Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.57225 * 2 1 4 4 C 1.53094 * 109.51869 * 239.83537 * 2 1 3 5 5 O 1.42902 * 109.41228 * 182.48625 * 4 2 1 6 6 C 1.42901 * 114.09801 * 61.16123 * 5 4 2 7 7 C 1.53100 * 109.41608 * 298.84355 * 6 5 4 8 8 C 1.53174 * 109.16115 * 57.60472 * 7 6 5 9 9 H 1.09002 * 109.54037 * 183.06576 * 8 7 6 10 10 O 1.42898 * 109.54353 * 62.89346 * 8 7 6 11 11 C 1.35659 * 117.00332 * 84.75645 * 10 8 7 12 12 C 1.39162 * 119.90684 * 354.62506 * 11 10 8 13 13 C 1.37593 * 120.09632 * 180.02562 * 12 11 10 14 14 C 1.39943 * 119.90172 * 359.97438 * 13 12 11 15 15 C 1.47572 * 120.09131 * 180.02562 * 14 13 12 16 16 O 1.21822 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.41761 * 120.00246 * 180.02562 * 15 14 13 18 18 H 1.08003 * 119.99602 * 359.97438 * 17 15 14 19 19 C 1.40344 * 120.00244 * 179.97438 * 17 15 14 20 20 N 1.30533 * 120.00003 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99870 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47159 * 90.00625 * 21 19 17 23 23 H 1.48508 * 109.47168 * 210.00139 * 21 19 17 24 24 H 1.48496 * 109.47649 * 330.00308 * 21 19 17 25 25 C 1.39946 * 119.81755 * 0.27646 * 14 13 12 26 26 C 1.37598 * 119.90350 * 359.46762 * 25 14 13 27 27 H 1.09004 * 109.47278 * 299.84623 * 1 2 3 28 28 H 1.08999 * 109.47092 * 59.84333 * 1 2 3 29 29 H 1.09001 * 109.47244 * 179.84621 * 1 2 3 30 30 H 1.09000 * 109.47958 * 62.50841 * 4 2 1 31 31 H 1.09000 * 109.48158 * 302.47187 * 4 2 1 32 32 H 1.08999 * 109.48337 * 178.86113 * 6 5 4 33 33 H 1.09004 * 109.48169 * 58.81992 * 6 5 4 34 34 H 1.08998 * 109.51777 * 297.69983 * 7 6 5 35 35 H 1.08996 * 109.57354 * 177.54850 * 7 6 5 36 36 H 1.08006 * 119.95140 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.04858 * 179.97438 * 13 12 11 38 38 H 0.96999 * 119.99787 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.05116 * 179.69434 * 25 14 13 40 40 H 1.07995 * 119.95449 * 180.25599 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7251 -1.2476 5 8 3.4694 -0.7745 -1.2163 6 6 4.0043 -1.4817 -0.0956 7 6 3.5715 -0.7872 1.1983 8 6 2.0418 -0.7253 1.2483 9 1 1.7279 -0.1837 2.1407 10 8 1.5106 -2.0514 1.2824 11 6 1.4241 -2.6493 2.4970 12 6 1.9459 -2.0159 3.6209 13 6 1.8608 -2.6190 4.8547 14 6 1.2478 -3.8709 4.9784 15 6 1.1536 -4.5213 6.2998 16 8 1.6095 -3.9681 7.2848 17 6 0.5328 -5.7897 6.4229 18 1 0.1283 -6.2799 5.5496 19 6 0.4437 -6.4085 7.6794 20 7 0.9322 -5.8158 8.7348 21 14 -0.3750 -8.0796 7.8416 22 1 0.6411 -9.1480 7.6641 23 1 -0.9906 -8.2007 9.1876 24 1 -1.4264 -8.2188 6.8022 25 6 0.7290 -4.5068 3.8448 26 6 0.8137 -3.8943 2.6156 27 1 -0.3634 0.5115 0.8914 28 1 -0.3633 0.5163 -0.8886 29 1 -0.3634 -1.0277 -0.0028 30 1 1.7159 -0.1887 -2.1388 31 1 1.6430 -1.7394 -1.2675 32 1 5.0925 -1.4905 -0.1570 33 1 3.6314 -2.5060 -0.1005 34 1 3.9780 0.2239 1.2224 35 1 3.9417 -1.3490 2.0558 36 1 2.4192 -1.0498 3.5244 37 1 2.2664 -2.1269 5.7263 38 1 0.8703 -6.2433 9.6033 39 1 0.2595 -5.4752 3.9352 40 1 0.4099 -4.3824 1.7410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = -130.529611 kcal Electronic energy + Delta-G solvation = -22904.132890 eV Core-core repulsion = 19454.909557 eV Total energy + Delta-G solvation = -3449.223333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71949 -40.07791 -38.85634 -37.40482 -34.92222 -34.76249 -32.99247 -32.00154 -31.05772 -28.61198 -27.77837 -26.16815 -24.48798 -23.55871 -23.22761 -21.58951 -20.84781 -19.01267 -18.51107 -17.50050 -17.33614 -17.09620 -16.88114 -16.28978 -16.03899 -15.54746 -15.49581 -15.07233 -14.74500 -14.64343 -14.43837 -14.22693 -13.87814 -13.50714 -13.41371 -13.20611 -13.00083 -12.91535 -12.79221 -12.68561 -12.41127 -12.28309 -12.04980 -12.00095 -11.60924 -11.34509 -11.31881 -10.99385 -10.43992 -9.94752 -9.62751 -9.03367 -8.35094 -7.08186 0.22508 0.46217 1.38318 1.38712 1.55569 2.14607 2.20912 2.21335 2.84868 2.92643 3.54519 3.63481 3.74219 3.77917 3.87785 3.91446 3.96353 4.25166 4.26742 4.28919 4.46436 4.49378 4.52724 4.62028 4.69051 4.73028 4.74427 4.81301 4.91335 5.00967 5.05294 5.10807 5.13893 5.19475 5.30594 5.39167 5.45075 5.74699 5.80515 5.97822 6.20819 6.46490 6.69317 6.79720 8.24408 8.48514 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033500 B = 0.003281 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.629545 B = 8532.965322 C = 8726.113747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 H 0.109 0.891 4 C 0.064 3.936 5 O -0.396 6.396 6 C 0.064 3.936 7 C -0.181 4.181 8 C 0.076 3.924 9 H 0.080 0.920 10 O -0.303 6.303 11 C 0.134 3.866 12 C -0.210 4.210 13 C -0.067 4.067 14 C -0.180 4.180 15 C 0.364 3.636 16 O -0.602 6.602 17 C -0.544 4.544 18 H 0.097 0.903 19 C 0.021 3.979 20 N -0.789 5.789 21 Si 0.996 3.004 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.244 1.244 25 C -0.054 4.054 26 C -0.160 4.160 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.282 0.718 39 H 0.141 0.859 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 8.271 -19.728 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 H 0.127 0.873 4 C -0.013 4.013 5 O -0.314 6.314 6 C -0.012 4.012 7 C -0.218 4.218 8 C 0.020 3.980 9 H 0.098 0.902 10 O -0.217 6.217 11 C 0.088 3.912 12 C -0.229 4.229 13 C -0.086 4.086 14 C -0.181 4.181 15 C 0.264 3.736 16 O -0.497 6.497 17 C -0.574 4.574 18 H 0.115 0.885 19 C -0.197 4.197 20 N -0.418 5.418 21 Si 0.814 3.186 22 H -0.182 1.182 23 H -0.194 1.194 24 H -0.167 1.167 25 C -0.072 4.072 26 C -0.179 4.179 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.400 8.607 -19.461 21.283 hybrid contribution -0.179 -0.588 1.185 1.335 sum 0.221 8.018 -18.276 19.959 Atomic orbital electron populations 1.21705 0.93108 1.02465 1.02895 1.21900 0.97726 1.00135 0.93336 0.87282 1.22741 0.80193 1.00255 0.98075 1.87891 1.21272 1.76431 1.45855 1.22518 0.99631 0.94464 0.84623 1.22765 0.95369 1.03953 0.99744 1.22744 0.93490 0.81407 1.00386 0.90191 1.86005 1.79118 1.30395 1.26153 1.19155 0.94988 0.92864 0.84159 1.21243 1.07419 1.02439 0.91775 1.21106 0.96079 0.94209 0.97188 1.21445 1.02424 0.96736 0.97533 1.18817 0.80820 0.87881 0.86071 1.90437 1.50512 1.67721 1.41000 1.21474 1.35742 1.04353 0.95837 0.88530 1.27318 0.94003 1.03863 0.94550 1.70114 1.32475 1.38608 1.00564 0.85037 0.79122 0.75262 0.79131 1.18243 1.19385 1.16687 1.21385 0.95756 0.99486 0.90543 1.20567 1.04472 0.94544 0.98273 0.92470 0.90297 0.92826 0.86858 0.93198 0.87494 0.93659 0.88081 0.90622 0.83484 0.87549 0.90772 0.84157 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 71.98 0.65 -1.52 16 2 C -0.11 -1.79 2.76 -10.70 -0.03 -1.82 16 3 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.06 1.07 5.98 72.01 0.43 1.50 16 5 O -0.40 -8.08 10.77 -148.98 -1.60 -9.69 16 6 C 0.06 1.25 6.69 72.02 0.48 1.73 16 7 C -0.18 -3.40 5.43 30.69 0.17 -3.24 16 8 C 0.08 1.53 1.91 30.71 0.06 1.59 16 9 H 0.08 1.63 6.32 -2.39 -0.02 1.61 16 10 O -0.30 -7.73 7.96 -89.75 -0.71 -8.45 16 11 C 0.13 4.18 6.61 22.71 0.15 4.33 16 12 C -0.21 -7.05 8.20 22.34 0.18 -6.87 16 13 C -0.07 -2.92 9.59 22.53 0.22 -2.71 16 14 C -0.18 -8.74 5.89 -19.99 -0.12 -8.86 16 15 C 0.36 21.73 6.91 25.61 0.18 21.90 16 16 O -0.60 -41.02 14.89 -4.74 -0.07 -41.09 16 17 C -0.54 -30.56 8.86 23.65 0.21 -30.35 16 18 H 0.10 4.77 6.01 -2.91 -0.02 4.75 16 19 C 0.02 1.17 5.50 85.40 0.47 1.64 16 20 N -0.79 -47.20 11.73 21.89 0.26 -46.94 16 21 Si 1.00 39.21 29.56 68.60 2.03 41.24 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 24 H -0.24 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.05 -2.13 9.43 22.53 0.21 -1.92 16 26 C -0.16 -5.22 9.97 22.34 0.22 -5.00 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.97 7.62 -2.39 -0.02 0.95 16 30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 0.94 7.82 -2.39 -0.02 0.92 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 0.99 7.82 -2.38 -0.02 0.97 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.59 6.94 -2.39 -0.02 1.58 16 36 H 0.15 4.01 5.45 -2.91 -0.02 3.99 16 37 H 0.11 4.94 7.65 -2.91 -0.02 4.91 16 38 H 0.28 15.03 8.29 -92.71 -0.77 14.26 16 39 H 0.14 5.29 6.19 -2.91 -0.02 5.28 16 40 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -74.50 325.99 4.43 -70.07 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 1.05 Total: 24.45 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 3.48 Total: -29.59 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.26 Total: -46.94 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -2.39 Total: -59.23 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -74.50 4.43 -70.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.457 kcal (2) G-P(sol) polarization free energy of solvation -74.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds