Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.55002 * 2 1 4 4 C 1.55227 * 110.77658 * 122.85943 * 2 1 3 5 5 C 1.54813 * 101.98357 * 155.50393 * 4 2 1 6 6 C 1.54098 * 104.30472 * 339.26359 * 5 4 2 7 7 H 1.08999 * 109.88182 * 117.33024 * 6 5 4 8 8 C 1.53003 * 109.87631 * 238.32963 * 6 5 4 9 9 O 1.42904 * 109.46956 * 185.00330 * 8 6 5 10 10 C 1.35641 * 116.99826 * 180.02562 * 9 8 6 11 11 C 1.38666 * 120.15847 * 359.72088 * 10 9 8 12 12 C 1.38092 * 120.08659 * 179.72109 * 11 10 9 13 13 C 1.38688 * 120.41858 * 0.56272 * 12 11 10 14 14 C 1.37705 * 120.31887 * 359.71397 * 13 12 11 15 15 C 1.39838 * 119.90185 * 0.02562 * 14 13 12 16 16 C 1.47537 * 120.20543 * 179.97438 * 15 14 13 17 17 O 1.21812 * 119.99879 * 180.02562 * 16 15 14 18 18 C 1.41826 * 119.99997 * 0.02562 * 16 15 14 19 19 H 1.08002 * 119.99951 * 0.02562 * 18 16 15 20 20 C 1.40318 * 120.00165 * 180.02562 * 18 16 15 21 21 N 1.30544 * 120.00039 * 359.97438 * 20 18 16 22 22 Si 1.86809 * 120.00292 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47030 * 89.99886 * 22 20 18 24 24 H 1.48494 * 109.47019 * 210.00060 * 22 20 18 25 25 H 1.48502 * 109.46866 * 330.00022 * 22 20 18 26 26 O 1.43744 * 107.29564 * 357.90152 * 6 5 4 27 27 H 1.09001 * 109.47168 * 181.42505 * 1 2 3 28 28 H 1.09000 * 109.47366 * 301.42502 * 1 2 3 29 29 H 1.09006 * 109.46861 * 61.42976 * 1 2 3 30 30 H 1.08999 * 110.89081 * 37.37124 * 4 2 1 31 31 H 1.09003 * 111.02102 * 273.69638 * 4 2 1 32 32 H 1.09002 * 110.48794 * 220.51904 * 5 4 2 33 33 H 1.09002 * 110.48657 * 98.00326 * 5 4 2 34 34 H 1.08996 * 109.47066 * 304.99587 * 8 6 5 35 35 H 1.08998 * 109.47441 * 65.00264 * 8 6 5 36 36 H 1.07992 * 119.95659 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.78938 * 180.27389 * 12 11 10 38 38 H 1.08002 * 119.84018 * 179.74389 * 13 12 11 39 39 H 1.08003 * 120.04938 * 180.02562 * 14 13 12 40 40 H 0.96998 * 119.99793 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0807 -0.7875 1.2191 5 6 3.4831 -1.2127 0.7203 6 6 3.3852 -1.1209 -0.8149 7 1 4.0845 -0.3720 -1.1867 8 6 3.7006 -2.4819 -1.4386 9 8 3.7218 -2.3600 -2.8623 10 6 3.9883 -3.4844 -3.5727 11 6 4.2309 -4.6818 -2.9167 12 6 4.4963 -5.8268 -3.6416 13 6 4.5342 -5.7876 -5.0274 14 6 4.3015 -4.6065 -5.6960 15 6 4.0260 -3.4401 -4.9755 16 6 3.7762 -2.1709 -5.6850 17 8 3.5371 -1.1570 -5.0536 18 6 3.8145 -2.1313 -7.1022 19 1 4.0261 -3.0303 -7.6620 20 6 3.5774 -0.9241 -7.7770 21 7 3.3211 0.1625 -7.1004 22 14 3.6271 -0.8720 -9.6437 23 1 2.2721 -1.1518 -10.1830 24 1 4.0692 0.4736 -10.0898 25 1 4.5796 -1.8965 -10.1423 26 8 2.0384 -0.7336 -1.1348 27 1 -0.3633 -1.0274 0.0256 28 1 -0.3634 0.5358 0.8769 29 1 -0.3633 0.4915 -0.9026 30 1 1.4619 -1.6596 1.4302 31 1 2.1580 -0.1455 2.0967 32 1 3.7038 -2.2349 1.0280 33 1 4.2449 -0.5294 1.0955 34 1 4.6742 -2.8251 -1.0889 35 1 2.9355 -3.2014 -1.1469 36 1 4.2081 -4.7198 -1.8377 37 1 4.6802 -6.7577 -3.1259 38 1 4.7468 -6.6878 -5.5849 39 1 4.3316 -4.5810 -6.7753 40 1 3.1577 0.9971 -7.5669 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = -125.643228 kcal Electronic energy + Delta-G solvation = -23047.695891 eV Core-core repulsion = 19598.684447 eV Total energy + Delta-G solvation = -3449.011443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21321 -40.38882 -38.54587 -37.77541 -34.71403 -33.36260 -33.24428 -32.17006 -30.73445 -29.19824 -28.50134 -25.21321 -24.51730 -22.88645 -22.24029 -22.03901 -21.34419 -19.03147 -18.46119 -17.66548 -17.37711 -17.22217 -16.81626 -16.07759 -15.87854 -15.71481 -15.24602 -14.95940 -14.85395 -14.58940 -14.23745 -14.10410 -13.56195 -13.33150 -13.25324 -13.10953 -12.85162 -12.72042 -12.67076 -12.61192 -12.23793 -12.06819 -12.04947 -11.95878 -11.79508 -11.74917 -11.53081 -10.96512 -10.65984 -9.73126 -9.44764 -8.97220 -8.25916 -7.00506 0.27354 0.61893 1.36070 1.38735 1.54140 2.22216 2.30683 2.37131 2.82472 2.92909 3.54146 3.67616 3.81582 3.84974 3.94419 3.99559 4.04370 4.13450 4.23395 4.25993 4.33738 4.45918 4.50480 4.57100 4.62893 4.68620 4.80660 4.85856 4.89405 4.99733 5.05524 5.17289 5.18467 5.22419 5.24045 5.42235 5.54754 5.71768 5.96773 6.03767 6.10032 6.66855 6.75073 6.92618 8.36173 8.58240 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.005018 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.637832 B = 5578.156759 C = 7225.544876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 H 0.065 0.935 4 C -0.136 4.136 5 C -0.136 4.136 6 C 0.074 3.926 7 H 0.048 0.952 8 C 0.051 3.949 9 O -0.311 6.311 10 C 0.126 3.874 11 C -0.225 4.225 12 C -0.071 4.071 13 C -0.169 4.169 14 C -0.063 4.063 15 C -0.197 4.197 16 C 0.363 3.637 17 O -0.572 6.572 18 C -0.553 4.553 19 H 0.093 0.907 20 C 0.021 3.979 21 N -0.795 5.795 22 Si 0.997 3.003 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.243 1.243 26 O -0.400 6.400 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.133 0.867 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -8.161 14.871 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.009 4.009 3 H 0.083 0.917 4 C -0.173 4.173 5 C -0.173 4.173 6 C 0.016 3.984 7 H 0.066 0.934 8 C -0.024 4.024 9 O -0.223 6.223 10 C 0.080 3.920 11 C -0.244 4.244 12 C -0.088 4.088 13 C -0.186 4.186 14 C -0.081 4.081 15 C -0.199 4.199 16 C 0.261 3.739 17 O -0.464 6.464 18 C -0.583 4.583 19 H 0.111 0.889 20 C -0.197 4.197 21 N -0.425 5.425 22 Si 0.815 3.185 23 H -0.183 1.183 24 H -0.194 1.194 25 H -0.166 1.166 26 O -0.321 6.321 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.184 0.816 38 H 0.176 0.824 39 H 0.151 0.849 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.051 -7.359 14.992 16.700 hybrid contribution 0.054 0.559 -0.836 1.007 sum 0.105 -6.800 14.156 15.704 Atomic orbital electron populations 1.21773 0.92357 1.02911 1.02867 1.23531 0.96244 0.95628 0.85465 0.91672 1.23202 0.95143 1.01172 0.97812 1.22923 0.99318 1.05007 0.90091 1.22824 0.84762 0.94411 0.96430 0.93369 1.23310 1.02111 0.98076 0.78938 1.86472 1.84601 1.31652 1.19598 1.19751 0.94480 0.86628 0.91152 1.21444 1.09795 0.91964 1.01152 1.21450 0.95485 0.98004 0.93889 1.21384 1.04320 0.97853 0.95083 1.21480 0.95134 0.91100 1.00432 1.21281 1.07707 0.99049 0.91854 1.18806 0.78756 0.86128 0.90207 1.90507 1.48568 1.36869 1.70474 1.21427 1.46249 0.96983 0.93686 0.88927 1.27301 0.91381 0.94114 1.06875 1.70166 1.31289 1.00863 1.40142 0.85047 0.80119 0.79135 0.74224 1.18328 1.19376 1.16621 1.89092 1.27868 1.74034 1.41082 0.92101 0.87978 0.93838 0.89573 0.87144 0.87950 0.88290 0.88782 0.90981 0.83128 0.81574 0.82421 0.84916 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.67 71.98 0.70 -2.67 16 2 C 0.05 1.32 3.97 31.36 0.12 1.44 16 3 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.14 -2.48 6.61 31.98 0.21 -2.27 16 5 C -0.14 -2.73 6.63 31.58 0.21 -2.52 16 6 C 0.07 2.49 3.70 30.97 0.11 2.60 16 7 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 8 C 0.05 1.78 4.20 71.98 0.30 2.08 16 9 O -0.31 -15.80 8.21 -66.04 -0.54 -16.34 16 10 C 0.13 6.01 6.71 22.90 0.15 6.16 16 11 C -0.23 -7.74 9.03 22.34 0.20 -7.53 16 12 C -0.07 -2.01 10.04 22.34 0.22 -1.79 16 13 C -0.17 -5.30 10.02 22.25 0.22 -5.08 16 14 C -0.06 -2.66 9.43 22.53 0.21 -2.45 16 15 C -0.20 -10.45 5.90 -19.91 -0.12 -10.56 16 16 C 0.36 23.51 6.91 25.61 0.18 23.68 16 17 O -0.57 -42.06 13.71 16.17 0.22 -41.84 16 18 C -0.55 -33.34 8.86 23.66 0.21 -33.13 16 19 H 0.09 4.94 6.02 -2.91 -0.02 4.93 16 20 C 0.02 1.21 5.50 85.39 0.47 1.68 16 21 N -0.79 -50.82 11.73 21.88 0.26 -50.57 16 22 Si 1.00 41.97 29.56 68.60 2.03 43.99 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.24 -9.41 7.11 99.48 0.71 -8.70 16 26 O -0.40 -16.05 10.89 -147.54 -1.61 -17.65 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.09 1.44 8.06 -2.39 -0.02 1.42 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.58 7.70 -2.39 -0.02 1.56 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 2.62 7.65 -2.39 -0.02 2.60 16 35 H 0.07 2.28 7.67 -2.39 -0.02 2.26 16 36 H 0.15 4.02 6.30 -2.91 -0.02 4.00 16 37 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 38 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.13 5.39 6.20 -2.91 -0.02 5.37 16 40 H 0.28 15.94 8.29 -92.71 -0.77 15.17 16 Total: -1.00 -91.43 333.62 4.81 -86.62 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 1.04 Total: 26.14 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.41 Total: -30.36 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.26 Total: -50.57 kcal Atomic # 8 Polarization: -73.91 SS G_CDS: -1.93 Total: -75.84 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -91.43 4.81 -86.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.024 kcal (2) G-P(sol) polarization free energy of solvation -91.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds