Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.48872 * 2 1 4 4 C 1.53096 * 109.47761 * 120.02116 * 2 1 3 5 5 C 1.53170 * 109.16159 * 177.59372 * 4 2 1 6 6 H 1.09006 * 109.54434 * 183.06672 * 5 4 2 7 7 O 1.42900 * 109.54555 * 62.88945 * 5 4 2 8 8 C 1.35656 * 117.00000 * 155.50545 * 7 5 4 9 9 C 1.39168 * 119.90837 * 5.09060 * 8 7 5 10 10 C 1.37596 * 120.09467 * 179.76782 * 9 8 7 11 11 C 1.39948 * 119.90258 * 0.52926 * 10 9 8 12 12 C 1.47565 * 120.09201 * 179.74795 * 11 10 9 13 13 O 1.21829 * 120.00222 * 179.97438 * 12 11 10 14 14 C 1.41757 * 120.00217 * 359.97438 * 12 11 10 15 15 H 1.07999 * 120.00000 * 0.02562 * 14 12 11 16 16 C 1.40342 * 120.00335 * 180.02562 * 14 12 11 17 17 N 1.30532 * 120.00302 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00154 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47009 * 59.99551 * 18 16 14 20 20 H 1.48505 * 109.47040 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46740 * 299.99755 * 18 16 14 22 22 C 1.39948 * 119.81619 * 359.72267 * 11 10 9 23 23 C 1.37590 * 119.90595 * 0.02562 * 22 11 10 24 24 C 1.53177 * 109.04651 * 303.02667 * 5 4 2 25 25 C 1.53092 * 109.16394 * 56.96486 * 24 5 4 26 26 O 1.42897 * 109.42404 * 302.41037 * 25 24 5 27 27 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47470 * 300.03695 * 1 2 3 29 29 H 1.09000 * 109.46814 * 60.03303 * 1 2 3 30 30 H 1.08995 * 109.52457 * 297.50120 * 4 2 1 31 31 H 1.09007 * 109.51862 * 57.68738 * 4 2 1 32 32 H 1.07996 * 119.95016 * 359.97438 * 9 8 7 33 33 H 1.07995 * 120.04593 * 180.27659 * 10 9 8 34 34 H 0.97001 * 120.00553 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.05085 * 179.97438 * 22 11 10 36 36 H 1.08002 * 119.95599 * 179.97438 * 23 22 11 37 37 H 1.09000 * 109.51889 * 297.06260 * 24 5 4 38 38 H 1.09001 * 109.53594 * 176.87542 * 24 5 4 39 39 H 1.09002 * 109.48419 * 182.41589 * 25 24 5 40 40 H 1.09001 * 109.47919 * 62.39635 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5710 -0.7707 1.2124 6 1 3.9391 -1.3311 2.0718 7 8 4.0926 0.5592 1.2499 8 6 5.3527 0.7132 1.7280 9 6 6.1128 -0.4060 2.0541 10 6 7.3931 -0.2544 2.5348 11 6 7.9267 1.0280 2.7062 12 6 9.2973 1.1957 3.2267 13 8 9.7603 2.3128 3.3748 14 6 10.0752 0.0569 3.5545 15 1 9.6650 -0.9335 3.4228 16 6 11.3785 0.2163 4.0500 17 7 11.8747 1.4132 4.2087 18 14 12.4039 -1.2845 4.4813 19 1 12.5806 -2.1275 3.2716 20 1 13.7335 -0.8490 4.9792 21 1 11.7129 -2.0698 5.5353 22 6 7.1570 2.1510 2.3820 23 6 5.8795 1.9902 1.8969 24 6 4.0178 -1.4599 -0.0806 25 6 3.4308 -0.7094 -1.2789 26 8 2.0067 -0.6742 -1.1663 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5144 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 1.7148 -0.1841 2.1399 31 1 1.6442 -1.7374 1.2711 32 1 5.6984 -1.3951 1.9264 33 1 7.9839 -1.1235 2.7834 34 1 12.7756 1.5234 4.5509 35 1 7.5648 3.1424 2.5131 36 1 5.2846 2.8563 1.6469 37 1 3.6618 -2.4901 -0.0860 38 1 5.1061 -1.4494 -0.1419 39 1 3.7101 -1.2204 -2.2003 40 1 3.8193 0.3089 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = -110.688793 kcal Electronic energy + Delta-G solvation = -22707.830368 eV Core-core repulsion = 19259.467397 eV Total energy + Delta-G solvation = -3448.362970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53613 -38.83793 -37.35110 -35.68866 -33.13210 -32.73419 -32.68356 -30.49706 -29.45089 -27.94527 -26.62752 -24.60985 -23.00207 -22.39150 -21.85861 -20.40623 -19.38085 -17.68372 -16.67743 -16.45820 -16.35156 -15.82383 -15.45445 -15.30420 -14.50129 -14.30763 -14.07177 -13.80107 -13.27668 -13.05720 -12.93280 -12.74292 -12.60743 -12.46725 -12.20752 -12.09807 -11.89416 -11.63221 -11.35010 -11.26779 -11.25706 -10.95941 -10.63455 -10.51710 -10.39080 -10.29333 -9.97848 -9.54560 -8.99505 -8.45338 -7.50894 -7.49546 -6.32981 -4.93619 1.81876 1.97233 3.04294 3.09980 3.11672 3.30031 3.60571 3.97791 3.99785 4.41726 4.53441 4.60411 4.64073 4.75260 5.02019 5.04685 5.24273 5.31819 5.36524 5.36972 5.40404 5.47459 5.51313 5.66440 5.72788 5.78793 5.81320 5.87115 5.92127 5.95810 6.05693 6.11022 6.30575 6.60405 6.81245 7.02014 7.08098 7.21682 7.32448 7.35482 7.80783 7.99664 8.76140 8.81501 10.28669 10.50679 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.003214 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.869311 B = 8709.905746 C = 9171.172717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.143 4.143 5 C 0.083 3.917 6 H 0.079 0.921 7 O -0.312 6.312 8 C 0.112 3.888 9 C -0.222 4.222 10 C -0.057 4.057 11 C -0.136 4.136 12 C 0.389 3.611 13 O -0.544 6.544 14 C -0.518 4.518 15 H 0.073 0.927 16 C 0.080 3.920 17 N -0.735 5.735 18 Si 0.906 3.094 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.056 4.056 23 C -0.163 4.163 24 C -0.182 4.182 25 C 0.067 3.933 26 O -0.383 6.383 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.275 0.725 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 -6.658 -6.661 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.085 0.915 4 C -0.180 4.180 5 C 0.026 3.974 6 H 0.097 0.903 7 O -0.227 6.227 8 C 0.067 3.933 9 C -0.241 4.241 10 C -0.075 4.075 11 C -0.137 4.137 12 C 0.285 3.715 13 O -0.434 6.434 14 C -0.549 4.549 15 H 0.091 0.909 16 C -0.144 4.144 17 N -0.364 5.364 18 Si 0.730 3.270 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.074 4.074 23 C -0.182 4.182 24 C -0.220 4.220 25 C -0.010 4.010 26 O -0.302 6.302 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.568 -5.915 -6.758 19.730 hybrid contribution 0.779 -1.075 0.474 1.409 sum -16.789 -6.990 -6.284 19.241 Atomic orbital electron populations 1.21776 0.93174 1.02736 1.02494 1.22040 0.94683 0.95791 0.84550 0.91509 1.22316 0.93160 1.02684 0.99879 1.22366 0.93958 0.83023 0.98039 0.90343 1.85982 1.27976 1.29096 1.79630 1.19104 0.83698 0.94300 0.96156 1.21157 0.96809 0.97084 1.09055 1.21358 0.93345 0.97988 0.94790 1.21820 0.99835 0.92122 0.99957 1.18059 0.83430 0.90196 0.79815 1.90506 1.72258 1.27442 1.53159 1.20895 0.98694 0.95047 1.40267 0.90905 1.26007 0.98198 0.96577 0.93604 1.69946 1.14777 1.22978 1.28674 0.86439 0.78901 0.81913 0.79741 1.18896 1.20231 1.18898 1.21227 0.91844 0.99826 0.94534 1.20291 0.96780 0.94232 1.06891 1.22753 1.02716 1.00526 0.95985 1.22451 0.80633 1.00302 0.97580 1.87886 1.21201 1.78020 1.43120 0.91950 0.91064 0.91831 0.89917 0.89420 0.86231 0.85108 0.91404 0.85056 0.86140 0.89899 0.89681 0.88878 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.56 37.16 0.36 -0.79 16 2 C 0.09 0.89 3.12 -26.68 -0.08 0.81 16 3 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 4 C -0.14 -1.37 5.14 -26.59 -0.14 -1.51 16 5 C 0.08 0.95 2.44 -26.55 -0.06 0.89 16 6 H 0.08 0.89 6.30 -51.93 -0.33 0.56 16 7 O -0.31 -4.53 8.75 -18.67 -0.16 -4.69 16 8 C 0.11 1.88 6.61 -38.89 -0.26 1.63 16 9 C -0.22 -3.74 8.21 -39.47 -0.32 -4.06 16 10 C -0.06 -1.13 9.43 -39.18 -0.37 -1.49 16 11 C -0.14 -3.18 5.89 -104.81 -0.62 -3.80 16 12 C 0.39 10.99 6.91 -34.44 -0.24 10.75 16 13 O -0.54 -17.29 14.89 5.07 0.08 -17.21 16 14 C -0.52 -14.12 8.86 -37.45 -0.33 -14.45 16 15 H 0.07 1.78 6.01 -52.49 -0.32 1.47 16 16 C 0.08 2.13 5.50 -17.31 -0.10 2.03 16 17 N -0.74 -21.10 11.73 55.57 0.65 -20.45 16 18 Si 0.91 19.06 29.56 -169.99 -5.03 14.03 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.06 -1.19 9.59 -39.18 -0.38 -1.56 16 23 C -0.16 -2.94 9.97 -39.47 -0.39 -3.34 16 24 C -0.18 -1.93 5.44 -26.59 -0.14 -2.08 16 25 C 0.07 0.73 6.69 37.21 0.25 0.98 16 26 O -0.38 -4.47 10.41 -35.23 -0.37 -4.83 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.12 1.66 5.47 -52.49 -0.29 1.37 16 33 H 0.13 2.50 6.19 -52.49 -0.33 2.17 16 34 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 35 H 0.13 2.83 7.65 -52.49 -0.40 2.43 16 36 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.97 6.98 -51.93 -0.36 0.60 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -32.41 327.59 -8.06 -40.48 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.35 Total: 3.74 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.83 Total: -16.00 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.65 Total: -20.45 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.45 Total: -26.74 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.41 -8.06 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.212 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds