Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47913 * 2 1 4 4 C 1.53097 * 109.47777 * 120.01500 * 2 1 3 5 5 C 1.53176 * 109.16072 * 177.60345 * 4 2 1 6 6 H 1.08995 * 109.54461 * 62.98145 * 5 4 2 7 7 O 1.42899 * 109.53972 * 183.15331 * 5 4 2 8 8 C 1.35668 * 116.99953 * 204.58863 * 7 5 4 9 9 C 1.39168 * 119.90422 * 174.63786 * 8 7 5 10 10 C 1.37115 * 120.09047 * 180.02562 * 9 8 7 11 11 C 1.39951 * 119.90901 * 359.97438 * 10 9 8 12 12 C 1.47561 * 120.09590 * 179.97438 * 11 10 9 13 13 O 1.21828 * 120.00358 * 359.97438 * 12 11 10 14 14 C 1.41760 * 120.00304 * 180.02562 * 12 11 10 15 15 H 1.08002 * 119.99999 * 359.97438 * 14 12 11 16 16 C 1.40346 * 120.00625 * 180.27429 * 14 12 11 17 17 N 1.30531 * 119.99429 * 359.72353 * 16 14 12 18 18 Si 1.86793 * 120.00325 * 179.72092 * 16 14 12 19 19 H 1.48499 * 109.47418 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47024 * 120.00086 * 18 16 14 21 21 H 1.48502 * 109.47236 * 239.99948 * 18 16 14 22 22 C 1.39949 * 119.81061 * 0.25110 * 11 10 9 23 23 C 1.37120 * 119.90365 * 359.51060 * 22 11 10 24 24 C 1.53172 * 109.03987 * 303.02035 * 5 4 2 25 25 C 1.53090 * 109.16272 * 56.98071 * 24 5 4 26 26 O 1.42903 * 109.41697 * 302.39115 * 25 24 5 27 27 H 1.09003 * 109.47162 * 299.98517 * 1 2 3 28 28 H 1.09008 * 109.46617 * 59.98478 * 1 2 3 29 29 H 1.08999 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.52203 * 57.70227 * 4 2 1 31 31 H 1.09003 * 109.57594 * 297.54363 * 4 2 1 32 32 H 1.07995 * 119.95362 * 0.02588 * 9 8 7 33 33 H 1.08005 * 120.04455 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99714 * 180.02562 * 17 16 14 35 35 H 1.07996 * 120.04976 * 179.72694 * 22 11 10 36 36 H 1.08000 * 119.95544 * 180.23177 * 23 22 11 37 37 H 1.08999 * 109.52353 * 176.88757 * 24 5 4 38 38 H 1.08997 * 109.52366 * 297.08010 * 24 5 4 39 39 H 1.08998 * 109.48178 * 182.40841 * 25 24 5 40 40 H 1.09003 * 109.49139 * 62.38100 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7220 1.2498 5 6 3.5710 -0.7704 1.2126 6 1 3.9687 0.2440 1.2428 7 8 4.0535 -1.5066 2.3382 8 6 5.3151 -1.2353 2.7569 9 6 5.8063 -1.8340 3.9132 10 6 7.0806 -1.5621 4.3400 11 6 7.8878 -0.6816 3.6108 12 6 9.2597 -0.3856 4.0667 13 8 9.6910 -0.9076 5.0795 14 6 10.0755 0.5070 3.3269 15 1 9.6930 0.9701 2.4293 16 6 11.3822 0.7841 3.7573 17 7 11.8446 0.2240 4.8419 18 14 12.4598 1.9543 2.7781 19 1 11.7062 2.4521 1.5993 20 1 12.8509 3.1018 3.6356 21 1 13.6787 1.2397 2.3212 22 6 7.3882 -0.0781 2.4512 23 6 6.1144 -0.3593 2.0286 24 6 4.0179 -1.4597 -0.0803 25 6 3.4310 -0.7092 -1.2786 26 8 2.0069 -0.6743 -1.1662 27 1 -0.3634 0.5136 0.8901 28 1 -0.3633 0.5141 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6444 -1.7373 1.2712 31 1 1.7145 -0.1850 2.1406 32 1 5.1829 -2.5137 4.4751 33 1 7.4609 -2.0268 5.2378 34 1 12.7477 0.4158 5.1396 35 1 8.0063 0.6054 1.8880 36 1 5.7294 0.1030 1.1318 37 1 5.1061 -1.4492 -0.1413 38 1 3.6617 -2.4898 -0.0857 39 1 3.7105 -1.2202 -2.1999 40 1 3.8194 0.3092 -1.2957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = -131.526380 kcal Electronic energy + Delta-G solvation = -22529.423152 eV Core-core repulsion = 19080.156596 eV Total energy + Delta-G solvation = -3449.266556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58735 -40.16908 -39.06338 -37.50393 -34.79538 -33.99579 -33.65307 -32.07118 -31.11543 -28.90647 -28.36433 -25.52064 -24.42706 -23.56375 -22.96807 -21.63298 -21.08356 -19.24501 -18.61936 -17.60037 -17.36223 -17.22154 -16.61887 -16.22286 -15.95542 -15.76100 -15.52031 -14.96079 -14.76259 -14.59128 -14.35723 -14.27217 -13.92709 -13.54173 -13.37509 -13.13846 -13.12388 -12.91066 -12.84151 -12.58913 -12.49200 -12.19574 -12.09299 -12.00898 -11.56237 -11.50052 -11.31452 -11.01228 -10.63598 -10.00094 -9.62464 -9.05231 -8.35241 -7.08261 0.19504 0.46435 1.37135 1.38221 1.56892 2.07416 2.20134 2.20601 2.79765 2.83980 3.58791 3.63952 3.74007 3.83511 3.84914 3.89748 3.99261 4.13159 4.19866 4.25778 4.36527 4.45585 4.50357 4.55028 4.66255 4.69801 4.76463 4.81451 4.95002 4.98936 5.04478 5.09421 5.15117 5.20155 5.31621 5.32184 5.43806 5.72746 5.79441 5.96793 6.23952 6.45435 6.69173 6.79709 8.24537 8.48702 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.003269 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.226505 B = 8563.160641 C = 9324.935531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.088 3.912 3 H 0.072 0.928 4 C -0.141 4.141 5 C 0.075 3.925 6 H 0.084 0.916 7 O -0.314 6.314 8 C 0.130 3.870 9 C -0.163 4.163 10 C -0.066 4.066 11 C -0.179 4.179 12 C 0.364 3.636 13 O -0.601 6.601 14 C -0.542 4.542 15 H 0.097 0.903 16 C 0.021 3.979 17 N -0.789 5.789 18 Si 0.997 3.003 19 H -0.241 1.241 20 H -0.265 1.265 21 H -0.265 1.265 22 C -0.053 4.053 23 C -0.209 4.209 24 C -0.180 4.180 25 C 0.066 3.934 26 O -0.395 6.395 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.282 0.718 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.295 2.696 -13.700 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.090 0.910 4 C -0.179 4.179 5 C 0.019 3.981 6 H 0.101 0.899 7 O -0.228 6.228 8 C 0.085 3.915 9 C -0.181 4.181 10 C -0.085 4.085 11 C -0.181 4.181 12 C 0.264 3.736 13 O -0.496 6.496 14 C -0.572 4.572 15 H 0.115 0.885 16 C -0.198 4.198 17 N -0.418 5.418 18 Si 0.815 3.185 19 H -0.163 1.163 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.071 4.071 23 C -0.227 4.227 24 C -0.218 4.218 25 C -0.010 4.010 26 O -0.314 6.314 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.299 2.174 -13.160 23.460 hybrid contribution 1.168 0.242 0.329 1.238 sum -18.131 2.416 -12.831 22.343 Atomic orbital electron populations 1.21779 0.91304 1.03234 1.03637 1.22214 0.96462 0.95130 0.83165 0.90992 1.22335 0.91805 1.03355 1.00369 1.22713 0.95693 0.95570 0.84102 0.89859 1.86033 1.26619 1.62074 1.48083 1.19179 0.84348 0.94683 0.93313 1.20306 0.95882 1.04752 0.97189 1.21001 0.93006 0.95830 0.98636 1.21469 0.98290 1.00342 0.97962 1.18823 0.85844 0.83236 0.85693 1.90443 1.75897 1.54589 1.28682 1.21483 0.98932 1.25482 1.11344 0.88497 1.27334 0.99988 0.97136 0.95355 1.70122 1.16565 1.34625 1.20499 0.84980 0.77390 0.77166 0.78936 1.16331 1.18987 1.19016 1.21268 0.94904 0.96806 0.94094 1.21287 0.95045 1.03259 1.03100 1.22793 1.02464 1.01529 0.95050 1.22632 0.80148 1.00398 0.97848 1.87933 1.21720 1.78246 1.43530 0.89343 0.91151 0.92064 0.90532 0.89052 0.83850 0.86957 0.90764 0.84363 0.82563 0.90003 0.90780 0.86937 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.56 71.98 0.69 -0.91 16 2 C 0.09 1.27 3.26 30.63 0.10 1.37 16 3 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.14 -2.37 5.07 30.69 0.16 -2.21 16 5 C 0.07 1.54 2.19 30.71 0.07 1.61 16 6 H 0.08 1.60 6.31 -2.39 -0.02 1.58 16 7 O -0.31 -8.70 9.80 -89.85 -0.88 -9.58 16 8 C 0.13 4.22 6.62 22.72 0.15 4.37 16 9 C -0.16 -5.88 9.95 22.23 0.22 -5.66 16 10 C -0.07 -2.94 9.57 22.42 0.21 -2.73 16 11 C -0.18 -8.73 5.89 -19.99 -0.12 -8.85 16 12 C 0.36 21.70 6.91 25.60 0.18 21.87 16 13 O -0.60 -41.05 14.89 -4.76 -0.07 -41.12 16 14 C -0.54 -30.28 8.86 23.65 0.21 -30.07 16 15 H 0.10 4.74 6.01 -2.91 -0.02 4.73 16 16 C 0.02 1.11 5.50 85.40 0.47 1.58 16 17 N -0.79 -47.17 11.73 21.89 0.26 -46.91 16 18 Si 1.00 38.89 29.56 68.60 2.03 40.92 16 19 H -0.24 -8.53 7.11 99.48 0.71 -7.83 16 20 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 C -0.05 -2.06 9.41 22.42 0.21 -1.85 16 23 C -0.21 -6.57 8.24 22.23 0.18 -6.39 16 24 C -0.18 -3.38 5.42 30.68 0.17 -3.21 16 25 C 0.07 1.00 6.84 72.01 0.49 1.49 16 26 O -0.39 -7.07 10.41 -148.98 -1.55 -8.62 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.11 5.28 7.65 -2.91 -0.02 5.26 16 34 H 0.28 14.97 8.29 -92.71 -0.77 14.20 16 35 H 0.14 5.11 6.19 -2.91 -0.02 5.09 16 36 H 0.16 3.71 5.37 -2.91 -0.02 3.70 16 37 H 0.08 1.60 6.89 -2.39 -0.02 1.58 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.38 329.04 4.22 -71.16 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 1.05 Total: 23.72 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 3.39 Total: -29.56 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.26 Total: -46.91 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -2.50 Total: -59.32 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -75.38 4.22 -71.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.370 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds