Wall clock time and date at job start Tue Mar 31 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.52793 * 2 1 4 4 C 1.53099 * 109.52291 * 120.12084 * 2 1 3 5 5 O 1.42902 * 109.41617 * 177.51129 * 4 2 1 6 6 C 1.42900 * 114.10148 * 298.84561 * 5 4 2 7 7 C 1.53095 * 109.41779 * 61.15533 * 6 5 4 8 8 C 1.53177 * 109.52553 * 239.80501 * 2 1 3 9 9 H 1.09000 * 109.54382 * 302.98322 * 8 2 1 10 10 O 1.42897 * 109.54280 * 63.24666 * 8 2 1 11 11 C 1.35657 * 117.00290 * 204.08670 * 10 8 2 12 12 C 1.39166 * 119.90566 * 174.22832 * 11 10 8 13 13 C 1.37600 * 120.09331 * 179.76479 * 12 11 10 14 14 C 1.39952 * 119.90328 * 0.48996 * 13 12 11 15 15 C 1.47574 * 120.09185 * 179.78987 * 14 13 12 16 16 O 1.21819 * 119.99860 * 179.97438 * 15 14 13 17 17 C 1.41760 * 119.99797 * 359.97397 * 15 14 13 18 18 H 1.08001 * 120.00218 * 7.57195 * 17 15 14 19 19 C 1.40343 * 119.99611 * 187.56490 * 17 15 14 20 20 N 1.30528 * 120.00279 * 353.41886 * 19 17 15 21 21 Si 1.86803 * 119.99921 * 173.41659 * 19 17 15 22 22 H 1.48502 * 109.46695 * 94.98096 * 21 19 17 23 23 H 1.48496 * 109.47303 * 214.97912 * 21 19 17 24 24 H 1.48500 * 109.47106 * 334.98505 * 21 19 17 25 25 C 1.39943 * 119.81413 * 359.76350 * 14 13 12 26 26 C 1.37596 * 119.90518 * 0.02562 * 25 14 13 27 27 H 1.08999 * 109.46812 * 299.87798 * 1 2 3 28 28 H 1.08997 * 109.47262 * 179.87728 * 1 2 3 29 29 H 1.08994 * 109.47126 * 59.87745 * 1 2 3 30 30 H 1.08998 * 109.47676 * 297.49960 * 4 2 1 31 31 H 1.09004 * 109.47863 * 57.52063 * 4 2 1 32 32 H 1.09001 * 109.48281 * 181.14170 * 6 5 4 33 33 H 1.08998 * 109.47788 * 301.16468 * 6 5 4 34 34 H 1.09006 * 109.51963 * 62.29364 * 7 6 5 35 35 H 1.08998 * 109.52530 * 182.48748 * 7 6 5 36 36 H 1.08004 * 119.95326 * 0.02562 * 12 11 10 37 37 H 1.07996 * 120.04643 * 180.28022 * 13 12 11 38 38 H 0.97002 * 120.00253 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.05197 * 180.02562 * 25 14 13 40 40 H 1.08006 * 119.95582 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7241 1.2481 5 8 3.4694 -0.7736 1.2168 6 6 4.0044 -1.4816 0.0967 7 6 3.5717 -0.7880 -1.1977 8 6 2.0419 -0.7261 -1.2478 9 1 1.6368 -1.7377 -1.2730 10 8 1.6304 -0.0152 -2.4171 11 6 1.5420 -0.7247 -3.5700 12 6 1.0328 -0.1236 -4.7172 13 6 0.9459 -0.8382 -5.8899 14 6 1.3609 -2.1743 -5.9253 15 6 1.2652 -2.9459 -7.1796 16 8 1.6274 -4.1086 -7.2085 17 6 0.7519 -2.3339 -8.3507 18 1 0.5456 -1.2738 -8.3601 19 6 0.5119 -3.1057 -9.4981 20 7 0.8797 -4.3576 -9.5312 21 14 -0.3341 -2.3413 -10.9778 22 1 0.6900 -1.8666 -11.9428 23 1 -1.1986 -3.3557 -11.6325 24 1 -1.1659 -1.1938 -10.5343 25 6 1.8674 -2.7763 -4.7679 26 6 1.9549 -2.0533 -3.6006 27 1 -0.3633 0.5119 0.8911 28 1 -0.3633 -1.0276 -0.0022 29 1 -0.3633 0.5157 -0.8888 30 1 1.7159 -0.1872 2.1390 31 1 1.6430 -1.7384 1.2689 32 1 5.0926 -1.4904 0.1582 33 1 3.6317 -2.5059 0.1025 34 1 3.9780 0.2232 -1.2224 35 1 3.9417 -1.3514 -2.0542 36 1 0.7093 0.9064 -4.6881 37 1 0.5549 -0.3696 -6.7809 38 1 0.7135 -4.8912 -10.3241 39 1 2.1891 -3.8070 -4.7910 40 1 2.3453 -2.5173 -2.7068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:58 Heat of formation + Delta-G solvation = -111.651966 kcal Electronic energy + Delta-G solvation = -22716.827127 eV Core-core repulsion = 19268.422390 eV Total energy + Delta-G solvation = -3448.404737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54141 -38.93581 -37.44134 -35.76679 -34.02682 -32.71765 -32.15940 -30.48808 -29.47269 -27.07129 -26.66820 -25.13796 -22.82460 -22.33070 -22.08034 -20.22213 -19.64039 -18.03391 -16.88487 -16.49376 -16.20398 -15.61937 -15.46910 -15.16285 -14.70230 -14.34572 -14.23888 -13.94242 -13.43878 -13.28540 -12.94834 -12.80125 -12.52874 -12.34466 -12.21701 -12.17116 -11.76489 -11.54119 -11.36024 -11.23889 -11.14986 -10.94058 -10.64155 -10.51893 -10.37231 -10.23256 -10.02320 -9.83165 -8.98863 -8.45058 -7.50360 -7.48827 -6.33996 -4.92196 1.82281 1.97695 3.03087 3.11505 3.15373 3.24232 3.58258 3.97926 4.00924 4.35445 4.43669 4.55009 4.63225 4.76433 4.89059 5.00571 5.10961 5.23161 5.29939 5.33116 5.37364 5.38094 5.53916 5.57307 5.73874 5.77465 5.82158 5.88218 5.94899 6.01453 6.10154 6.11325 6.30881 6.61232 6.83016 6.85817 7.01696 7.22680 7.32554 7.36325 7.82158 8.01696 8.77000 8.81852 10.28453 10.50346 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035173 B = 0.003199 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.874093 B = 8751.660619 C = 9192.315725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 H 0.089 0.911 4 C 0.068 3.932 5 O -0.382 6.382 6 C 0.064 3.936 7 C -0.184 4.184 8 C 0.091 3.909 9 H 0.074 0.926 10 O -0.309 6.309 11 C 0.113 3.887 12 C -0.165 4.165 13 C -0.056 4.056 14 C -0.137 4.137 15 C 0.389 3.611 16 O -0.545 6.545 17 C -0.518 4.518 18 H 0.075 0.925 19 C 0.080 3.920 20 N -0.736 5.736 21 Si 0.906 3.094 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.056 4.056 26 C -0.221 4.221 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.274 0.726 39 H 0.126 0.874 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 8.043 17.085 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 H 0.107 0.893 4 C -0.008 4.008 5 O -0.301 6.301 6 C -0.013 4.013 7 C -0.222 4.222 8 C 0.034 3.966 9 H 0.092 0.908 10 O -0.223 6.223 11 C 0.068 3.932 12 C -0.184 4.184 13 C -0.074 4.074 14 C -0.138 4.138 15 C 0.285 3.715 16 O -0.435 6.435 17 C -0.549 4.549 18 H 0.093 0.907 19 C -0.144 4.144 20 N -0.364 5.364 21 Si 0.730 3.270 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.074 4.074 26 C -0.240 4.240 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.132 7.597 17.203 18.840 hybrid contribution -0.522 0.171 -0.939 1.087 sum 0.610 7.768 16.265 18.035 Atomic orbital electron populations 1.21729 0.93596 1.02321 1.02703 1.21881 0.97302 1.01486 0.93314 0.89274 1.22679 0.80968 0.99842 0.97360 1.87933 1.20226 1.76346 1.45559 1.22576 0.99546 0.94512 0.84644 1.22839 0.96316 1.03579 0.99490 1.22368 0.93807 0.96207 0.84204 0.90807 1.85991 1.83282 1.37817 1.15195 1.19114 0.97486 0.90675 0.85904 1.20352 1.06127 1.00626 0.91265 1.21402 0.95821 0.93676 0.96532 1.21818 0.98898 0.94979 0.98097 1.18074 0.80589 0.87375 0.85419 1.90497 1.48147 1.18480 1.86353 1.20926 1.40395 0.96563 0.97055 0.90733 1.26009 0.94149 0.94446 0.99757 1.69962 1.31743 1.07097 1.27618 0.86366 0.79808 0.79927 0.80929 1.19463 1.20093 1.18391 1.21184 0.95300 0.99723 0.91217 1.21100 1.09209 0.94207 0.99474 0.92231 0.92553 0.91250 0.88147 0.92818 0.88247 0.92850 0.89891 0.89643 0.86045 0.84609 0.91492 0.85560 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.08 37.16 0.34 -0.99 16 2 C -0.12 -1.19 2.64 -90.48 -0.24 -1.43 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.07 0.59 6.13 37.21 0.23 0.82 16 5 O -0.38 -4.00 10.77 -35.23 -0.38 -4.38 16 6 C 0.06 0.60 6.84 37.21 0.25 0.85 16 7 C -0.18 -2.02 5.41 -26.59 -0.14 -2.16 16 8 C 0.09 1.08 1.59 -26.55 -0.04 1.04 16 9 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 10 O -0.31 -4.60 9.28 -18.67 -0.17 -4.77 16 11 C 0.11 1.92 6.62 -38.89 -0.26 1.67 16 12 C -0.17 -2.92 9.97 -39.47 -0.39 -3.31 16 13 C -0.06 -1.13 9.43 -39.17 -0.37 -1.50 16 14 C -0.14 -3.21 5.89 -104.81 -0.62 -3.82 16 15 C 0.39 11.01 6.90 -34.43 -0.24 10.78 16 16 O -0.54 -17.32 14.92 5.08 0.08 -17.24 16 17 C -0.52 -14.16 8.82 -37.45 -0.33 -14.49 16 18 H 0.07 1.83 6.07 -52.49 -0.32 1.52 16 19 C 0.08 2.13 5.49 -17.31 -0.10 2.04 16 20 N -0.74 -21.10 11.76 55.57 0.65 -20.45 16 21 Si 0.91 19.10 29.57 -169.99 -5.03 14.07 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.06 -1.18 9.59 -39.18 -0.38 -1.55 16 26 C -0.22 -3.86 8.24 -39.47 -0.33 -4.19 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.99 6.82 -51.93 -0.35 0.64 16 36 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 37 H 0.14 2.61 6.22 -52.49 -0.33 2.29 16 38 H 0.27 7.02 8.29 -40.82 -0.34 6.69 16 39 H 0.13 2.72 7.65 -52.49 -0.40 2.32 16 40 H 0.12 1.73 5.35 -52.48 -0.28 1.44 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -32.57 327.98 -7.87 -40.44 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.35 Total: 3.65 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.61 Total: -16.25 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.65 Total: -20.45 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.48 Total: -26.40 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.57 -7.87 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.212 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds