Wall clock time and date at job start Tue Mar 31 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47913 * 2 1 4 4 C 1.53097 * 109.47777 * 120.01500 * 2 1 3 5 5 C 1.53176 * 109.16072 * 177.60345 * 4 2 1 6 6 H 1.08995 * 109.54461 * 62.98145 * 5 4 2 7 7 O 1.42899 * 109.53972 * 183.15331 * 5 4 2 8 8 C 1.35668 * 116.99953 * 204.58863 * 7 5 4 9 9 C 1.39168 * 119.90422 * 174.63786 * 8 7 5 10 10 C 1.37115 * 120.09047 * 180.02562 * 9 8 7 11 11 C 1.39951 * 119.90901 * 359.97438 * 10 9 8 12 12 C 1.47561 * 120.09590 * 179.97438 * 11 10 9 13 13 O 1.21828 * 120.00358 * 359.97438 * 12 11 10 14 14 C 1.41760 * 120.00304 * 180.02562 * 12 11 10 15 15 H 1.08002 * 119.99999 * 359.97438 * 14 12 11 16 16 C 1.40346 * 120.00625 * 180.27429 * 14 12 11 17 17 N 1.30531 * 119.99429 * 359.72353 * 16 14 12 18 18 Si 1.86793 * 120.00325 * 179.72092 * 16 14 12 19 19 H 1.48499 * 109.47418 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47024 * 120.00086 * 18 16 14 21 21 H 1.48502 * 109.47236 * 239.99948 * 18 16 14 22 22 C 1.39949 * 119.81061 * 0.25110 * 11 10 9 23 23 C 1.37120 * 119.90365 * 359.51060 * 22 11 10 24 24 C 1.53172 * 109.03987 * 303.02035 * 5 4 2 25 25 C 1.53090 * 109.16272 * 56.98071 * 24 5 4 26 26 O 1.42903 * 109.41697 * 302.39115 * 25 24 5 27 27 H 1.09003 * 109.47162 * 299.98517 * 1 2 3 28 28 H 1.09008 * 109.46617 * 59.98478 * 1 2 3 29 29 H 1.08999 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.52203 * 57.70227 * 4 2 1 31 31 H 1.09003 * 109.57594 * 297.54363 * 4 2 1 32 32 H 1.07995 * 119.95362 * 0.02588 * 9 8 7 33 33 H 1.08005 * 120.04455 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99714 * 180.02562 * 17 16 14 35 35 H 1.07996 * 120.04976 * 179.72694 * 22 11 10 36 36 H 1.08000 * 119.95544 * 180.23177 * 23 22 11 37 37 H 1.08999 * 109.52353 * 176.88757 * 24 5 4 38 38 H 1.08997 * 109.52366 * 297.08010 * 24 5 4 39 39 H 1.08998 * 109.48178 * 182.40841 * 25 24 5 40 40 H 1.09003 * 109.49139 * 62.38100 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7220 1.2498 5 6 3.5710 -0.7704 1.2126 6 1 3.9687 0.2440 1.2428 7 8 4.0535 -1.5066 2.3382 8 6 5.3151 -1.2353 2.7569 9 6 5.8063 -1.8340 3.9132 10 6 7.0806 -1.5621 4.3400 11 6 7.8878 -0.6816 3.6108 12 6 9.2597 -0.3856 4.0667 13 8 9.6910 -0.9076 5.0795 14 6 10.0755 0.5070 3.3269 15 1 9.6930 0.9701 2.4293 16 6 11.3822 0.7841 3.7573 17 7 11.8446 0.2240 4.8419 18 14 12.4598 1.9543 2.7781 19 1 11.7062 2.4521 1.5993 20 1 12.8509 3.1018 3.6356 21 1 13.6787 1.2397 2.3212 22 6 7.3882 -0.0781 2.4512 23 6 6.1144 -0.3593 2.0286 24 6 4.0179 -1.4597 -0.0803 25 6 3.4310 -0.7092 -1.2786 26 8 2.0069 -0.6743 -1.1662 27 1 -0.3634 0.5136 0.8901 28 1 -0.3633 0.5141 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6444 -1.7373 1.2712 31 1 1.7145 -0.1850 2.1406 32 1 5.1829 -2.5137 4.4751 33 1 7.4609 -2.0268 5.2378 34 1 12.7477 0.4158 5.1396 35 1 8.0063 0.6054 1.8880 36 1 5.7294 0.1030 1.1318 37 1 5.1061 -1.4492 -0.1413 38 1 3.6617 -2.4898 -0.0857 39 1 3.7105 -1.2202 -2.1999 40 1 3.8194 0.3092 -1.2957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:45 Heat of formation + Delta-G solvation = -111.160383 kcal Electronic energy + Delta-G solvation = -22528.540016 eV Core-core repulsion = 19080.156596 eV Total energy + Delta-G solvation = -3448.383420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46786 -39.02862 -37.47514 -35.73803 -33.22123 -32.79558 -32.70171 -30.55291 -29.49489 -27.94716 -26.63105 -24.55357 -23.09068 -22.26039 -21.80641 -20.51512 -19.53668 -17.95240 -16.70874 -16.61580 -16.40325 -15.62668 -15.44249 -15.29122 -14.60912 -14.44473 -14.20660 -13.69320 -13.36907 -13.08084 -12.98419 -12.86149 -12.66424 -12.56130 -12.29840 -12.12097 -11.68991 -11.53258 -11.39730 -11.29298 -11.22382 -10.98792 -10.67788 -10.56781 -10.36751 -10.25828 -10.02336 -9.82920 -9.00972 -8.48029 -7.50383 -7.48342 -6.33157 -4.93338 1.81416 1.99269 3.01218 3.10435 3.14568 3.22067 3.46713 3.97796 4.00356 4.40766 4.48438 4.56224 4.63347 4.76251 4.83397 4.95548 5.05021 5.15483 5.31500 5.33341 5.35660 5.37875 5.48568 5.56791 5.68159 5.79100 5.81024 5.84912 5.88397 5.94798 6.10261 6.11655 6.30333 6.61316 6.81771 6.91788 7.02734 7.21973 7.33124 7.36084 7.81680 8.00729 8.76413 8.81763 10.28591 10.50772 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.003269 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.226505 B = 8563.160641 C = 9324.935531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.061 0.939 4 C -0.145 4.145 5 C 0.086 3.914 6 H 0.074 0.926 7 O -0.311 6.311 8 C 0.111 3.889 9 C -0.162 4.162 10 C -0.056 4.056 11 C -0.136 4.136 12 C 0.389 3.611 13 O -0.543 6.543 14 C -0.517 4.517 15 H 0.074 0.926 16 C 0.079 3.921 17 N -0.735 5.735 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.273 1.273 22 C -0.057 4.057 23 C -0.222 4.222 24 C -0.183 4.183 25 C 0.066 3.934 26 O -0.380 6.380 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.274 0.726 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.587 0.995 -10.827 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.079 0.921 4 C -0.183 4.183 5 C 0.029 3.971 6 H 0.092 0.908 7 O -0.226 6.226 8 C 0.067 3.933 9 C -0.181 4.181 10 C -0.074 4.074 11 C -0.137 4.137 12 C 0.285 3.715 13 O -0.433 6.433 14 C -0.548 4.548 15 H 0.092 0.908 16 C -0.144 4.144 17 N -0.363 5.363 18 Si 0.730 3.270 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.198 1.198 22 C -0.075 4.075 23 C -0.241 4.241 24 C -0.221 4.221 25 C -0.011 4.011 26 O -0.299 6.299 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.085 0.915 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.548 0.473 -10.262 20.334 hybrid contribution 0.834 0.833 -0.525 1.290 sum -16.714 1.306 -10.786 19.935 Atomic orbital electron populations 1.21757 0.92533 1.03187 1.02622 1.22067 0.95451 0.94989 0.84286 0.92115 1.22320 0.93460 1.03305 0.99224 1.22328 0.94336 0.95481 0.84906 0.90779 1.86004 1.28114 1.61641 1.46824 1.19134 0.83569 0.96278 0.94331 1.20191 0.97003 1.04481 0.96424 1.21116 0.91706 0.95612 0.99001 1.21822 0.99751 0.96986 0.95186 1.18076 0.83546 0.83619 0.86289 1.90505 1.74017 1.52418 1.26392 1.20959 0.98048 1.25307 1.10530 0.90816 1.26015 0.98478 0.95481 0.94455 1.69970 1.15547 1.32662 1.18168 0.86327 0.79947 0.80248 0.80477 1.18400 1.19818 1.19813 1.21239 0.93634 0.97217 0.95415 1.21037 0.96584 1.04085 1.02357 1.22819 1.02671 1.01788 0.94851 1.22541 0.80656 0.99707 0.98193 1.87934 1.21127 1.77918 1.42927 0.90866 0.91614 0.91607 0.89883 0.89929 0.86082 0.85035 0.91525 0.85097 0.86332 0.89662 0.89913 0.88230 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.56 37.16 0.36 -0.65 16 2 C 0.09 0.79 3.26 -26.68 -0.09 0.71 16 3 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.15 -1.44 5.07 -26.59 -0.13 -1.57 16 5 C 0.09 1.03 2.19 -26.55 -0.06 0.97 16 6 H 0.07 0.87 6.31 -51.93 -0.33 0.54 16 7 O -0.31 -4.76 9.80 -18.71 -0.18 -4.94 16 8 C 0.11 1.93 6.62 -38.89 -0.26 1.67 16 9 C -0.16 -2.98 9.95 -39.64 -0.39 -3.38 16 10 C -0.06 -1.20 9.57 -39.35 -0.38 -1.57 16 11 C -0.14 -3.20 5.89 -104.81 -0.62 -3.82 16 12 C 0.39 11.01 6.91 -34.44 -0.24 10.77 16 13 O -0.54 -17.31 14.89 5.07 0.08 -17.24 16 14 C -0.52 -14.12 8.86 -37.44 -0.33 -14.45 16 15 H 0.07 1.82 6.01 -52.49 -0.32 1.50 16 16 C 0.08 2.11 5.50 -17.31 -0.10 2.02 16 17 N -0.73 -21.10 11.73 55.57 0.65 -20.45 16 18 Si 0.91 19.06 29.56 -169.99 -5.03 14.04 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.06 -1.14 9.41 -39.35 -0.37 -1.51 16 23 C -0.22 -3.79 8.24 -39.64 -0.33 -4.11 16 24 C -0.18 -1.99 5.42 -26.60 -0.14 -2.13 16 25 C 0.07 0.61 6.84 37.20 0.25 0.86 16 26 O -0.38 -3.97 10.41 -35.23 -0.37 -4.33 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 33 H 0.13 2.85 7.65 -52.48 -0.40 2.45 16 34 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 35 H 0.13 2.51 6.19 -52.49 -0.33 2.19 16 36 H 0.12 1.67 5.37 -52.49 -0.28 1.38 16 37 H 0.08 0.97 6.89 -51.93 -0.36 0.61 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -32.76 329.04 -8.08 -40.84 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.37 Total: 3.33 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.82 Total: -16.21 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.65 Total: -20.45 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.47 Total: -26.51 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.76 -8.08 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.323 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds