Wall clock time and date at job start Tue Mar 31 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.57192 * 2 1 4 4 C 1.53093 * 109.51821 * 120.15459 * 2 1 3 5 5 O 1.42904 * 109.41463 * 177.51514 * 4 2 1 6 6 C 1.42907 * 114.09680 * 298.84135 * 5 4 2 7 7 C 1.53098 * 109.41422 * 61.15524 * 6 5 4 8 8 C 1.53174 * 109.16496 * 302.39428 * 7 6 5 9 9 H 1.09003 * 109.54198 * 176.84295 * 8 7 6 10 10 O 1.42901 * 109.54094 * 297.10868 * 8 7 6 11 11 C 1.35648 * 117.00238 * 275.21685 * 10 8 7 12 12 C 1.39164 * 119.90869 * 185.10204 * 11 10 8 13 13 C 1.37594 * 120.09640 * 179.76339 * 12 11 10 14 14 C 1.39950 * 119.90444 * 0.51670 * 13 12 11 15 15 C 1.47573 * 120.09517 * 179.71937 * 14 13 12 16 16 O 1.21817 * 119.99807 * 180.02562 * 15 14 13 17 17 C 1.41761 * 119.99636 * 0.02562 * 15 14 13 18 18 H 1.07992 * 120.00616 * 0.02562 * 17 15 14 19 19 C 1.40345 * 119.99683 * 179.97438 * 17 15 14 20 20 N 1.30534 * 119.99988 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00002 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46910 * 90.00408 * 21 19 17 23 23 H 1.48497 * 109.46817 * 210.00784 * 21 19 17 24 24 H 1.48500 * 109.47021 * 330.00487 * 21 19 17 25 25 C 1.39954 * 119.81297 * 359.73799 * 14 13 12 26 26 C 1.37596 * 119.90091 * 0.02562 * 25 14 13 27 27 H 1.08996 * 109.47411 * 180.15999 * 1 2 3 28 28 H 1.09001 * 109.47409 * 300.16186 * 1 2 3 29 29 H 1.09006 * 109.46843 * 60.16085 * 1 2 3 30 30 H 1.08999 * 109.48069 * 297.49604 * 4 2 1 31 31 H 1.09007 * 109.48384 * 57.52051 * 4 2 1 32 32 H 1.08996 * 109.48361 * 301.18027 * 6 5 4 33 33 H 1.08997 * 109.48282 * 181.14155 * 6 5 4 34 34 H 1.09007 * 109.51952 * 62.29414 * 7 6 5 35 35 H 1.08996 * 109.52171 * 182.41788 * 7 6 5 36 36 H 1.08001 * 119.94969 * 0.02562 * 12 11 10 37 37 H 1.08003 * 120.05301 * 180.25068 * 13 12 11 38 38 H 0.97001 * 119.99711 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.04578 * 180.02562 * 25 14 13 40 40 H 1.08005 * 119.94524 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7248 1.2477 5 8 3.4694 -0.7743 1.2165 6 6 4.0043 -1.4817 0.0959 7 6 3.5716 -0.7873 -1.1981 8 6 2.0419 -0.7254 -1.2482 9 1 1.7280 -0.1825 -2.1398 10 8 1.5107 -2.0515 -1.2821 11 6 1.4238 -2.6493 -2.4967 12 6 0.8185 -3.8969 -2.6143 13 6 0.7239 -4.5046 -3.8452 14 6 1.2471 -3.8711 -4.9781 15 6 1.1534 -4.5218 -6.2993 16 8 1.6098 -3.9691 -7.2842 17 6 0.5323 -5.7902 -6.4222 18 1 0.1273 -6.2801 -5.5491 19 6 0.4427 -6.4088 -7.6788 20 7 0.9318 -5.8165 -8.7342 21 14 -0.3751 -8.0805 -7.8407 22 1 -1.8253 -7.8987 -8.1033 23 1 0.2423 -8.8266 -8.9665 24 1 -0.1923 -8.8451 -6.5808 25 6 1.8597 -2.6189 -4.8546 26 6 1.9457 -2.0161 -3.6206 27 1 -0.3634 -1.0276 0.0029 28 1 -0.3634 0.5163 0.8885 29 1 -0.3633 0.5114 -0.8915 30 1 1.7158 -0.1884 2.1389 31 1 1.6429 -1.7392 1.2679 32 1 3.6315 -2.5059 0.1009 33 1 5.0925 -1.4905 0.1574 34 1 3.9780 0.2239 -1.2223 35 1 3.9427 -1.3496 -2.0549 36 1 0.4187 -4.3869 -1.7389 37 1 0.2504 -5.4710 -3.9363 38 1 0.8702 -6.2443 -9.6026 39 1 2.2644 -2.1264 -5.7264 40 1 2.4180 -1.0496 -3.5245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:00 Heat of formation + Delta-G solvation = -110.608201 kcal Electronic energy + Delta-G solvation = -22903.123780 eV Core-core repulsion = 19454.764304 eV Total energy + Delta-G solvation = -3448.359476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62085 -38.77974 -37.30563 -35.72831 -33.99963 -32.71232 -32.07386 -30.49361 -29.43509 -27.00298 -26.64107 -25.24798 -22.98150 -22.40546 -22.01310 -20.07155 -19.49537 -17.75056 -16.73060 -16.38201 -16.26275 -15.76318 -15.57126 -15.19809 -14.56144 -14.36626 -14.17759 -13.74828 -13.54253 -13.16667 -13.00090 -12.70866 -12.53061 -12.25530 -12.20609 -11.92235 -11.88610 -11.69487 -11.33021 -11.22036 -11.19466 -10.89003 -10.59850 -10.52479 -10.37303 -10.25275 -9.97047 -9.58120 -8.99738 -8.45247 -7.50737 -7.49112 -6.32904 -4.93183 1.82119 1.97418 3.03411 3.11253 3.14535 3.30378 3.71350 3.98556 4.00040 4.38788 4.48128 4.60060 4.63365 4.74354 5.02938 5.10391 5.22106 5.30654 5.37474 5.38698 5.45365 5.53273 5.59768 5.63506 5.78907 5.79128 5.80656 5.85927 5.91339 6.03267 6.07789 6.11380 6.32375 6.60804 6.82948 7.01397 7.01753 7.22199 7.31871 7.35880 7.81297 8.00940 8.76687 8.81787 10.28717 10.50767 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.003281 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.644971 B = 8533.145157 C = 8726.214845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.067 3.933 5 O -0.385 6.385 6 C 0.065 3.935 7 C -0.183 4.183 8 C 0.088 3.912 9 H 0.078 0.922 10 O -0.309 6.309 11 C 0.113 3.887 12 C -0.165 4.165 13 C -0.057 4.057 14 C -0.136 4.136 15 C 0.388 3.612 16 O -0.544 6.544 17 C -0.517 4.517 18 H 0.074 0.926 19 C 0.079 3.921 20 N -0.735 5.735 21 Si 0.906 3.094 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.056 4.056 26 C -0.221 4.221 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.274 0.726 39 H 0.126 0.874 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 8.334 16.783 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 H 0.110 0.890 4 C -0.010 4.010 5 O -0.304 6.304 6 C -0.011 4.011 7 C -0.221 4.221 8 C 0.031 3.969 9 H 0.096 0.904 10 O -0.223 6.223 11 C 0.068 3.932 12 C -0.184 4.184 13 C -0.075 4.075 14 C -0.138 4.138 15 C 0.285 3.715 16 O -0.435 6.435 17 C -0.548 4.548 18 H 0.092 0.908 19 C -0.144 4.144 20 N -0.364 5.364 21 Si 0.730 3.270 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.074 4.074 26 C -0.239 4.239 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.153 0.847 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.219 8.652 16.474 18.648 hybrid contribution -0.493 -0.749 -0.444 1.001 sum 0.726 7.904 16.030 17.887 Atomic orbital electron populations 1.21712 0.93600 1.03113 1.01898 1.21877 0.97390 0.99721 0.94744 0.89010 1.22608 0.80955 1.00410 0.96994 1.87896 1.20363 1.76464 1.45668 1.22482 0.98733 0.95255 0.84659 1.22771 0.96114 1.02987 1.00197 1.22379 0.92760 0.82788 0.98992 0.90432 1.85961 1.79488 1.28948 1.27913 1.19095 0.97243 0.93274 0.83560 1.20332 1.05259 0.94355 0.98424 1.21397 0.96163 0.99350 0.90585 1.21821 0.98254 0.95019 0.98665 1.18074 0.81686 0.87144 0.84636 1.90499 1.48034 1.66286 1.38641 1.20938 1.35480 1.04087 0.94337 0.90764 1.26016 0.93952 0.98962 0.95481 1.69962 1.30820 1.36105 0.99503 0.86375 0.79858 0.81743 0.79007 1.19371 1.20149 1.18463 1.21190 0.95575 0.94506 0.96159 1.21108 1.07990 1.01632 0.93204 0.91404 0.92345 0.92304 0.88994 0.92178 0.92311 0.88898 0.89914 0.89665 0.86115 0.84655 0.91487 0.85579 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.03 37.16 0.34 -0.99 16 2 C -0.12 -1.14 2.76 -90.48 -0.25 -1.39 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.07 0.67 5.98 37.21 0.22 0.89 16 5 O -0.39 -4.47 10.77 -35.23 -0.38 -4.85 16 6 C 0.07 0.71 6.69 37.21 0.25 0.96 16 7 C -0.18 -1.97 5.43 -26.59 -0.14 -2.11 16 8 C 0.09 1.01 1.91 -26.55 -0.05 0.96 16 9 H 0.08 0.91 6.33 -51.93 -0.33 0.58 16 10 O -0.31 -4.36 7.96 -18.64 -0.15 -4.51 16 11 C 0.11 1.87 6.61 -38.89 -0.26 1.61 16 12 C -0.17 -2.86 9.97 -39.47 -0.39 -3.25 16 13 C -0.06 -1.13 9.43 -39.18 -0.37 -1.50 16 14 C -0.14 -3.18 5.89 -104.81 -0.62 -3.80 16 15 C 0.39 10.97 6.91 -34.43 -0.24 10.73 16 16 O -0.54 -17.30 14.89 5.08 0.08 -17.23 16 17 C -0.52 -14.10 8.86 -37.44 -0.33 -14.43 16 18 H 0.07 1.82 6.01 -52.49 -0.32 1.50 16 19 C 0.08 2.12 5.50 -17.31 -0.10 2.02 16 20 N -0.74 -21.08 11.73 55.57 0.65 -20.43 16 21 Si 0.91 19.08 29.56 -169.99 -5.03 14.05 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.06 -1.17 9.59 -39.17 -0.38 -1.55 16 26 C -0.22 -3.80 8.20 -39.47 -0.32 -4.12 16 27 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 32 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.99 6.94 -51.93 -0.36 0.63 16 36 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.14 2.58 6.19 -52.48 -0.33 2.26 16 38 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 39 H 0.13 2.72 7.65 -52.49 -0.40 2.31 16 40 H 0.12 1.72 5.45 -52.48 -0.29 1.44 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -32.23 326.00 -7.87 -40.10 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.32 Total: 3.91 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.64 Total: -15.97 kcal Atomic # 7 Polarization: -21.08 SS G_CDS: 0.65 Total: -20.43 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.45 Total: -26.58 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.23 -7.87 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.504 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds