Wall clock time and date at job start Tue Mar 31 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49045 * 2 1 4 4 C 1.53093 * 109.48128 * 239.97479 * 2 1 3 5 5 C 1.53178 * 109.16325 * 182.41225 * 4 2 1 6 6 H 1.09003 * 109.54291 * 176.93524 * 5 4 2 7 7 O 1.42902 * 109.53766 * 297.10886 * 5 4 2 8 8 C 1.35668 * 116.99675 * 204.79550 * 7 5 4 9 9 C 1.39164 * 119.90456 * 354.78460 * 8 7 5 10 10 C 1.37600 * 120.09031 * 180.02562 * 9 8 7 11 11 C 1.39943 * 119.90386 * 359.97438 * 10 9 8 12 12 C 1.47569 * 120.09214 * 179.97438 * 11 10 9 13 13 O 1.21826 * 119.99888 * 0.02562 * 12 11 10 14 14 C 1.41763 * 120.00181 * 179.72537 * 12 11 10 15 15 H 1.07998 * 119.99795 * 353.45900 * 14 12 11 16 16 C 1.40348 * 120.00206 * 173.46326 * 14 12 11 17 17 N 1.30533 * 119.99591 * 6.11409 * 16 14 12 18 18 Si 1.86790 * 120.00166 * 186.12031 * 16 14 12 19 19 H 1.48501 * 109.47451 * 94.97706 * 18 16 14 20 20 H 1.48501 * 109.47280 * 214.98203 * 18 16 14 21 21 H 1.48507 * 109.47149 * 334.98120 * 18 16 14 22 22 C 1.39953 * 119.81989 * 0.26246 * 11 10 9 23 23 C 1.37599 * 119.89570 * 359.46262 * 22 11 10 24 24 C 1.53173 * 109.11311 * 57.01992 * 5 4 2 25 25 C 1.53278 * 109.06273 * 303.06334 * 24 5 4 26 26 O 1.42897 * 109.46493 * 57.55481 * 25 24 5 27 27 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47506 * 300.02808 * 1 2 3 29 29 H 1.09004 * 109.47021 * 60.03281 * 1 2 3 30 30 H 1.09001 * 109.52778 * 62.49770 * 4 2 1 31 31 H 1.09007 * 109.57336 * 302.34031 * 4 2 1 32 32 H 1.07998 * 119.95439 * 359.97384 * 9 8 7 33 33 H 1.07992 * 120.04568 * 180.02562 * 10 9 8 34 34 H 0.96997 * 119.99576 * 180.02562 * 17 16 14 35 35 H 1.07993 * 120.05360 * 179.74618 * 22 11 10 36 36 H 1.08001 * 119.94732 * 180.30330 * 23 22 11 37 37 H 1.08998 * 109.52296 * 62.88160 * 24 5 4 38 38 H 1.09004 * 109.52261 * 183.07211 * 24 5 4 39 39 H 1.08997 * 109.45871 * 297.55153 * 25 24 5 40 40 H 1.09005 * 109.46971 * 177.55834 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7709 -1.2121 6 1 3.9393 -1.3313 -2.0715 7 8 4.0926 0.5591 -1.2497 8 6 5.3506 0.7138 -1.7336 9 6 6.1098 -0.4050 -2.0629 10 6 7.3863 -0.2524 -2.5536 11 6 7.9205 1.0301 -2.7217 12 6 9.2892 1.1985 -3.2471 13 8 9.9556 0.2203 -3.5355 14 6 9.8263 2.4987 -3.4221 15 1 9.2005 3.3661 -3.2724 16 6 11.1712 2.6588 -3.7901 17 7 11.8952 1.6141 -4.0872 18 14 11.9250 4.3666 -3.8544 19 1 12.6106 4.6538 -2.5688 20 1 12.9083 4.4322 -4.9653 21 1 10.8553 5.3717 -4.0801 22 6 7.1553 2.1524 -2.3846 23 6 5.8777 1.9910 -1.9000 24 6 4.0195 -1.4608 0.0798 25 6 3.4307 -0.7094 1.2790 26 8 2.0066 -0.6742 1.1664 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5142 0.8897 29 1 -0.3633 0.5133 -0.8903 30 1 1.7149 -0.1843 -2.1399 31 1 1.6444 -1.7375 -1.2721 32 1 5.6969 -1.3943 -1.9324 33 1 7.9747 -1.1211 -2.8093 34 1 12.8248 1.7247 -4.3411 35 1 7.5653 3.1437 -2.5090 36 1 5.2847 2.8566 -1.6442 37 1 3.6631 -2.4909 0.0853 38 1 5.1079 -1.4506 0.1394 39 1 3.8193 0.3089 1.2958 40 1 3.7100 -1.2201 2.2006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:47 Heat of formation + Delta-G solvation = -110.829431 kcal Electronic energy + Delta-G solvation = -22680.943705 eV Core-core repulsion = 19232.574636 eV Total energy + Delta-G solvation = -3448.369069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52982 -38.83554 -37.34918 -35.69464 -33.12966 -32.77651 -32.61834 -30.52424 -29.44402 -27.92323 -26.61989 -24.62974 -23.00781 -22.41216 -21.86428 -20.21867 -19.53673 -17.69998 -16.75399 -16.46102 -16.25229 -15.71399 -15.49969 -15.30280 -14.56037 -14.32478 -14.02812 -13.80445 -13.32264 -13.02673 -12.89888 -12.75294 -12.57232 -12.47962 -12.17289 -12.10911 -11.91704 -11.70525 -11.35411 -11.27963 -11.22391 -10.96565 -10.60552 -10.50906 -10.36712 -10.28621 -9.97633 -9.54538 -8.99478 -8.45374 -7.50667 -7.49668 -6.34080 -4.92617 1.81714 1.97260 3.03124 3.11419 3.14799 3.30159 3.60680 3.97745 4.00637 4.41988 4.53498 4.60566 4.64115 4.75165 5.01963 5.04892 5.24189 5.31919 5.36992 5.37495 5.40259 5.47497 5.51732 5.66511 5.72845 5.77524 5.81530 5.87099 5.92597 5.96152 6.03308 6.11005 6.31329 6.60744 6.82629 7.01445 7.08131 7.22478 7.31607 7.35736 7.80886 8.01462 8.76742 8.81665 10.28310 10.50246 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037281 B = 0.003100 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.875019 B = 9029.320865 C = 9356.051418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.143 4.143 5 C 0.082 3.918 6 H 0.078 0.922 7 O -0.312 6.312 8 C 0.112 3.888 9 C -0.221 4.221 10 C -0.056 4.056 11 C -0.136 4.136 12 C 0.389 3.611 13 O -0.544 6.544 14 C -0.518 4.518 15 H 0.075 0.925 16 C 0.079 3.921 17 N -0.736 5.736 18 Si 0.907 3.093 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.056 4.056 23 C -0.165 4.165 24 C -0.182 4.182 25 C 0.067 3.933 26 O -0.383 6.383 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.274 0.726 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.080 -2.165 7.050 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.085 0.915 4 C -0.180 4.180 5 C 0.026 3.974 6 H 0.096 0.904 7 O -0.227 6.227 8 C 0.067 3.933 9 C -0.239 4.239 10 C -0.074 4.074 11 C -0.138 4.138 12 C 0.285 3.715 13 O -0.435 6.435 14 C -0.549 4.549 15 H 0.093 0.907 16 C -0.144 4.144 17 N -0.364 5.364 18 Si 0.730 3.270 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.075 4.075 23 C -0.184 4.184 24 C -0.220 4.220 25 C -0.010 4.010 26 O -0.302 6.302 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.891 -2.686 7.067 19.423 hybrid contribution 0.645 0.719 -0.263 1.001 sum -17.247 -1.968 6.804 18.644 Atomic orbital electron populations 1.21776 0.93174 1.02741 1.02489 1.22039 0.94680 0.95787 0.84543 0.91496 1.22316 0.93138 1.02688 0.99879 1.22368 0.93961 0.83032 0.98065 0.90381 1.85984 1.28189 1.29093 1.79392 1.19110 0.83732 0.94317 0.96111 1.21109 0.96732 0.97122 1.08955 1.21190 0.93373 0.98125 0.94751 1.21821 0.99847 0.92062 1.00023 1.18079 0.83216 0.90388 0.79806 1.90500 1.60484 1.42169 1.50311 1.20936 0.95889 0.94668 1.43427 0.90722 1.26014 0.97451 0.98127 0.92793 1.69966 1.07606 1.30860 1.27989 0.86358 0.79454 0.82493 0.78656 1.19433 1.20142 1.18430 1.21400 0.91797 0.99720 0.94545 1.20344 0.96906 0.94174 1.06935 1.22783 1.02681 1.00520 0.95991 1.22480 0.80623 1.00287 0.97561 1.87888 1.21189 1.78026 1.43106 0.91952 0.91828 0.91063 0.89915 0.89432 0.86288 0.85550 0.91489 0.84619 0.86084 0.89904 0.89700 0.92376 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.56 37.16 0.36 -0.79 16 2 C 0.09 0.89 3.12 -26.68 -0.08 0.81 16 3 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 4 C -0.14 -1.38 5.14 -26.59 -0.14 -1.52 16 5 C 0.08 0.96 2.43 -26.55 -0.06 0.90 16 6 H 0.08 0.90 6.29 -51.93 -0.33 0.58 16 7 O -0.31 -4.53 8.75 -18.71 -0.16 -4.69 16 8 C 0.11 1.88 6.61 -38.90 -0.26 1.62 16 9 C -0.22 -3.82 8.22 -39.47 -0.32 -4.14 16 10 C -0.06 -1.18 9.59 -39.18 -0.38 -1.55 16 11 C -0.14 -3.19 5.89 -104.81 -0.62 -3.80 16 12 C 0.39 10.99 6.90 -34.43 -0.24 10.75 16 13 O -0.54 -17.31 14.92 5.08 0.08 -17.24 16 14 C -0.52 -14.13 8.83 -37.44 -0.33 -14.46 16 15 H 0.07 1.84 6.06 -52.49 -0.32 1.52 16 16 C 0.08 2.12 5.49 -17.31 -0.10 2.03 16 17 N -0.74 -21.11 11.76 55.57 0.65 -20.46 16 18 Si 0.91 19.10 29.57 -169.99 -5.03 14.07 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 C -0.06 -1.13 9.43 -39.17 -0.37 -1.50 16 23 C -0.16 -2.88 9.97 -39.47 -0.39 -3.28 16 24 C -0.18 -1.97 5.46 -26.50 -0.14 -2.11 16 25 C 0.07 0.74 6.70 37.30 0.25 0.99 16 26 O -0.38 -4.48 10.41 -35.23 -0.37 -4.84 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.12 1.73 5.47 -52.49 -0.29 1.44 16 33 H 0.13 2.72 7.65 -52.49 -0.40 2.32 16 34 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 35 H 0.14 2.60 6.22 -52.49 -0.33 2.27 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.99 6.99 -51.93 -0.36 0.63 16 39 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -32.45 327.71 -8.06 -40.51 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.35 Total: 3.77 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.82 Total: -16.07 kcal Atomic # 7 Polarization: -21.11 SS G_CDS: 0.65 Total: -20.46 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.45 Total: -26.77 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.45 -8.06 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.318 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds