 C 0.09 1.01 1.91 -26.55 -0.05 0.96 16 9 H 0.08 0.91 6.32 -51.93 -0.33 0.58 16 10 O -0.31 -4.36 7.96 -18.68 -0.15 -4.51 16 11 C 0.11 1.87 6.61 -38.89 -0.26 1.61 16 12 C -0.22 -3.80 8.20 -39.47 -0.32 -4.12 16 13 C -0.06 -1.17 9.59 -39.18 -0.38 -1.55 16 14 C -0.14 -3.18 5.89 -104.81 -0.62 -3.80 16 15 C 0.39 10.97 6.91 -34.43 -0.24 10.73 16 16 O -0.54 -17.30 14.89 5.08 0.08 -17.23 16 17 C -0.52 -14.10 8.86 -37.45 -0.33 -14.43 16 18 H 0.07 1.82 6.01 -52.48 -0.32 1.50 16 19 C 0.08 2.12 5.50 -17.31 -0.10 2.02 16 20 N -0.74 -21.08 11.73 55.57 0.65 -20.43 16 21 Si 0.91 19.08 29.56 -169.99 -5.03 14.05 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.06 -1.13 9.43 -39.18 -0.37 -1.50 16 26 C -0.17 -2.86 9.97 -39.47 -0.39 -3.25 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.99 6.94 -51.93 -0.36 0.63 16 36 H 0.12 1.72 5.45 -52.48 -0.29 1.44 16 37 H 0.13 2.72 7.65 -52.49 -0.40 2.31 16 38 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 39 H 0.14 2.58 6.19 -52.49 -0.33 2.26 16 40 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -32.23 325.99 -7.87 -40.10 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.32 Total: 3.91 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.64 Total: -15.96 kcal Atomic # 7 Polarization: -21.08 SS G_CDS: 0.65 Total: -20.43 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.45 Total: -26.59 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.23 -7.87 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.497 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds