Wall clock time and date at job start Tue Mar 31 2020 06:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.52793 * 2 1 4 4 C 1.53099 * 109.52291 * 120.12084 * 2 1 3 5 5 O 1.42902 * 109.41617 * 177.51129 * 4 2 1 6 6 C 1.42900 * 114.10148 * 298.84561 * 5 4 2 7 7 C 1.53095 * 109.41779 * 61.15533 * 6 5 4 8 8 C 1.53177 * 109.52553 * 239.80501 * 2 1 3 9 9 H 1.09000 * 109.54382 * 302.98322 * 8 2 1 10 10 O 1.42897 * 109.54280 * 63.24666 * 8 2 1 11 11 C 1.35657 * 117.00290 * 204.08670 * 10 8 2 12 12 C 1.39166 * 119.90566 * 174.22832 * 11 10 8 13 13 C 1.37600 * 120.09331 * 179.76479 * 12 11 10 14 14 C 1.39952 * 119.90328 * 0.48996 * 13 12 11 15 15 C 1.47574 * 120.09185 * 179.78987 * 14 13 12 16 16 O 1.21819 * 119.99860 * 179.97438 * 15 14 13 17 17 C 1.41760 * 119.99797 * 359.97397 * 15 14 13 18 18 H 1.08001 * 120.00218 * 7.57195 * 17 15 14 19 19 C 1.40343 * 119.99611 * 187.56490 * 17 15 14 20 20 N 1.30528 * 120.00279 * 353.41886 * 19 17 15 21 21 Si 1.86803 * 119.99921 * 173.41659 * 19 17 15 22 22 H 1.48502 * 109.46695 * 94.98096 * 21 19 17 23 23 H 1.48496 * 109.47303 * 214.97912 * 21 19 17 24 24 H 1.48500 * 109.47106 * 334.98505 * 21 19 17 25 25 C 1.39943 * 119.81413 * 359.76350 * 14 13 12 26 26 C 1.37596 * 119.90518 * 0.02562 * 25 14 13 27 27 H 1.08999 * 109.46812 * 299.87798 * 1 2 3 28 28 H 1.08997 * 109.47262 * 179.87728 * 1 2 3 29 29 H 1.08994 * 109.47126 * 59.87745 * 1 2 3 30 30 H 1.08998 * 109.47676 * 297.49960 * 4 2 1 31 31 H 1.09004 * 109.47863 * 57.52063 * 4 2 1 32 32 H 1.09001 * 109.48281 * 181.14170 * 6 5 4 33 33 H 1.08998 * 109.47788 * 301.16468 * 6 5 4 34 34 H 1.09006 * 109.51963 * 62.29364 * 7 6 5 35 35 H 1.08998 * 109.52530 * 182.48748 * 7 6 5 36 36 H 1.08004 * 119.95326 * 0.02562 * 12 11 10 37 37 H 1.07996 * 120.04643 * 180.28022 * 13 12 11 38 38 H 0.97002 * 120.00253 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.05197 * 180.02562 * 25 14 13 40 40 H 1.08006 * 119.95582 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7241 1.2481 5 8 3.4694 -0.7736 1.2168 6 6 4.0044 -1.4816 0.0967 7 6 3.5717 -0.7880 -1.1977 8 6 2.0419 -0.7261 -1.2478 9 1 1.6368 -1.7377 -1.2730 10 8 1.6304 -0.0152 -2.4171 11 6 1.5420 -0.7247 -3.5700 12 6 1.0328 -0.1236 -4.7172 13 6 0.9459 -0.8382 -5.8899 14 6 1.3609 -2.1743 -5.9253 15 6 1.2652 -2.9459 -7.1796 16 8 1.6274 -4.1086 -7.2085 17 6 0.7519 -2.3339 -8.3507 18 1 0.5456 -1.2738 -8.3601 19 6 0.5119 -3.1057 -9.4981 20 7 0.8797 -4.3576 -9.5312 21 14 -0.3341 -2.3413 -10.9778 22 1 0.6900 -1.8666 -11.9428 23 1 -1.1986 -3.3557 -11.6325 24 1 -1.1659 -1.1938 -10.5343 25 6 1.8674 -2.7763 -4.7679 26 6 1.9549 -2.0533 -3.6006 27 1 -0.3633 0.5119 0.8911 28 1 -0.3633 -1.0276 -0.0022 29 1 -0.3633 0.5157 -0.8888 30 1 1.7159 -0.1872 2.1390 31 1 1.6430 -1.7384 1.2689 32 1 5.0926 -1.4904 0.1582 33 1 3.6317 -2.5059 0.1025 34 1 3.9780 0.2232 -1.2224 35 1 3.9417 -1.3514 -2.0542 36 1 0.7093 0.9064 -4.6881 37 1 0.5549 -0.3696 -6.7809 38 1 0.7135 -4.8912 -10.3241 39 1 2.1891 -3.8070 -4.7910 40 1 2.3453 -2.5173 -2.7068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:57 Heat of formation + Delta-G solvation = -131.953955 kcal Electronic energy + Delta-G solvation = -22717.707487 eV Core-core repulsion = 19268.422390 eV Total energy + Delta-G solvation = -3449.285097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64706 -40.13318 -39.01119 -37.49388 -34.93408 -34.77229 -33.05143 -32.01195 -31.10375 -28.63304 -27.80403 -26.10769 -24.27894 -23.48562 -23.30225 -21.48933 -21.12686 -19.31733 -18.63672 -17.63964 -17.28465 -17.14471 -16.57586 -16.27885 -15.91488 -15.73147 -15.52295 -15.12035 -14.81023 -14.64953 -14.37923 -14.27867 -14.04148 -13.56993 -13.51185 -13.08231 -13.02996 -12.97893 -12.83519 -12.56416 -12.49906 -12.21937 -12.04612 -11.96924 -11.59605 -11.39978 -11.31486 -10.98872 -10.65547 -9.96526 -9.62857 -9.05228 -8.36469 -7.07504 0.20847 0.44822 1.37990 1.38657 1.56199 2.09069 2.19701 2.21440 2.83527 2.88364 3.51584 3.59190 3.72208 3.78100 3.83637 3.88651 3.96533 4.16191 4.19818 4.26541 4.39014 4.46466 4.51061 4.54617 4.59604 4.68593 4.75232 4.79995 4.88716 5.00234 5.02952 5.08982 5.16915 5.19406 5.27964 5.35685 5.43087 5.73415 5.79506 5.97832 6.15579 6.45239 6.69299 6.79169 8.23643 8.47860 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035173 B = 0.003199 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.874093 B = 8751.660619 C = 9192.315725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.067 3.933 5 O -0.396 6.396 6 C 0.065 3.935 7 C -0.181 4.181 8 C 0.080 3.920 9 H 0.076 0.924 10 O -0.307 6.307 11 C 0.131 3.869 12 C -0.161 4.161 13 C -0.053 4.053 14 C -0.180 4.180 15 C 0.365 3.635 16 O -0.601 6.601 17 C -0.545 4.545 18 H 0.097 0.903 19 C 0.022 3.978 20 N -0.789 5.789 21 Si 0.996 3.004 22 H -0.259 1.259 23 H -0.269 1.269 24 H -0.243 1.243 25 C -0.066 4.066 26 C -0.211 4.211 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.282 0.718 39 H 0.108 0.892 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 10.412 18.513 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.009 4.009 5 O -0.314 6.314 6 C -0.012 4.012 7 C -0.219 4.219 8 C 0.024 3.976 9 H 0.094 0.906 10 O -0.221 6.221 11 C 0.086 3.914 12 C -0.179 4.179 13 C -0.071 4.071 14 C -0.181 4.181 15 C 0.265 3.735 16 O -0.496 6.496 17 C -0.575 4.575 18 H 0.115 0.885 19 C -0.197 4.197 20 N -0.418 5.418 21 Si 0.814 3.186 22 H -0.183 1.183 23 H -0.193 1.193 24 H -0.166 1.166 25 C -0.085 4.085 26 C -0.229 4.229 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.315 9.994 18.666 21.175 hybrid contribution -0.219 -0.508 -1.181 1.304 sum 0.096 9.486 17.485 19.892 Atomic orbital electron populations 1.21722 0.92962 1.02527 1.02989 1.21882 0.97768 1.01098 0.92646 0.89706 1.22833 0.80138 1.00594 0.97358 1.87926 1.21247 1.76544 1.45728 1.22645 1.00451 0.94615 0.83468 1.22809 0.95444 1.03439 1.00247 1.22736 0.94658 0.96506 0.83736 0.90590 1.86023 1.82813 1.38024 1.15208 1.19194 0.95282 0.90260 0.86698 1.20593 1.05237 1.01753 0.90341 1.21394 0.95441 0.92340 0.97912 1.21461 1.03099 0.96492 0.97035 1.18803 0.79660 0.87168 0.87841 1.90434 1.50736 1.20732 1.87733 1.21456 1.40543 0.97885 0.97603 0.88540 1.27314 0.94246 0.94685 1.03428 1.70109 1.33156 1.09257 1.29240 0.85028 0.78616 0.79201 0.75738 1.18321 1.19341 1.16630 1.21111 0.95950 0.99343 0.92100 1.21238 1.08324 0.94321 0.99005 0.90102 0.92377 0.92872 0.86106 0.91825 0.86946 0.91863 0.90378 0.90455 0.82934 0.84046 0.90741 0.87371 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.08 71.98 0.65 -1.57 16 2 C -0.12 -1.94 2.64 -10.70 -0.03 -1.97 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.07 0.94 6.13 72.02 0.44 1.38 16 5 O -0.40 -7.18 10.77 -148.98 -1.60 -8.79 16 6 C 0.06 1.05 6.84 72.01 0.49 1.54 16 7 C -0.18 -3.59 5.41 30.69 0.17 -3.42 16 8 C 0.08 1.70 1.59 30.71 0.05 1.75 16 9 H 0.08 1.62 6.35 -2.39 -0.02 1.60 16 10 O -0.31 -8.36 9.28 -89.73 -0.83 -9.19 16 11 C 0.13 4.23 6.62 22.71 0.15 4.38 16 12 C -0.16 -5.37 9.97 22.34 0.22 -5.14 16 13 C -0.05 -2.12 9.43 22.53 0.21 -1.90 16 14 C -0.18 -8.75 5.89 -19.99 -0.12 -8.87 16 15 C 0.36 21.79 6.90 25.61 0.18 21.97 16 16 O -0.60 -40.94 14.92 -4.73 -0.07 -41.01 16 17 C -0.54 -30.62 8.82 23.65 0.21 -30.41 16 18 H 0.10 4.78 6.07 -2.91 -0.02 4.76 16 19 C 0.02 1.20 5.49 85.40 0.47 1.67 16 20 N -0.79 -47.13 11.76 21.89 0.26 -46.87 16 21 Si 1.00 39.20 29.57 68.60 2.03 41.22 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 24 H -0.24 -8.84 7.11 99.48 0.71 -8.13 16 25 C -0.07 -2.90 9.59 22.53 0.22 -2.68 16 26 C -0.21 -7.16 8.24 22.34 0.18 -6.98 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.00 7.79 -2.39 -0.02 0.98 16 30 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.08 1.66 6.82 -2.39 -0.02 1.64 16 36 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.14 5.37 6.22 -2.91 -0.02 5.35 16 38 H 0.28 15.01 8.29 -92.71 -0.77 14.24 16 39 H 0.11 5.00 7.65 -2.91 -0.02 4.98 16 40 H 0.15 4.05 5.35 -2.91 -0.02 4.03 16 Total: -1.00 -74.88 327.98 4.33 -70.55 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 1.05 Total: 24.34 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.50 Total: -30.26 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.26 Total: -46.87 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -2.51 Total: -58.98 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.22 kcal Total: -74.88 4.33 -70.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.403 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds