Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52293 * 2 1 4 4 C 1.53094 * 109.51927 * 239.81665 * 2 1 3 5 5 O 1.42909 * 109.41270 * 182.48783 * 4 2 1 6 6 C 1.42903 * 114.09877 * 61.15461 * 5 4 2 7 7 C 1.53095 * 109.41352 * 298.84397 * 6 5 4 8 8 C 1.53174 * 109.52063 * 120.13105 * 2 1 3 9 9 H 1.09000 * 109.54623 * 56.93265 * 8 2 1 10 10 O 1.42896 * 109.54244 * 296.74722 * 8 2 1 11 11 C 1.35664 * 116.99903 * 155.27050 * 10 8 2 12 12 C 1.39158 * 119.90655 * 185.45997 * 11 10 8 13 13 C 1.37599 * 120.09423 * 180.02562 * 12 11 10 14 14 C 1.39948 * 119.90227 * 359.97438 * 13 12 11 15 15 C 1.47575 * 120.09007 * 179.97438 * 14 13 12 16 16 O 1.21818 * 120.00244 * 359.97438 * 15 14 13 17 17 C 1.41765 * 119.99850 * 179.97438 * 15 14 13 18 18 H 1.08004 * 120.00016 * 0.02562 * 17 15 14 19 19 C 1.40346 * 120.00109 * 180.02562 * 17 15 14 20 20 N 1.30535 * 119.99509 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 119.99879 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47137 * 59.99999 * 21 19 17 23 23 H 1.48501 * 109.46953 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47429 * 299.99630 * 21 19 17 25 25 C 1.39948 * 119.81598 * 0.02562 * 14 13 12 26 26 C 1.37596 * 119.90589 * 359.97438 * 25 14 13 27 27 H 1.08997 * 109.47059 * 299.87289 * 1 2 3 28 28 H 1.09002 * 109.47530 * 59.87122 * 1 2 3 29 29 H 1.09004 * 109.47118 * 179.86703 * 1 2 3 30 30 H 1.09001 * 109.48135 * 302.46392 * 4 2 1 31 31 H 1.08997 * 109.48548 * 62.50396 * 4 2 1 32 32 H 1.08998 * 109.48028 * 58.82857 * 6 5 4 33 33 H 1.08996 * 109.47577 * 178.85900 * 6 5 4 34 34 H 1.08996 * 109.52209 * 297.70076 * 7 6 5 35 35 H 1.09000 * 109.51990 * 177.51829 * 7 6 5 36 36 H 1.08001 * 119.95615 * 0.02562 * 12 11 10 37 37 H 1.07993 * 120.04776 * 180.27347 * 13 12 11 38 38 H 0.97000 * 119.99524 * 180.02562 * 20 19 17 39 39 H 1.08003 * 120.04577 * 179.97438 * 25 14 13 40 40 H 1.07996 * 119.95121 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7255 -1.2473 5 8 3.4694 -0.7749 -1.2160 6 6 4.0043 -1.4817 -0.0950 7 6 3.5715 -0.7865 1.1985 8 6 2.0418 -0.7247 1.2486 9 1 1.6354 -1.7357 1.2758 10 8 1.6303 -0.0125 2.4171 11 6 1.5289 -0.7235 3.5680 12 6 1.0250 -0.1183 4.7153 13 6 0.9209 -0.8358 5.8848 14 6 1.3222 -2.1760 5.9192 15 6 1.2129 -2.9492 7.1715 16 8 0.7733 -2.4208 8.1772 17 6 1.6194 -4.3069 7.2040 18 1 2.0095 -4.7753 6.3124 19 6 1.5150 -5.0424 8.3947 20 7 1.0440 -4.4761 9.4724 21 14 2.0500 -6.8316 8.4373 22 1 3.4887 -6.9266 8.0819 23 1 1.8406 -7.3785 9.8019 24 1 1.2467 -7.6119 7.4622 25 6 1.8284 -2.7807 4.7631 26 6 1.9291 -2.0561 3.5978 27 1 -0.3633 0.5118 0.8911 28 1 -0.3634 0.5158 -0.8888 29 1 -0.3633 -1.0277 -0.0024 30 1 1.6431 -1.7399 -1.2669 31 1 1.7159 -0.1896 -2.1388 32 1 3.6316 -2.5059 -0.0996 33 1 5.0925 -1.4905 -0.1566 34 1 3.9780 0.2245 1.2222 35 1 3.9417 -1.3490 2.0557 36 1 0.7151 0.9159 4.6878 37 1 0.5256 -0.3667 6.7736 38 1 0.9721 -4.9843 10.2954 39 1 2.1395 -3.8147 4.7855 40 1 2.3192 -2.5221 2.7051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = -111.494055 kcal Electronic energy + Delta-G solvation = -22763.135503 eV Core-core repulsion = 19314.737614 eV Total energy + Delta-G solvation = -3448.397889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54192 -38.93779 -37.44277 -35.76205 -34.02804 -32.70772 -32.17999 -30.49534 -29.43236 -27.13158 -26.68580 -25.06617 -22.82464 -22.33458 -22.10034 -20.34631 -19.52360 -18.03729 -16.69059 -16.49306 -16.46492 -15.63445 -15.44447 -15.13287 -14.66991 -14.40800 -14.20168 -13.94190 -13.53406 -13.11514 -12.96643 -12.81282 -12.63547 -12.35957 -12.20554 -12.16981 -11.69978 -11.51313 -11.34145 -11.27930 -11.15962 -10.91449 -10.65698 -10.56619 -10.38660 -10.22812 -10.03791 -9.82556 -8.99361 -8.45080 -7.50665 -7.48729 -6.32850 -4.93451 1.82465 1.97585 3.04276 3.09990 3.11636 3.24070 3.57992 3.97848 4.00003 4.35274 4.43534 4.54825 4.63260 4.76038 4.88658 5.00315 5.10619 5.22785 5.29802 5.33382 5.36741 5.37226 5.53457 5.57167 5.73644 5.79082 5.82158 5.87777 5.95029 6.02136 6.10879 6.11632 6.29989 6.60796 6.81621 6.85484 7.02315 7.21807 7.33219 7.36072 7.81966 7.99749 8.76255 8.81654 10.28828 10.50849 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024066 B = 0.003512 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.196819 B = 7969.994376 C = 8705.351413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 H 0.089 0.911 4 C 0.069 3.931 5 O -0.382 6.382 6 C 0.064 3.936 7 C -0.184 4.184 8 C 0.091 3.909 9 H 0.075 0.925 10 O -0.309 6.309 11 C 0.113 3.887 12 C -0.163 4.163 13 C -0.056 4.056 14 C -0.136 4.136 15 C 0.389 3.611 16 O -0.543 6.543 17 C -0.518 4.518 18 H 0.073 0.927 19 C 0.080 3.920 20 N -0.735 5.735 21 Si 0.906 3.094 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.056 4.056 26 C -0.223 4.223 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.132 0.868 38 H 0.275 0.725 39 H 0.131 0.869 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 4.398 -19.125 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 H 0.107 0.893 4 C -0.008 4.008 5 O -0.301 6.301 6 C -0.013 4.013 7 C -0.222 4.222 8 C 0.034 3.966 9 H 0.092 0.908 10 O -0.223 6.223 11 C 0.068 3.932 12 C -0.182 4.182 13 C -0.074 4.074 14 C -0.138 4.138 15 C 0.285 3.715 16 O -0.433 6.433 17 C -0.549 4.549 18 H 0.091 0.909 19 C -0.144 4.144 20 N -0.364 5.364 21 Si 0.730 3.270 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.075 4.075 26 C -0.242 4.242 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.086 0.914 39 H 0.149 0.851 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.510 4.974 -18.647 19.461 hybrid contribution 0.250 -1.247 0.120 1.277 sum 2.761 3.727 -18.526 19.098 Atomic orbital electron populations 1.21732 0.93603 1.02312 1.02715 1.21885 0.97301 1.01500 0.93340 0.89286 1.22677 0.80961 0.99825 0.97366 1.87936 1.20229 1.76413 1.45490 1.22577 0.99538 0.94521 0.84639 1.22829 0.96296 1.03573 0.99482 1.22371 0.93803 0.96209 0.84203 0.90752 1.85993 1.83297 1.37634 1.15393 1.19108 0.97505 0.90671 0.85882 1.20295 1.06225 1.00482 0.91201 1.21230 0.95789 0.93838 0.96545 1.21820 0.98957 0.94719 0.98285 1.18060 0.80728 0.88002 0.84697 1.90502 1.45486 1.72294 1.35055 1.20897 1.39879 0.97431 0.96725 0.90911 1.26007 0.93226 1.00080 0.95075 1.69951 1.29084 1.36852 1.00480 0.86436 0.80095 0.82189 0.78266 1.18902 1.20226 1.18907 1.21352 0.95283 0.99731 0.91091 1.21144 1.09259 0.94123 0.99652 0.91259 0.92235 0.92544 0.92809 0.88160 0.92843 0.88259 0.89909 0.89637 0.86101 0.85043 0.91413 0.85119 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.08 37.16 0.34 -0.99 16 2 C -0.12 -1.18 2.64 -90.48 -0.24 -1.42 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.07 0.58 6.13 37.21 0.23 0.81 16 5 O -0.38 -3.95 10.77 -35.23 -0.38 -4.33 16 6 C 0.06 0.58 6.84 37.21 0.25 0.84 16 7 C -0.18 -1.98 5.42 -26.59 -0.14 -2.12 16 8 C 0.09 1.07 1.59 -26.55 -0.04 1.02 16 9 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 10 O -0.31 -4.61 9.27 -18.69 -0.17 -4.78 16 11 C 0.11 1.93 6.62 -38.89 -0.26 1.67 16 12 C -0.16 -2.97 9.97 -39.47 -0.39 -3.37 16 13 C -0.06 -1.19 9.59 -39.17 -0.38 -1.56 16 14 C -0.14 -3.20 5.89 -104.81 -0.62 -3.82 16 15 C 0.39 11.01 6.91 -34.43 -0.24 10.77 16 16 O -0.54 -17.29 14.89 5.08 0.08 -17.22 16 17 C -0.52 -14.13 8.86 -37.44 -0.33 -14.46 16 18 H 0.07 1.78 6.01 -52.48 -0.32 1.47 16 19 C 0.08 2.12 5.50 -17.31 -0.10 2.03 16 20 N -0.74 -21.09 11.73 55.57 0.65 -20.44 16 21 Si 0.91 19.05 29.56 -169.99 -5.03 14.02 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.06 -1.12 9.43 -39.18 -0.37 -1.49 16 26 C -0.22 -3.78 8.26 -39.47 -0.33 -4.10 16 27 H 0.07 0.74 7.78 -51.93 -0.40 0.33 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.96 6.90 -51.93 -0.36 0.61 16 36 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.13 2.84 7.65 -52.49 -0.40 2.44 16 38 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 39 H 0.13 2.49 6.19 -52.48 -0.33 2.17 16 40 H 0.12 1.65 5.38 -52.49 -0.28 1.37 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -32.53 327.97 -7.87 -40.40 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.35 Total: 3.59 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.61 Total: -16.20 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.65 Total: -20.44 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.48 Total: -26.32 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.53 -7.87 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.091 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds