Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.55002 * 2 1 4 4 C 1.55227 * 110.77658 * 122.85943 * 2 1 3 5 5 C 1.54813 * 101.98357 * 155.50393 * 4 2 1 6 6 C 1.54098 * 104.30472 * 339.26359 * 5 4 2 7 7 H 1.08999 * 109.88182 * 117.33024 * 6 5 4 8 8 C 1.53003 * 109.87631 * 238.32963 * 6 5 4 9 9 O 1.42904 * 109.46956 * 185.00330 * 8 6 5 10 10 C 1.35641 * 116.99826 * 180.02562 * 9 8 6 11 11 C 1.38666 * 120.15847 * 359.72088 * 10 9 8 12 12 C 1.38092 * 120.08659 * 179.72109 * 11 10 9 13 13 C 1.38688 * 120.41858 * 0.56272 * 12 11 10 14 14 C 1.37705 * 120.31887 * 359.71397 * 13 12 11 15 15 C 1.39838 * 119.90185 * 0.02562 * 14 13 12 16 16 C 1.47537 * 120.20543 * 179.97438 * 15 14 13 17 17 O 1.21812 * 119.99879 * 180.02562 * 16 15 14 18 18 C 1.41826 * 119.99997 * 0.02562 * 16 15 14 19 19 H 1.08002 * 119.99951 * 0.02562 * 18 16 15 20 20 C 1.40318 * 120.00165 * 180.02562 * 18 16 15 21 21 N 1.30544 * 120.00039 * 359.97438 * 20 18 16 22 22 Si 1.86809 * 120.00292 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47030 * 89.99886 * 22 20 18 24 24 H 1.48494 * 109.47019 * 210.00060 * 22 20 18 25 25 H 1.48502 * 109.46866 * 330.00022 * 22 20 18 26 26 O 1.43744 * 107.29564 * 357.90152 * 6 5 4 27 27 H 1.09001 * 109.47168 * 181.42505 * 1 2 3 28 28 H 1.09000 * 109.47366 * 301.42502 * 1 2 3 29 29 H 1.09006 * 109.46861 * 61.42976 * 1 2 3 30 30 H 1.08999 * 110.89081 * 37.37124 * 4 2 1 31 31 H 1.09003 * 111.02102 * 273.69638 * 4 2 1 32 32 H 1.09002 * 110.48794 * 220.51904 * 5 4 2 33 33 H 1.09002 * 110.48657 * 98.00326 * 5 4 2 34 34 H 1.08996 * 109.47066 * 304.99587 * 8 6 5 35 35 H 1.08998 * 109.47441 * 65.00264 * 8 6 5 36 36 H 1.07992 * 119.95659 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.78938 * 180.27389 * 12 11 10 38 38 H 1.08002 * 119.84018 * 179.74389 * 13 12 11 39 39 H 1.08003 * 120.04938 * 180.02562 * 14 13 12 40 40 H 0.96998 * 119.99793 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0807 -0.7875 1.2191 5 6 3.4831 -1.2127 0.7203 6 6 3.3852 -1.1209 -0.8149 7 1 4.0845 -0.3720 -1.1867 8 6 3.7006 -2.4819 -1.4386 9 8 3.7218 -2.3600 -2.8623 10 6 3.9883 -3.4844 -3.5727 11 6 4.2309 -4.6818 -2.9167 12 6 4.4963 -5.8268 -3.6416 13 6 4.5342 -5.7876 -5.0274 14 6 4.3015 -4.6065 -5.6960 15 6 4.0260 -3.4401 -4.9755 16 6 3.7762 -2.1709 -5.6850 17 8 3.5371 -1.1570 -5.0536 18 6 3.8145 -2.1313 -7.1022 19 1 4.0261 -3.0303 -7.6620 20 6 3.5774 -0.9241 -7.7770 21 7 3.3211 0.1625 -7.1004 22 14 3.6271 -0.8720 -9.6437 23 1 2.2721 -1.1518 -10.1830 24 1 4.0692 0.4736 -10.0898 25 1 4.5796 -1.8965 -10.1423 26 8 2.0384 -0.7336 -1.1348 27 1 -0.3633 -1.0274 0.0256 28 1 -0.3634 0.5358 0.8769 29 1 -0.3633 0.4915 -0.9026 30 1 1.4619 -1.6596 1.4302 31 1 2.1580 -0.1455 2.0967 32 1 3.7038 -2.2349 1.0280 33 1 4.2449 -0.5294 1.0955 34 1 4.6742 -2.8251 -1.0889 35 1 2.9355 -3.2014 -1.1469 36 1 4.2081 -4.7198 -1.8377 37 1 4.6802 -6.7577 -3.1259 38 1 4.7468 -6.6878 -5.5849 39 1 4.3316 -4.5810 -6.7753 40 1 3.1577 0.9971 -7.5669 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = -101.722778 kcal Electronic energy + Delta-G solvation = -23046.658622 eV Core-core repulsion = 19598.684447 eV Total energy + Delta-G solvation = -3447.974175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.81009 -39.05041 -36.77279 -35.88393 -32.55784 -32.22845 -32.14269 -30.49228 -29.28894 -27.84709 -26.53225 -24.06899 -22.79619 -21.52709 -21.12423 -20.77493 -19.54104 -17.50382 -16.58530 -16.31078 -16.07968 -15.52344 -15.30495 -14.51156 -14.40027 -14.38558 -13.88654 -13.68866 -13.20927 -13.14809 -12.64650 -12.50234 -12.24711 -12.17376 -11.70628 -11.60919 -11.39682 -11.31991 -11.24964 -11.00747 -10.90780 -10.82727 -10.73773 -10.45090 -10.34862 -10.20721 -9.99360 -9.41630 -8.86116 -8.14233 -7.35764 -7.24556 -6.13516 -4.74159 1.87614 2.14528 3.12672 3.19676 3.22989 3.72221 3.92056 4.10432 4.16405 4.49783 4.67886 4.74970 4.87227 5.06288 5.22160 5.29688 5.34188 5.40709 5.44816 5.48736 5.52673 5.58184 5.64168 5.71609 5.79826 5.91593 5.97360 5.99340 6.07635 6.13178 6.19135 6.25739 6.40785 6.76453 6.99084 7.00846 7.15523 7.23737 7.38210 7.55802 8.16141 8.21987 8.93691 8.99739 10.48033 10.72212 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.005018 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.637832 B = 5578.156759 C = 7225.544876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.068 0.932 4 C -0.150 4.150 5 C -0.149 4.149 6 C 0.084 3.916 7 H 0.081 0.919 8 C 0.057 3.943 9 O -0.260 6.260 10 C 0.151 3.849 11 C -0.231 4.231 12 C -0.093 4.093 13 C -0.177 4.177 14 C -0.059 4.059 15 C -0.136 4.136 16 C 0.390 3.610 17 O -0.512 6.512 18 C -0.523 4.523 19 H 0.071 0.929 20 C 0.081 3.919 21 N -0.738 5.738 22 Si 0.903 3.097 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.262 1.262 26 O -0.348 6.348 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 -4.815 13.692 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.008 3.992 3 H 0.086 0.914 4 C -0.187 4.187 5 C -0.187 4.187 6 C 0.025 3.975 7 H 0.099 0.901 8 C -0.019 4.019 9 O -0.171 6.171 10 C 0.104 3.896 11 C -0.250 4.250 12 C -0.112 4.112 13 C -0.196 4.196 14 C -0.077 4.077 15 C -0.138 4.138 16 C 0.283 3.717 17 O -0.399 6.399 18 C -0.555 4.555 19 H 0.089 0.911 20 C -0.142 4.142 21 N -0.367 5.367 22 Si 0.727 3.273 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.186 1.186 26 O -0.267 6.267 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.690 -3.978 13.797 14.376 hybrid contribution 0.280 -0.410 -0.565 0.752 sum -0.410 -4.389 13.233 13.947 Atomic orbital electron populations 1.21746 0.93286 1.02787 1.02406 1.23178 0.95315 0.95569 0.85137 0.91363 1.23224 0.96035 1.00869 0.98603 1.22926 0.98178 1.02919 0.94644 1.22653 0.86250 0.95752 0.92807 0.90139 1.22940 1.00268 0.96981 0.81761 1.86525 1.84234 1.29997 1.16348 1.19443 0.93613 0.85064 0.91499 1.21059 1.11257 0.93369 0.99294 1.20789 0.99382 0.96844 0.94139 1.20937 1.06332 0.98111 0.94174 1.21402 0.95087 0.90852 1.00358 1.21579 1.02396 0.99691 0.90098 1.18003 0.79969 0.84734 0.89014 1.90574 1.45794 1.34300 1.69236 1.20888 1.45770 0.95494 0.93302 0.91060 1.25950 0.92975 0.95199 1.00027 1.69983 1.30080 0.99707 1.36930 0.86434 0.79333 0.78386 0.83111 1.19512 1.20295 1.18616 1.89134 1.26603 1.73186 1.37811 0.91943 0.91474 0.91475 0.90489 0.90317 0.90361 0.90155 0.91689 0.92167 0.86591 0.86988 0.86810 0.84785 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 37.16 0.36 -1.33 16 2 C 0.07 0.88 3.97 -25.55 -0.10 0.77 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.15 -1.53 6.61 -24.60 -0.16 -1.69 16 5 C -0.15 -1.62 6.63 -25.20 -0.17 -1.79 16 6 C 0.08 1.34 3.70 -26.16 -0.10 1.25 16 7 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 8 C 0.06 0.98 4.20 37.16 0.16 1.13 16 9 O -0.26 -6.18 8.21 -43.21 -0.35 -6.53 16 10 C 0.15 3.47 6.71 -38.61 -0.26 3.21 16 11 C -0.23 -4.25 9.03 -39.48 -0.36 -4.60 16 12 C -0.09 -1.55 10.04 -39.47 -0.40 -1.95 16 13 C -0.18 -3.11 10.02 -39.61 -0.40 -3.50 16 14 C -0.06 -1.24 9.43 -39.18 -0.37 -1.61 16 15 C -0.14 -3.42 5.90 -104.69 -0.62 -4.04 16 16 C 0.39 11.67 6.91 -34.42 -0.24 11.43 16 17 O -0.51 -17.16 13.71 -16.74 -0.23 -17.39 16 18 C -0.52 -14.95 8.86 -37.43 -0.33 -15.29 16 19 H 0.07 1.84 6.02 -52.49 -0.32 1.52 16 20 C 0.08 2.26 5.50 -17.32 -0.10 2.16 16 21 N -0.74 -22.09 11.73 55.56 0.65 -21.44 16 22 Si 0.90 19.93 29.56 -169.99 -5.03 14.90 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 O -0.35 -6.49 10.89 -36.74 -0.40 -6.89 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 35 H 0.06 0.96 7.67 -51.93 -0.40 0.57 16 36 H 0.12 1.77 6.30 -52.49 -0.33 1.44 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 2.70 6.20 -52.48 -0.33 2.37 16 40 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -36.26 333.62 -8.93 -45.19 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.53 Total: 2.99 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.07 Total: -15.85 kcal Atomic # 7 Polarization: -22.09 SS G_CDS: 0.65 Total: -21.44 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.98 Total: -30.81 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.26 -8.93 -45.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.537 kcal (2) G-P(sol) polarization free energy of solvation -36.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds