Wall clock time and date at job start Tue Mar 31 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.48872 * 2 1 4 4 C 1.53096 * 109.47761 * 120.02116 * 2 1 3 5 5 C 1.53170 * 109.16159 * 177.59372 * 4 2 1 6 6 H 1.09006 * 109.54434 * 183.06672 * 5 4 2 7 7 O 1.42900 * 109.54555 * 62.88945 * 5 4 2 8 8 C 1.35656 * 117.00000 * 155.50545 * 7 5 4 9 9 C 1.39168 * 119.90837 * 5.09060 * 8 7 5 10 10 C 1.37596 * 120.09467 * 179.76782 * 9 8 7 11 11 C 1.39948 * 119.90258 * 0.52926 * 10 9 8 12 12 C 1.47565 * 120.09201 * 179.74795 * 11 10 9 13 13 O 1.21829 * 120.00222 * 179.97438 * 12 11 10 14 14 C 1.41757 * 120.00217 * 359.97438 * 12 11 10 15 15 H 1.07999 * 120.00000 * 0.02562 * 14 12 11 16 16 C 1.40342 * 120.00335 * 180.02562 * 14 12 11 17 17 N 1.30532 * 120.00302 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00154 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47009 * 59.99551 * 18 16 14 20 20 H 1.48505 * 109.47040 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46740 * 299.99755 * 18 16 14 22 22 C 1.39948 * 119.81619 * 359.72267 * 11 10 9 23 23 C 1.37590 * 119.90595 * 0.02562 * 22 11 10 24 24 C 1.53177 * 109.04651 * 303.02667 * 5 4 2 25 25 C 1.53092 * 109.16394 * 56.96486 * 24 5 4 26 26 O 1.42897 * 109.42404 * 302.41037 * 25 24 5 27 27 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47470 * 300.03695 * 1 2 3 29 29 H 1.09000 * 109.46814 * 60.03303 * 1 2 3 30 30 H 1.08995 * 109.52457 * 297.50120 * 4 2 1 31 31 H 1.09007 * 109.51862 * 57.68738 * 4 2 1 32 32 H 1.07996 * 119.95016 * 359.97438 * 9 8 7 33 33 H 1.07995 * 120.04593 * 180.27659 * 10 9 8 34 34 H 0.97001 * 120.00553 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.05085 * 179.97438 * 22 11 10 36 36 H 1.08002 * 119.95599 * 179.97438 * 23 22 11 37 37 H 1.09000 * 109.51889 * 297.06260 * 24 5 4 38 38 H 1.09001 * 109.53594 * 176.87542 * 24 5 4 39 39 H 1.09002 * 109.48419 * 182.41589 * 25 24 5 40 40 H 1.09001 * 109.47919 * 62.39635 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5710 -0.7707 1.2124 6 1 3.9391 -1.3311 2.0718 7 8 4.0926 0.5592 1.2499 8 6 5.3527 0.7132 1.7280 9 6 6.1128 -0.4060 2.0541 10 6 7.3931 -0.2544 2.5348 11 6 7.9267 1.0280 2.7062 12 6 9.2973 1.1957 3.2267 13 8 9.7603 2.3128 3.3748 14 6 10.0752 0.0569 3.5545 15 1 9.6650 -0.9335 3.4228 16 6 11.3785 0.2163 4.0500 17 7 11.8747 1.4132 4.2087 18 14 12.4039 -1.2845 4.4813 19 1 12.5806 -2.1275 3.2716 20 1 13.7335 -0.8490 4.9792 21 1 11.7129 -2.0698 5.5353 22 6 7.1570 2.1510 2.3820 23 6 5.8795 1.9902 1.8969 24 6 4.0178 -1.4599 -0.0806 25 6 3.4308 -0.7094 -1.2789 26 8 2.0067 -0.6742 -1.1663 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5144 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 1.7148 -0.1841 2.1399 31 1 1.6442 -1.7374 1.2711 32 1 5.6984 -1.3951 1.9264 33 1 7.9839 -1.1235 2.7834 34 1 12.7756 1.5234 4.5509 35 1 7.5648 3.1424 2.5131 36 1 5.2846 2.8563 1.6469 37 1 3.6618 -2.4901 -0.0860 38 1 5.1061 -1.4494 -0.1419 39 1 3.7101 -1.2204 -2.2003 40 1 3.8193 0.3089 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:49 Heat of formation + Delta-G solvation = -130.749756 kcal Electronic energy + Delta-G solvation = -22708.700277 eV Core-core repulsion = 19259.467397 eV Total energy + Delta-G solvation = -3449.232879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64311 -40.09149 -38.92157 -37.40452 -34.79262 -33.97209 -33.59736 -32.00249 -31.07079 -28.88036 -28.41072 -25.54804 -24.50488 -23.51689 -23.05192 -21.81883 -20.81280 -18.91449 -18.60814 -17.49409 -17.29722 -17.22854 -16.86281 -16.27710 -15.97351 -15.57795 -15.50494 -15.00631 -14.70784 -14.48019 -14.44946 -14.12147 -13.65537 -13.52037 -13.41291 -13.16301 -13.05748 -12.91953 -12.79564 -12.77852 -12.46290 -12.33196 -12.09117 -12.08898 -11.61834 -11.44603 -11.27549 -10.98169 -10.39934 -9.95405 -9.62636 -9.04170 -8.34836 -7.08362 0.21822 0.46030 1.37853 1.40409 1.53513 2.14558 2.20573 2.21321 2.83251 2.84564 3.60342 3.68776 3.74235 3.79464 3.91071 3.94778 3.98104 4.24853 4.26384 4.26922 4.45262 4.51987 4.54119 4.61533 4.66490 4.72651 4.77432 4.82504 4.94229 5.01608 5.02363 5.08234 5.18080 5.20404 5.31898 5.32676 5.44605 5.73747 5.80702 5.96267 6.27712 6.47246 6.68979 6.79944 8.24709 8.48719 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.003214 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.869311 B = 8709.905746 C = 9171.172717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.050 0.950 4 C -0.138 4.138 5 C 0.070 3.930 6 H 0.090 0.910 7 O -0.312 6.312 8 C 0.133 3.867 9 C -0.209 4.209 10 C -0.053 4.053 11 C -0.180 4.180 12 C 0.364 3.636 13 O -0.602 6.602 14 C -0.544 4.544 15 H 0.097 0.903 16 C 0.021 3.979 17 N -0.789 5.789 18 Si 0.997 3.003 19 H -0.250 1.250 20 H -0.271 1.271 21 H -0.250 1.250 22 C -0.067 4.067 23 C -0.163 4.163 24 C -0.179 4.179 25 C 0.064 3.936 26 O -0.394 6.394 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.158 0.842 33 H 0.138 0.862 34 H 0.282 0.718 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.661 -10.023 -6.983 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.023 3.977 3 H 0.068 0.932 4 C -0.175 4.175 5 C 0.015 3.985 6 H 0.107 0.893 7 O -0.226 6.226 8 C 0.088 3.912 9 C -0.227 4.227 10 C -0.071 4.071 11 C -0.181 4.181 12 C 0.264 3.736 13 O -0.497 6.497 14 C -0.574 4.574 15 H 0.115 0.885 16 C -0.198 4.198 17 N -0.418 5.418 18 Si 0.815 3.185 19 H -0.174 1.174 20 H -0.195 1.195 21 H -0.173 1.173 22 C -0.085 4.085 23 C -0.182 4.182 24 C -0.216 4.216 25 C -0.013 4.013 26 O -0.313 6.313 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.176 0.824 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.160 0.840 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.635 -9.297 -7.095 22.854 hybrid contribution 1.198 -0.017 0.480 1.291 sum -18.437 -9.314 -6.615 21.689 Atomic orbital electron populations 1.21777 0.91476 1.03414 1.03148 1.22170 0.96076 0.94894 0.84548 0.93233 1.22346 0.91515 1.03948 0.99719 1.22769 0.95272 0.81511 0.98988 0.89261 1.86024 1.26344 1.31556 1.78665 1.19127 0.84496 0.93739 0.93879 1.21410 0.95247 0.98872 1.07185 1.21386 0.94641 0.96494 0.94620 1.21453 0.98400 0.94528 1.03746 1.18813 0.85702 0.89827 0.79222 1.90443 1.74203 1.29175 1.55840 1.21435 0.99621 0.95892 1.40464 0.88525 1.27326 0.99462 1.00429 0.92538 1.70108 1.15682 1.26337 1.29694 0.85086 0.76627 0.76729 0.80094 1.17368 1.19540 1.17336 1.21107 0.93222 0.98525 0.95684 1.20395 0.95573 0.96022 1.06202 1.22747 1.02311 1.01483 0.95083 1.22505 0.80494 0.99613 0.98659 1.87885 1.21426 1.78088 1.43921 0.91209 0.89607 0.92082 0.89166 0.87348 0.82424 0.84450 0.90751 0.87073 0.83962 0.87744 0.90253 0.87427 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.56 71.98 0.69 -1.17 16 2 C 0.08 1.44 3.12 30.63 0.10 1.54 16 3 H 0.05 1.05 7.82 -2.39 -0.02 1.03 16 4 C -0.14 -2.14 5.14 30.68 0.16 -1.98 16 5 C 0.07 1.36 2.44 30.71 0.07 1.43 16 6 H 0.09 1.59 6.30 -2.38 -0.02 1.57 16 7 O -0.31 -8.16 8.75 -89.72 -0.78 -8.95 16 8 C 0.13 4.19 6.61 22.72 0.15 4.34 16 9 C -0.21 -6.46 8.21 22.34 0.18 -6.28 16 10 C -0.05 -2.08 9.43 22.53 0.21 -1.87 16 11 C -0.18 -8.74 5.89 -19.99 -0.12 -8.86 16 12 C 0.36 21.73 6.91 25.60 0.18 21.91 16 13 O -0.60 -41.11 14.89 -4.76 -0.07 -41.18 16 14 C -0.54 -30.43 8.86 23.65 0.21 -30.22 16 15 H 0.10 4.72 6.01 -2.91 -0.02 4.71 16 16 C 0.02 1.15 5.50 85.40 0.47 1.62 16 17 N -0.79 -47.26 11.73 21.89 0.26 -47.00 16 18 Si 1.00 38.94 29.56 68.60 2.03 40.97 16 19 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 22 C -0.07 -2.96 9.59 22.53 0.22 -2.74 16 23 C -0.16 -5.81 9.97 22.34 0.22 -5.59 16 24 C -0.18 -3.15 5.44 30.68 0.17 -2.98 16 25 C 0.06 1.24 6.69 72.01 0.48 1.72 16 26 O -0.39 -8.22 10.41 -148.98 -1.55 -9.77 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.16 3.66 5.47 -2.91 -0.02 3.64 16 33 H 0.14 5.07 6.19 -2.91 -0.02 5.05 16 34 H 0.28 15.09 8.29 -92.71 -0.77 14.32 16 35 H 0.11 5.23 7.65 -2.91 -0.02 5.20 16 36 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.52 6.98 -2.39 -0.02 1.50 16 39 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 0.91 7.82 -2.39 -0.02 0.89 16 Total: -1.00 -75.25 327.59 4.32 -70.93 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 1.05 Total: 24.12 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 3.39 Total: -29.12 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.26 Total: -47.00 kcal Atomic # 8 Polarization: -57.49 SS G_CDS: -2.41 Total: -59.89 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -75.25 4.32 -70.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.822 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds