Wall clock time and date at job start Tue Mar 31 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49045 * 2 1 4 4 C 1.53093 * 109.48128 * 239.97479 * 2 1 3 5 5 C 1.53178 * 109.16325 * 182.41225 * 4 2 1 6 6 H 1.09003 * 109.54291 * 176.93524 * 5 4 2 7 7 O 1.42902 * 109.53766 * 297.10886 * 5 4 2 8 8 C 1.35668 * 116.99675 * 204.79550 * 7 5 4 9 9 C 1.39164 * 119.90456 * 354.78460 * 8 7 5 10 10 C 1.37600 * 120.09031 * 180.02562 * 9 8 7 11 11 C 1.39943 * 119.90386 * 359.97438 * 10 9 8 12 12 C 1.47569 * 120.09214 * 179.97438 * 11 10 9 13 13 O 1.21826 * 119.99888 * 0.02562 * 12 11 10 14 14 C 1.41763 * 120.00181 * 179.72537 * 12 11 10 15 15 H 1.07998 * 119.99795 * 353.45900 * 14 12 11 16 16 C 1.40348 * 120.00206 * 173.46326 * 14 12 11 17 17 N 1.30533 * 119.99591 * 6.11409 * 16 14 12 18 18 Si 1.86790 * 120.00166 * 186.12031 * 16 14 12 19 19 H 1.48501 * 109.47451 * 94.97706 * 18 16 14 20 20 H 1.48501 * 109.47280 * 214.98203 * 18 16 14 21 21 H 1.48507 * 109.47149 * 334.98120 * 18 16 14 22 22 C 1.39953 * 119.81989 * 0.26246 * 11 10 9 23 23 C 1.37599 * 119.89570 * 359.46262 * 22 11 10 24 24 C 1.53173 * 109.11311 * 57.01992 * 5 4 2 25 25 C 1.53278 * 109.06273 * 303.06334 * 24 5 4 26 26 O 1.42897 * 109.46493 * 57.55481 * 25 24 5 27 27 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47506 * 300.02808 * 1 2 3 29 29 H 1.09004 * 109.47021 * 60.03281 * 1 2 3 30 30 H 1.09001 * 109.52778 * 62.49770 * 4 2 1 31 31 H 1.09007 * 109.57336 * 302.34031 * 4 2 1 32 32 H 1.07998 * 119.95439 * 359.97384 * 9 8 7 33 33 H 1.07992 * 120.04568 * 180.02562 * 10 9 8 34 34 H 0.96997 * 119.99576 * 180.02562 * 17 16 14 35 35 H 1.07993 * 120.05360 * 179.74618 * 22 11 10 36 36 H 1.08001 * 119.94732 * 180.30330 * 23 22 11 37 37 H 1.08998 * 109.52296 * 62.88160 * 24 5 4 38 38 H 1.09004 * 109.52261 * 183.07211 * 24 5 4 39 39 H 1.08997 * 109.45871 * 297.55153 * 25 24 5 40 40 H 1.09005 * 109.46971 * 177.55834 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7709 -1.2121 6 1 3.9393 -1.3313 -2.0715 7 8 4.0926 0.5591 -1.2497 8 6 5.3506 0.7138 -1.7336 9 6 6.1098 -0.4050 -2.0629 10 6 7.3863 -0.2524 -2.5536 11 6 7.9205 1.0301 -2.7217 12 6 9.2892 1.1985 -3.2471 13 8 9.9556 0.2203 -3.5355 14 6 9.8263 2.4987 -3.4221 15 1 9.2005 3.3661 -3.2724 16 6 11.1712 2.6588 -3.7901 17 7 11.8952 1.6141 -4.0872 18 14 11.9250 4.3666 -3.8544 19 1 12.6106 4.6538 -2.5688 20 1 12.9083 4.4322 -4.9653 21 1 10.8553 5.3717 -4.0801 22 6 7.1553 2.1524 -2.3846 23 6 5.8777 1.9910 -1.9000 24 6 4.0195 -1.4608 0.0798 25 6 3.4307 -0.7094 1.2790 26 8 2.0066 -0.6742 1.1664 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5142 0.8897 29 1 -0.3633 0.5133 -0.8903 30 1 1.7149 -0.1843 -2.1399 31 1 1.6444 -1.7375 -1.2721 32 1 5.6969 -1.3943 -1.9324 33 1 7.9747 -1.1211 -2.8093 34 1 12.8248 1.7247 -4.3411 35 1 7.5653 3.1437 -2.5090 36 1 5.2847 2.8566 -1.6442 37 1 3.6631 -2.4909 0.0853 38 1 5.1079 -1.4506 0.1394 39 1 3.8193 0.3089 1.2958 40 1 3.7100 -1.2201 2.2006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:47 Heat of formation + Delta-G solvation = -130.852308 kcal Electronic energy + Delta-G solvation = -22681.811962 eV Core-core repulsion = 19232.574636 eV Total energy + Delta-G solvation = -3449.237326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64767 -40.09339 -38.92290 -37.41141 -34.80494 -33.96566 -33.58288 -32.06118 -31.04267 -28.84226 -28.44385 -25.57199 -24.51300 -23.59910 -22.99089 -21.64701 -20.99879 -18.97938 -18.54429 -17.49858 -17.28675 -17.20547 -16.84210 -16.29863 -16.05998 -15.59622 -15.44956 -15.08614 -14.68549 -14.48502 -14.31888 -14.15545 -13.72999 -13.53143 -13.38332 -13.29812 -12.97244 -12.93063 -12.84733 -12.81419 -12.42277 -12.31685 -12.09874 -12.03730 -11.63366 -11.46300 -11.28645 -10.99695 -10.40986 -9.95135 -9.62698 -9.04651 -8.36366 -7.07660 0.21694 0.45780 1.38069 1.38434 1.55872 2.14098 2.20087 2.21565 2.82634 2.84175 3.58760 3.66580 3.72821 3.77440 3.89813 3.92506 3.96059 4.24148 4.25620 4.27858 4.45137 4.51817 4.52940 4.60915 4.64710 4.71976 4.76267 4.82377 4.93489 4.99214 5.01463 5.09619 5.18164 5.20273 5.32087 5.32434 5.44146 5.74274 5.80104 5.97961 6.27098 6.45519 6.69305 6.79445 8.23878 8.48020 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037281 B = 0.003100 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.875019 B = 9029.320865 C = 9356.051418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.053 0.947 4 C -0.137 4.137 5 C 0.071 3.929 6 H 0.084 0.916 7 O -0.308 6.308 8 C 0.132 3.868 9 C -0.210 4.210 10 C -0.067 4.067 11 C -0.180 4.180 12 C 0.364 3.636 13 O -0.602 6.602 14 C -0.544 4.544 15 H 0.097 0.903 16 C 0.022 3.978 17 N -0.789 5.789 18 Si 0.997 3.003 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.243 1.243 22 C -0.053 4.053 23 C -0.161 4.161 24 C -0.179 4.179 25 C 0.065 3.935 26 O -0.393 6.393 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.282 0.718 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.591 -0.833 7.812 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.071 0.929 4 C -0.175 4.175 5 C 0.015 3.985 6 H 0.102 0.898 7 O -0.222 6.222 8 C 0.086 3.914 9 C -0.228 4.228 10 C -0.086 4.086 11 C -0.181 4.181 12 C 0.265 3.735 13 O -0.497 6.497 14 C -0.575 4.575 15 H 0.115 0.885 16 C -0.197 4.197 17 N -0.418 5.418 18 Si 0.815 3.185 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.166 1.166 22 C -0.071 4.071 23 C -0.179 4.179 24 C -0.217 4.217 25 C -0.011 4.011 26 O -0.313 6.313 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.167 0.833 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.447 -1.351 7.842 21.941 hybrid contribution 1.233 0.216 -0.428 1.323 sum -19.214 -1.135 7.413 20.626 Atomic orbital electron populations 1.21779 0.91431 1.03366 1.03235 1.22178 0.96092 0.94983 0.84373 0.92890 1.22344 0.91287 1.03913 0.99932 1.22734 0.95405 0.81643 0.98743 0.89835 1.86025 1.26524 1.31249 1.78443 1.19175 0.84416 0.93885 0.93888 1.21251 0.95042 0.98986 1.07535 1.21117 0.94877 0.96750 0.95862 1.21454 0.98561 0.94316 1.03777 1.18814 0.85159 0.90369 0.79158 1.90437 1.62647 1.43559 1.53018 1.21465 0.97128 0.95227 1.43638 0.88532 1.27318 0.97680 1.03377 0.91312 1.70114 1.08435 1.34287 1.28989 0.85022 0.78653 0.75797 0.79062 1.18450 1.19324 1.16575 1.21388 0.92564 0.98797 0.94384 1.20580 0.95934 0.95682 1.05696 1.22774 1.02085 1.01463 0.95384 1.22519 0.80516 0.99685 0.98392 1.87889 1.21334 1.78143 1.43921 0.91359 0.91965 0.89518 0.89015 0.87586 0.83337 0.87458 0.90749 0.84106 0.82969 0.88025 0.90629 0.93828 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.56 71.98 0.69 -1.14 16 2 C 0.08 1.44 3.12 30.63 0.10 1.54 16 3 H 0.05 1.08 7.82 -2.39 -0.02 1.06 16 4 C -0.14 -2.20 5.14 30.68 0.16 -2.04 16 5 C 0.07 1.44 2.43 30.71 0.07 1.51 16 6 H 0.08 1.65 6.29 -2.39 -0.02 1.64 16 7 O -0.31 -8.05 8.75 -89.85 -0.79 -8.84 16 8 C 0.13 4.15 6.61 22.71 0.15 4.30 16 9 C -0.21 -7.03 8.22 22.34 0.18 -6.85 16 10 C -0.07 -2.93 9.59 22.53 0.22 -2.72 16 11 C -0.18 -8.73 5.89 -19.99 -0.12 -8.85 16 12 C 0.36 21.76 6.90 25.61 0.18 21.94 16 13 O -0.60 -40.97 14.92 -4.75 -0.07 -41.04 16 14 C -0.54 -30.58 8.83 23.66 0.21 -30.37 16 15 H 0.10 4.78 6.06 -2.91 -0.02 4.76 16 16 C 0.02 1.19 5.49 85.40 0.47 1.66 16 17 N -0.79 -47.23 11.76 21.89 0.26 -46.98 16 18 Si 1.00 39.23 29.57 68.60 2.03 41.26 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.24 -8.79 7.11 99.48 0.71 -8.08 16 22 C -0.05 -2.12 9.43 22.53 0.21 -1.91 16 23 C -0.16 -5.27 9.97 22.34 0.22 -5.05 16 24 C -0.18 -3.40 5.46 30.75 0.17 -3.24 16 25 C 0.07 1.30 6.70 72.08 0.48 1.78 16 26 O -0.39 -8.26 10.41 -148.98 -1.55 -9.81 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.15 4.01 5.47 -2.91 -0.02 4.00 16 33 H 0.11 4.96 7.65 -2.91 -0.02 4.94 16 34 H 0.28 15.03 8.29 -92.71 -0.77 14.26 16 35 H 0.14 5.32 6.22 -2.91 -0.02 5.30 16 36 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.60 6.99 -2.39 -0.02 1.58 16 39 H 0.04 0.98 7.82 -2.39 -0.02 0.96 16 40 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -74.81 327.71 4.32 -70.50 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 1.05 Total: 24.34 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.39 Total: -29.43 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.26 Total: -46.98 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -2.41 Total: -59.69 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -74.81 4.32 -70.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.355 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds