Wall clock time and date at job start Tue Mar 31 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52293 * 2 1 4 4 C 1.53094 * 109.51927 * 239.81665 * 2 1 3 5 5 O 1.42909 * 109.41270 * 182.48783 * 4 2 1 6 6 C 1.42903 * 114.09877 * 61.15461 * 5 4 2 7 7 C 1.53095 * 109.41352 * 298.84397 * 6 5 4 8 8 C 1.53174 * 109.52063 * 120.13105 * 2 1 3 9 9 H 1.09000 * 109.54623 * 56.93265 * 8 2 1 10 10 O 1.42896 * 109.54244 * 296.74722 * 8 2 1 11 11 C 1.35664 * 116.99903 * 155.27050 * 10 8 2 12 12 C 1.39158 * 119.90655 * 185.45997 * 11 10 8 13 13 C 1.37599 * 120.09423 * 180.02562 * 12 11 10 14 14 C 1.39948 * 119.90227 * 359.97438 * 13 12 11 15 15 C 1.47575 * 120.09007 * 179.97438 * 14 13 12 16 16 O 1.21818 * 120.00244 * 359.97438 * 15 14 13 17 17 C 1.41765 * 119.99850 * 179.97438 * 15 14 13 18 18 H 1.08004 * 120.00016 * 0.02562 * 17 15 14 19 19 C 1.40346 * 120.00109 * 180.02562 * 17 15 14 20 20 N 1.30535 * 119.99509 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 119.99879 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47137 * 59.99999 * 21 19 17 23 23 H 1.48501 * 109.46953 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47429 * 299.99630 * 21 19 17 25 25 C 1.39948 * 119.81598 * 0.02562 * 14 13 12 26 26 C 1.37596 * 119.90589 * 359.97438 * 25 14 13 27 27 H 1.08997 * 109.47059 * 299.87289 * 1 2 3 28 28 H 1.09002 * 109.47530 * 59.87122 * 1 2 3 29 29 H 1.09004 * 109.47118 * 179.86703 * 1 2 3 30 30 H 1.09001 * 109.48135 * 302.46392 * 4 2 1 31 31 H 1.08997 * 109.48548 * 62.50396 * 4 2 1 32 32 H 1.08998 * 109.48028 * 58.82857 * 6 5 4 33 33 H 1.08996 * 109.47577 * 178.85900 * 6 5 4 34 34 H 1.08996 * 109.52209 * 297.70076 * 7 6 5 35 35 H 1.09000 * 109.51990 * 177.51829 * 7 6 5 36 36 H 1.08001 * 119.95615 * 0.02562 * 12 11 10 37 37 H 1.07993 * 120.04776 * 180.27347 * 13 12 11 38 38 H 0.97000 * 119.99524 * 180.02562 * 20 19 17 39 39 H 1.08003 * 120.04577 * 179.97438 * 25 14 13 40 40 H 1.07996 * 119.95121 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7255 -1.2473 5 8 3.4694 -0.7749 -1.2160 6 6 4.0043 -1.4817 -0.0950 7 6 3.5715 -0.7865 1.1985 8 6 2.0418 -0.7247 1.2486 9 1 1.6354 -1.7357 1.2758 10 8 1.6303 -0.0125 2.4171 11 6 1.5289 -0.7235 3.5680 12 6 1.0250 -0.1183 4.7153 13 6 0.9209 -0.8358 5.8848 14 6 1.3222 -2.1760 5.9192 15 6 1.2129 -2.9492 7.1715 16 8 0.7733 -2.4208 8.1772 17 6 1.6194 -4.3069 7.2040 18 1 2.0095 -4.7753 6.3124 19 6 1.5150 -5.0424 8.3947 20 7 1.0440 -4.4761 9.4724 21 14 2.0500 -6.8316 8.4373 22 1 3.4887 -6.9266 8.0819 23 1 1.8406 -7.3785 9.8019 24 1 1.2467 -7.6119 7.4622 25 6 1.8284 -2.7807 4.7631 26 6 1.9291 -2.0561 3.5978 27 1 -0.3633 0.5118 0.8911 28 1 -0.3634 0.5158 -0.8888 29 1 -0.3633 -1.0277 -0.0024 30 1 1.6431 -1.7399 -1.2669 31 1 1.7159 -0.1896 -2.1388 32 1 3.6316 -2.5059 -0.0996 33 1 5.0925 -1.4905 -0.1566 34 1 3.9780 0.2245 1.2222 35 1 3.9417 -1.3490 2.0557 36 1 0.7151 0.9159 4.6878 37 1 0.5256 -0.3667 6.7736 38 1 0.9721 -4.9843 10.2954 39 1 2.1395 -3.8147 4.7855 40 1 2.3192 -2.5221 2.7051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:55 Heat of formation + Delta-G solvation = -131.829361 kcal Electronic energy + Delta-G solvation = -22764.017308 eV Core-core repulsion = 19314.737614 eV Total energy + Delta-G solvation = -3449.279694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63515 -40.12227 -39.00360 -37.48549 -34.91520 -34.77056 -33.05700 -31.98109 -31.08414 -28.69408 -27.76523 -26.05169 -24.20477 -23.59907 -23.25881 -21.63643 -20.92971 -19.31565 -18.61295 -17.66858 -17.28209 -17.18411 -16.54491 -16.13184 -15.96506 -15.73566 -15.53158 -15.05813 -14.77791 -14.69591 -14.40409 -14.21360 -14.13743 -13.56102 -13.36421 -13.13758 -13.01774 -12.94965 -12.81593 -12.55140 -12.46731 -12.24209 -12.08987 -11.98584 -11.56187 -11.37328 -11.29719 -10.97877 -10.62951 -9.96869 -9.62728 -9.04844 -8.34827 -7.08354 0.20970 0.45020 1.38028 1.40522 1.53691 2.09619 2.20446 2.20830 2.83932 2.91275 3.53356 3.61744 3.73982 3.80070 3.85646 3.90420 3.98827 4.18027 4.21600 4.25636 4.40732 4.47941 4.51446 4.56180 4.61070 4.70214 4.76162 4.81036 4.90118 5.02152 5.04747 5.08449 5.17210 5.19719 5.28507 5.35990 5.43453 5.72805 5.79923 5.96180 6.18658 6.46813 6.68960 6.79750 8.24622 8.48704 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024066 B = 0.003512 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.196819 B = 7969.994376 C = 8705.351413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.068 3.932 5 O -0.397 6.397 6 C 0.065 3.935 7 C -0.181 4.181 8 C 0.079 3.921 9 H 0.082 0.918 10 O -0.310 6.310 11 C 0.132 3.868 12 C -0.164 4.164 13 C -0.066 4.066 14 C -0.180 4.180 15 C 0.364 3.636 16 O -0.601 6.601 17 C -0.544 4.544 18 H 0.097 0.903 19 C 0.021 3.979 20 N -0.789 5.789 21 Si 0.997 3.003 22 H -0.250 1.250 23 H -0.271 1.271 24 H -0.250 1.250 25 C -0.052 4.052 26 C -0.210 4.210 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.282 0.718 39 H 0.139 0.861 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 2.948 -22.618 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.100 0.900 4 C -0.008 4.008 5 O -0.316 6.316 6 C -0.012 4.012 7 C -0.219 4.219 8 C 0.024 3.976 9 H 0.100 0.900 10 O -0.224 6.224 11 C 0.087 3.913 12 C -0.182 4.182 13 C -0.085 4.085 14 C -0.181 4.181 15 C 0.264 3.736 16 O -0.496 6.496 17 C -0.574 4.574 18 H 0.115 0.885 19 C -0.197 4.197 20 N -0.418 5.418 21 Si 0.815 3.185 22 H -0.174 1.174 23 H -0.195 1.195 24 H -0.173 1.173 25 C -0.070 4.070 26 C -0.228 4.228 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.161 0.839 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.156 0.844 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.592 3.538 -22.185 22.750 hybrid contribution -0.083 -0.654 1.038 1.230 sum 3.509 2.883 -21.146 21.629 Atomic orbital electron populations 1.21724 0.93087 1.02628 1.02796 1.21890 0.97677 1.01055 0.92916 0.90036 1.22814 0.80173 1.00642 0.97175 1.87930 1.21199 1.76686 1.45759 1.22663 1.00439 0.94754 0.83319 1.22808 0.95284 1.03365 1.00460 1.22765 0.94756 0.96642 0.83482 0.90028 1.86026 1.82839 1.38066 1.15494 1.19146 0.95203 0.90651 0.86317 1.20402 1.05947 1.01299 0.90554 1.21115 0.96531 0.93560 0.97280 1.21465 1.03218 0.95605 0.97820 1.18811 0.79763 0.89212 0.85783 1.90440 1.48169 1.73527 1.37471 1.21439 1.40072 0.97671 0.98240 0.88506 1.27326 0.92368 1.06004 0.94049 1.70112 1.30401 1.39645 1.01628 0.85083 0.80224 0.74409 0.78817 1.17362 1.19531 1.17335 1.21382 0.94638 1.00212 0.90805 1.21392 1.07919 0.93795 0.99701 0.93174 0.90232 0.92103 0.91544 0.86323 0.91464 0.86979 0.90742 0.90039 0.83915 0.86987 0.90754 0.84371 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.08 71.98 0.65 -1.58 16 2 C -0.12 -1.93 2.64 -10.70 -0.03 -1.95 16 3 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 4 C 0.07 0.91 6.13 72.01 0.44 1.35 16 5 O -0.40 -6.86 10.77 -148.98 -1.60 -8.47 16 6 C 0.06 0.96 6.84 72.01 0.49 1.45 16 7 C -0.18 -3.36 5.42 30.69 0.17 -3.20 16 8 C 0.08 1.62 1.59 30.71 0.05 1.67 16 9 H 0.08 1.58 6.30 -2.39 -0.02 1.57 16 10 O -0.31 -8.49 9.27 -89.80 -0.83 -9.32 16 11 C 0.13 4.27 6.62 22.71 0.15 4.42 16 12 C -0.16 -5.89 9.97 22.34 0.22 -5.67 16 13 C -0.07 -2.95 9.59 22.53 0.22 -2.74 16 14 C -0.18 -8.76 5.89 -19.99 -0.12 -8.88 16 15 C 0.36 21.74 6.91 25.61 0.18 21.91 16 16 O -0.60 -41.06 14.89 -4.73 -0.07 -41.13 16 17 C -0.54 -30.42 8.86 23.66 0.21 -30.21 16 18 H 0.10 4.72 6.01 -2.91 -0.02 4.71 16 19 C 0.02 1.16 5.50 85.40 0.47 1.63 16 20 N -0.79 -47.18 11.73 21.89 0.26 -46.93 16 21 Si 1.00 38.86 29.56 68.60 2.03 40.89 16 22 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 25 C -0.05 -2.05 9.43 22.53 0.21 -1.83 16 26 C -0.21 -6.60 8.26 22.34 0.18 -6.41 16 27 H 0.05 0.97 7.78 -2.39 -0.02 0.95 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.58 6.90 -2.39 -0.02 1.57 16 36 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.11 5.28 7.65 -2.91 -0.02 5.26 16 38 H 0.28 15.07 8.29 -92.71 -0.77 14.30 16 39 H 0.14 5.10 6.19 -2.91 -0.02 5.08 16 40 H 0.16 3.71 5.38 -2.91 -0.02 3.69 16 Total: -1.00 -75.29 327.97 4.33 -70.96 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 1.05 Total: 24.02 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 3.50 Total: -30.03 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.26 Total: -46.93 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -2.51 Total: -58.92 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -75.29 4.33 -70.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.870 kcal (2) G-P(sol) polarization free energy of solvation -75.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds