Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50710 * 109.46836 * 2 1 4 4 O 1.20761 * 120.00013 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99700 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47385 * 319.99274 * 5 3 2 7 7 C 1.52998 * 109.47485 * 79.99805 * 5 3 2 8 8 C 1.53000 * 109.47186 * 184.99667 * 7 5 3 9 9 O 1.42907 * 109.46709 * 200.00085 * 5 3 2 10 10 C 1.35633 * 116.99926 * 140.43033 * 9 5 3 11 11 C 1.38667 * 120.16240 * 5.66009 * 10 9 5 12 12 C 1.38093 * 120.08916 * 179.74643 * 11 10 9 13 13 C 1.38683 * 120.41498 * 0.56516 * 12 11 10 14 14 C 1.37698 * 120.32626 * 359.69781 * 13 12 11 15 15 C 1.39846 * 119.89742 * 0.02562 * 14 13 12 16 16 C 1.47532 * 120.20325 * 180.02562 * 15 14 13 17 17 O 1.21814 * 119.99993 * 179.97438 * 16 15 14 18 18 C 1.41831 * 120.00243 * 359.97438 * 16 15 14 19 19 H 1.08004 * 119.99985 * 0.02562 * 18 16 15 20 20 C 1.40318 * 120.00372 * 179.97438 * 18 16 15 21 21 N 1.30541 * 119.99679 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00205 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47250 * 120.00413 * 22 20 18 25 25 H 1.48501 * 109.47647 * 240.00229 * 22 20 18 26 26 H 1.09003 * 109.47493 * 299.99995 * 1 2 3 27 27 H 1.09004 * 109.47385 * 60.00114 * 1 2 3 28 28 H 1.09004 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47423 * 119.99898 * 2 1 3 30 30 H 1.08998 * 109.47160 * 240.00644 * 2 1 3 31 31 H 1.09004 * 109.47006 * 304.99702 * 7 5 3 32 32 H 1.09001 * 109.46939 * 64.99950 * 7 5 3 33 33 H 1.09001 * 109.46950 * 60.00290 * 8 7 5 34 34 H 1.09002 * 109.47061 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47313 * 300.00468 * 8 7 5 36 36 H 1.08004 * 119.95728 * 0.03313 * 11 10 9 37 37 H 1.08002 * 119.78992 * 180.30538 * 12 11 10 38 38 H 1.08009 * 119.83708 * 179.72074 * 13 12 11 39 39 H 1.08001 * 120.05041 * 180.02562 * 14 13 12 40 40 H 0.97005 * 120.00032 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2474 2.3388 -0.0005 5 6 3.5138 1.6963 -0.0006 6 1 4.0152 0.9887 0.6598 7 6 4.0605 1.5434 -1.4214 8 6 5.5823 1.7001 -1.4019 9 8 3.7509 3.0280 0.4604 10 6 4.8183 3.2166 1.2757 11 6 5.6912 2.1705 1.5338 12 6 6.7804 2.3655 2.3601 13 6 7.0041 3.6021 2.9468 14 6 6.1452 4.6512 2.7065 15 6 5.0412 4.4701 1.8674 16 6 4.1169 5.5897 1.6050 17 8 3.1567 5.4280 0.8731 18 6 4.3464 6.8543 2.2048 19 1 5.1980 6.9978 2.8533 20 6 3.4676 7.9193 1.9547 21 7 2.4386 7.7460 1.1704 22 14 3.7695 9.5846 2.7452 23 1 4.9929 9.5197 3.5845 24 1 3.9500 10.6099 1.6862 25 1 2.6058 9.9484 3.5931 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.8017 0.5569 -1.8060 32 1 3.6246 2.3094 -2.0627 33 1 6.0183 0.9341 -0.7605 34 1 5.9718 1.5907 -2.4140 35 1 5.8412 2.6866 -1.0171 36 1 5.5217 1.2032 1.0844 37 1 7.4599 1.5488 2.5538 38 1 7.8564 3.7430 3.5950 39 1 6.3239 5.6124 3.1654 40 1 1.8309 8.4821 0.9978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -90.846686 kcal Electronic energy + Delta-G solvation = -23499.720411 eV Core-core repulsion = 20052.217859 eV Total energy + Delta-G solvation = -3447.502552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27894 -38.86611 -36.92446 -35.91525 -33.63296 -32.65470 -32.47622 -30.51301 -29.47108 -27.78735 -26.57506 -24.12590 -23.04067 -22.38677 -20.96849 -19.86499 -19.01995 -17.73127 -16.47893 -16.28252 -15.62601 -15.52799 -15.07111 -14.87054 -14.48456 -14.37860 -13.81451 -13.48072 -13.22186 -13.03234 -12.71445 -12.52523 -12.40236 -12.05393 -11.89743 -11.77698 -11.62446 -11.40674 -11.35843 -11.22358 -11.16041 -10.98777 -10.85465 -10.57443 -10.31491 -10.13894 -9.99979 -9.21790 -8.87996 -8.17665 -7.40907 -7.25459 -6.14395 -4.75332 1.81881 2.04497 2.18003 3.10591 3.19141 3.23408 3.42727 4.09521 4.11410 4.28593 4.71167 4.84099 4.88218 4.91838 5.06335 5.12076 5.25519 5.33670 5.40297 5.46217 5.65201 5.67864 5.72589 5.77357 5.87301 5.92302 5.94392 5.95311 6.15459 6.16317 6.23386 6.31473 6.38189 6.69994 6.92701 6.94914 7.18034 7.36632 7.47451 7.76024 8.13213 8.14813 8.92665 8.97857 10.47048 10.71014 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.005596 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.408175 B = 5002.313373 C = 6283.980338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.340 3.660 4 O -0.403 6.403 5 C 0.024 3.976 6 H 0.095 0.905 7 C -0.132 4.132 8 C -0.154 4.154 9 O -0.242 6.242 10 C 0.147 3.853 11 C -0.232 4.232 12 C -0.093 4.093 13 C -0.175 4.175 14 C -0.059 4.059 15 C -0.133 4.133 16 C 0.386 3.614 17 O -0.508 6.508 18 C -0.523 4.523 19 H 0.071 0.929 20 C 0.080 3.920 21 N -0.736 5.736 22 Si 0.903 3.097 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -15.193 -1.270 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.210 3.790 4 O -0.271 6.271 5 C -0.034 4.034 6 H 0.113 0.887 7 C -0.170 4.170 8 C -0.211 4.211 9 O -0.154 6.154 10 C 0.100 3.900 11 C -0.251 4.251 12 C -0.112 4.112 13 C -0.193 4.193 14 C -0.077 4.077 15 C -0.135 4.135 16 C 0.279 3.721 17 O -0.395 6.395 18 C -0.555 4.555 19 H 0.090 0.910 20 C -0.142 4.142 21 N -0.365 5.365 22 Si 0.727 3.273 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.670 -14.591 -1.812 15.154 hybrid contribution 0.613 0.461 0.547 0.942 sum 4.283 -14.130 -1.265 14.819 Atomic orbital electron populations 1.21597 0.93570 1.01579 1.03481 1.22022 0.98484 0.95583 1.04412 1.24663 0.90028 0.91190 0.73114 1.90524 1.57958 1.47314 1.31309 1.23021 0.95891 0.86958 0.97544 0.88703 1.21859 0.97386 1.02701 0.95029 1.21898 0.94424 1.03010 1.01780 1.86653 1.43512 1.24932 1.60257 1.19471 0.86656 0.93847 0.90007 1.21145 0.98877 0.98661 1.06373 1.20781 0.96611 0.96984 0.96789 1.20953 1.01131 0.93775 1.03468 1.21420 0.92232 0.98801 0.95245 1.21620 0.99116 0.94935 0.97849 1.18038 0.84435 0.85785 0.83814 1.90612 1.29001 1.83826 1.36026 1.20914 1.10520 0.96083 1.27937 0.91037 1.25956 0.94059 1.00342 0.93880 1.69997 1.09225 1.31766 1.25536 0.86385 0.79333 0.81914 0.79664 1.18470 1.19968 1.19967 0.91912 0.91984 0.92114 0.88597 0.88527 0.90549 0.90173 0.92532 0.92362 0.91484 0.85943 0.86921 0.86785 0.84756 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.20 37.15 0.34 -1.25 16 2 C -0.17 -1.77 6.36 -27.88 -0.18 -1.94 16 3 C 0.34 5.54 6.42 -29.03 -0.19 5.36 16 4 O -0.40 -8.86 16.24 -13.12 -0.21 -9.08 16 5 C 0.02 0.39 2.46 -27.89 -0.07 0.32 16 6 H 0.10 1.26 5.42 -51.93 -0.28 0.97 16 7 C -0.13 -1.78 5.62 -26.73 -0.15 -1.93 16 8 C -0.15 -1.99 8.49 37.16 0.32 -1.67 16 9 O -0.24 -5.55 7.27 -48.58 -0.35 -5.90 16 10 C 0.15 3.20 5.67 -38.61 -0.22 2.98 16 11 C -0.23 -3.91 7.37 -39.48 -0.29 -4.20 16 12 C -0.09 -1.45 10.04 -39.47 -0.40 -1.84 16 13 C -0.17 -2.92 10.02 -39.61 -0.40 -3.32 16 14 C -0.06 -1.20 9.43 -39.18 -0.37 -1.57 16 15 C -0.13 -3.27 5.90 -104.69 -0.62 -3.89 16 16 C 0.39 11.49 6.91 -34.42 -0.24 11.25 16 17 O -0.51 -17.08 13.71 -16.75 -0.23 -17.31 16 18 C -0.52 -14.91 8.86 -37.43 -0.33 -15.24 16 19 H 0.07 1.84 6.02 -52.48 -0.32 1.52 16 20 C 0.08 2.25 5.50 -17.32 -0.10 2.15 16 21 N -0.74 -22.24 11.73 55.56 0.65 -21.59 16 22 Si 0.90 19.99 29.56 -169.99 -5.02 14.96 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 27 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.74 8.04 -51.93 -0.42 0.33 16 31 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.62 6.74 -51.93 -0.35 0.27 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.09 6.54 -51.93 -0.34 0.75 16 36 H 0.12 1.66 4.28 -52.48 -0.22 1.44 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.13 2.65 6.20 -52.49 -0.33 2.32 16 40 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -37.50 332.56 -8.22 -45.72 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.18 Total: 2.97 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.88 Total: -14.79 kcal Atomic # 7 Polarization: -22.24 SS G_CDS: 0.65 Total: -21.59 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.80 Total: -32.29 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.50 -8.22 -45.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.126 kcal (2) G-P(sol) polarization free energy of solvation -37.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds