Wall clock time and date at job start Tue Mar 31 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.57192 * 2 1 4 4 C 1.53093 * 109.51821 * 120.15459 * 2 1 3 5 5 O 1.42904 * 109.41463 * 177.51514 * 4 2 1 6 6 C 1.42907 * 114.09680 * 298.84135 * 5 4 2 7 7 C 1.53098 * 109.41422 * 61.15524 * 6 5 4 8 8 C 1.53174 * 109.16496 * 302.39428 * 7 6 5 9 9 H 1.09003 * 109.54198 * 176.84295 * 8 7 6 10 10 O 1.42901 * 109.54094 * 297.10868 * 8 7 6 11 11 C 1.35648 * 117.00238 * 275.21685 * 10 8 7 12 12 C 1.39164 * 119.90869 * 185.10204 * 11 10 8 13 13 C 1.37594 * 120.09640 * 179.76339 * 12 11 10 14 14 C 1.39950 * 119.90444 * 0.51670 * 13 12 11 15 15 C 1.47573 * 120.09517 * 179.71937 * 14 13 12 16 16 O 1.21817 * 119.99807 * 180.02562 * 15 14 13 17 17 C 1.41761 * 119.99636 * 0.02562 * 15 14 13 18 18 H 1.07992 * 120.00616 * 0.02562 * 17 15 14 19 19 C 1.40345 * 119.99683 * 179.97438 * 17 15 14 20 20 N 1.30534 * 119.99988 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00002 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46910 * 90.00408 * 21 19 17 23 23 H 1.48497 * 109.46817 * 210.00784 * 21 19 17 24 24 H 1.48500 * 109.47021 * 330.00487 * 21 19 17 25 25 C 1.39954 * 119.81297 * 359.73799 * 14 13 12 26 26 C 1.37596 * 119.90091 * 0.02562 * 25 14 13 27 27 H 1.08996 * 109.47411 * 180.15999 * 1 2 3 28 28 H 1.09001 * 109.47409 * 300.16186 * 1 2 3 29 29 H 1.09006 * 109.46843 * 60.16085 * 1 2 3 30 30 H 1.08999 * 109.48069 * 297.49604 * 4 2 1 31 31 H 1.09007 * 109.48384 * 57.52051 * 4 2 1 32 32 H 1.08996 * 109.48361 * 301.18027 * 6 5 4 33 33 H 1.08997 * 109.48282 * 181.14155 * 6 5 4 34 34 H 1.09007 * 109.51952 * 62.29414 * 7 6 5 35 35 H 1.08996 * 109.52171 * 182.41788 * 7 6 5 36 36 H 1.08001 * 119.94969 * 0.02562 * 12 11 10 37 37 H 1.08003 * 120.05301 * 180.25068 * 13 12 11 38 38 H 0.97001 * 119.99711 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.04578 * 180.02562 * 25 14 13 40 40 H 1.08005 * 119.94524 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7248 1.2477 5 8 3.4694 -0.7743 1.2165 6 6 4.0043 -1.4817 0.0959 7 6 3.5716 -0.7873 -1.1981 8 6 2.0419 -0.7254 -1.2482 9 1 1.7280 -0.1825 -2.1398 10 8 1.5107 -2.0515 -1.2821 11 6 1.4238 -2.6493 -2.4967 12 6 0.8185 -3.8969 -2.6143 13 6 0.7239 -4.5046 -3.8452 14 6 1.2471 -3.8711 -4.9781 15 6 1.1534 -4.5218 -6.2993 16 8 1.6098 -3.9691 -7.2842 17 6 0.5323 -5.7902 -6.4222 18 1 0.1273 -6.2801 -5.5491 19 6 0.4427 -6.4088 -7.6788 20 7 0.9318 -5.8165 -8.7342 21 14 -0.3751 -8.0805 -7.8407 22 1 -1.8253 -7.8987 -8.1033 23 1 0.2423 -8.8266 -8.9665 24 1 -0.1923 -8.8451 -6.5808 25 6 1.8597 -2.6189 -4.8546 26 6 1.9457 -2.0161 -3.6206 27 1 -0.3634 -1.0276 0.0029 28 1 -0.3634 0.5163 0.8885 29 1 -0.3633 0.5114 -0.8915 30 1 1.7158 -0.1884 2.1389 31 1 1.6429 -1.7392 1.2679 32 1 3.6315 -2.5059 0.1009 33 1 5.0925 -1.4905 0.1574 34 1 3.9780 0.2239 -1.2223 35 1 3.9427 -1.3496 -2.0549 36 1 0.4187 -4.3869 -1.7389 37 1 0.2504 -5.4710 -3.9363 38 1 0.8702 -6.2443 -9.6026 39 1 2.2644 -2.1264 -5.7264 40 1 2.4180 -1.0496 -3.5245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:00 Heat of formation + Delta-G solvation = -130.535702 kcal Electronic energy + Delta-G solvation = -22903.987901 eV Core-core repulsion = 19454.764304 eV Total energy + Delta-G solvation = -3449.223597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71903 -40.07732 -38.85671 -37.40472 -34.92260 -34.76254 -32.99203 -32.00125 -31.05741 -28.61188 -27.77817 -26.16866 -24.48771 -23.55817 -23.22733 -21.58913 -20.84698 -19.01272 -18.51138 -17.50127 -17.33549 -17.09599 -16.87931 -16.29354 -16.03821 -15.54714 -15.49447 -15.07151 -14.74529 -14.64397 -14.43799 -14.22472 -13.88067 -13.50549 -13.41466 -13.20401 -13.00276 -12.90430 -12.81255 -12.67811 -12.40028 -12.29253 -12.05242 -12.00005 -11.60688 -11.34458 -11.32005 -10.99366 -10.43972 -9.94720 -9.62754 -9.03296 -8.35077 -7.08175 0.22531 0.46257 1.38291 1.38752 1.55587 2.14603 2.20614 2.21652 2.84886 2.92659 3.54433 3.63526 3.74236 3.77959 3.87809 3.91466 3.96381 4.25169 4.26790 4.28924 4.46449 4.49373 4.52727 4.62015 4.69053 4.73043 4.74446 4.81293 4.91345 5.00971 5.05320 5.10832 5.13884 5.19510 5.30611 5.39178 5.45098 5.74722 5.80539 5.97848 6.20806 6.46522 6.69333 6.79735 8.24424 8.48516 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.003281 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.644971 B = 8533.145157 C = 8726.214845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 H 0.109 0.891 4 C 0.064 3.936 5 O -0.396 6.396 6 C 0.064 3.936 7 C -0.181 4.181 8 C 0.076 3.924 9 H 0.080 0.920 10 O -0.303 6.303 11 C 0.134 3.866 12 C -0.160 4.160 13 C -0.054 4.054 14 C -0.180 4.180 15 C 0.364 3.636 16 O -0.602 6.602 17 C -0.544 4.544 18 H 0.097 0.903 19 C 0.021 3.979 20 N -0.789 5.789 21 Si 0.996 3.004 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.244 1.244 25 C -0.067 4.067 26 C -0.210 4.210 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.282 0.718 39 H 0.106 0.894 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 8.269 19.728 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 H 0.127 0.873 4 C -0.013 4.013 5 O -0.315 6.315 6 C -0.012 4.012 7 C -0.218 4.218 8 C 0.020 3.980 9 H 0.098 0.902 10 O -0.217 6.217 11 C 0.088 3.912 12 C -0.179 4.179 13 C -0.072 4.072 14 C -0.181 4.181 15 C 0.264 3.736 16 O -0.497 6.497 17 C -0.574 4.574 18 H 0.115 0.885 19 C -0.197 4.197 20 N -0.418 5.418 21 Si 0.814 3.186 22 H -0.182 1.182 23 H -0.194 1.194 24 H -0.167 1.167 25 C -0.086 4.086 26 C -0.229 4.229 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.420 8.601 19.462 21.282 hybrid contribution -0.203 -0.577 -1.188 1.336 sum 0.217 8.024 18.274 19.959 Atomic orbital electron populations 1.21704 0.93107 1.02465 1.02894 1.21900 0.97726 1.00135 0.93340 0.87282 1.22741 0.80194 1.00257 0.98075 1.87893 1.21269 1.76422 1.45867 1.22519 0.99631 0.94465 0.84627 1.22765 0.95365 1.03951 0.99746 1.22740 0.93483 0.81408 1.00393 0.90182 1.86003 1.79112 1.30390 1.26152 1.19152 0.95006 0.92840 0.84162 1.20565 1.04549 0.94511 0.98235 1.21385 0.95745 0.99504 0.90535 1.21450 1.02389 0.96750 0.97557 1.18815 0.80840 0.87862 0.86064 1.90435 1.50508 1.67719 1.41002 1.21473 1.35715 1.04386 0.95837 0.88530 1.27319 0.93981 1.03876 0.94555 1.70115 1.32358 1.38738 1.00551 0.85037 0.78636 0.75177 0.79704 1.18225 1.19391 1.16700 1.21109 0.96100 0.94189 0.97185 1.21243 1.07394 1.02462 0.91781 0.92827 0.90297 0.92469 0.86862 0.93199 0.93659 0.87494 0.88080 0.90620 0.82974 0.84158 0.90773 0.87549 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 71.98 0.65 -1.52 16 2 C -0.11 -1.79 2.76 -10.70 -0.03 -1.82 16 3 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.06 1.07 5.98 72.01 0.43 1.50 16 5 O -0.40 -8.08 10.77 -148.98 -1.60 -9.69 16 6 C 0.06 1.25 6.69 72.01 0.48 1.73 16 7 C -0.18 -3.40 5.43 30.69 0.17 -3.24 16 8 C 0.08 1.53 1.91 30.71 0.06 1.59 16 9 H 0.08 1.63 6.33 -2.39 -0.02 1.61 16 10 O -0.30 -7.73 7.96 -89.63 -0.71 -8.44 16 11 C 0.13 4.18 6.61 22.71 0.15 4.33 16 12 C -0.16 -5.22 9.97 22.34 0.22 -5.00 16 13 C -0.05 -2.13 9.43 22.53 0.21 -1.92 16 14 C -0.18 -8.75 5.89 -19.98 -0.12 -8.87 16 15 C 0.36 21.73 6.91 25.61 0.18 21.91 16 16 O -0.60 -41.01 14.89 -4.72 -0.07 -41.09 16 17 C -0.54 -30.57 8.86 23.65 0.21 -30.36 16 18 H 0.10 4.77 6.01 -2.91 -0.02 4.76 16 19 C 0.02 1.17 5.50 85.40 0.47 1.64 16 20 N -0.79 -47.20 11.73 21.89 0.26 -46.94 16 21 Si 1.00 39.21 29.56 68.60 2.03 41.24 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 24 H -0.24 -8.86 7.11 99.48 0.71 -8.15 16 25 C -0.07 -2.92 9.59 22.53 0.22 -2.71 16 26 C -0.21 -7.05 8.20 22.34 0.18 -6.87 16 27 H 0.05 0.96 7.62 -2.39 -0.02 0.95 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 0.94 7.82 -2.38 -0.02 0.92 16 32 H 0.05 0.99 7.82 -2.39 -0.02 0.97 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.08 1.59 6.94 -2.39 -0.02 1.58 16 36 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.14 5.29 6.19 -2.91 -0.02 5.28 16 38 H 0.28 15.03 8.29 -92.71 -0.77 14.26 16 39 H 0.11 4.94 7.65 -2.91 -0.02 4.91 16 40 H 0.15 4.01 5.45 -2.91 -0.02 3.99 16 Total: -1.00 -74.50 326.00 4.43 -70.07 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 1.05 Total: 24.45 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 3.48 Total: -29.60 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.26 Total: -46.94 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -2.39 Total: -59.22 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -74.50 4.43 -70.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.464 kcal (2) G-P(sol) polarization free energy of solvation -74.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds