Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50710 * 109.46836 * 2 1 4 4 O 1.20761 * 120.00013 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99700 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47385 * 319.99274 * 5 3 2 7 7 C 1.52998 * 109.47485 * 79.99805 * 5 3 2 8 8 C 1.53000 * 109.47186 * 184.99667 * 7 5 3 9 9 O 1.42907 * 109.46709 * 200.00085 * 5 3 2 10 10 C 1.35633 * 116.99926 * 140.43033 * 9 5 3 11 11 C 1.38667 * 120.16240 * 5.66009 * 10 9 5 12 12 C 1.38093 * 120.08916 * 179.74643 * 11 10 9 13 13 C 1.38683 * 120.41498 * 0.56516 * 12 11 10 14 14 C 1.37698 * 120.32626 * 359.69781 * 13 12 11 15 15 C 1.39846 * 119.89742 * 0.02562 * 14 13 12 16 16 C 1.47532 * 120.20325 * 180.02562 * 15 14 13 17 17 O 1.21814 * 119.99993 * 179.97438 * 16 15 14 18 18 C 1.41831 * 120.00243 * 359.97438 * 16 15 14 19 19 H 1.08004 * 119.99985 * 0.02562 * 18 16 15 20 20 C 1.40318 * 120.00372 * 179.97438 * 18 16 15 21 21 N 1.30541 * 119.99679 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00205 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47250 * 120.00413 * 22 20 18 25 25 H 1.48501 * 109.47647 * 240.00229 * 22 20 18 26 26 H 1.09003 * 109.47493 * 299.99995 * 1 2 3 27 27 H 1.09004 * 109.47385 * 60.00114 * 1 2 3 28 28 H 1.09004 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47423 * 119.99898 * 2 1 3 30 30 H 1.08998 * 109.47160 * 240.00644 * 2 1 3 31 31 H 1.09004 * 109.47006 * 304.99702 * 7 5 3 32 32 H 1.09001 * 109.46939 * 64.99950 * 7 5 3 33 33 H 1.09001 * 109.46950 * 60.00290 * 8 7 5 34 34 H 1.09002 * 109.47061 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47313 * 300.00468 * 8 7 5 36 36 H 1.08004 * 119.95728 * 0.03313 * 11 10 9 37 37 H 1.08002 * 119.78992 * 180.30538 * 12 11 10 38 38 H 1.08009 * 119.83708 * 179.72074 * 13 12 11 39 39 H 1.08001 * 120.05041 * 180.02562 * 14 13 12 40 40 H 0.97005 * 120.00032 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2474 2.3388 -0.0005 5 6 3.5138 1.6963 -0.0006 6 1 4.0152 0.9887 0.6598 7 6 4.0605 1.5434 -1.4214 8 6 5.5823 1.7001 -1.4019 9 8 3.7509 3.0280 0.4604 10 6 4.8183 3.2166 1.2757 11 6 5.6912 2.1705 1.5338 12 6 6.7804 2.3655 2.3601 13 6 7.0041 3.6021 2.9468 14 6 6.1452 4.6512 2.7065 15 6 5.0412 4.4701 1.8674 16 6 4.1169 5.5897 1.6050 17 8 3.1567 5.4280 0.8731 18 6 4.3464 6.8543 2.2048 19 1 5.1980 6.9978 2.8533 20 6 3.4676 7.9193 1.9547 21 7 2.4386 7.7460 1.1704 22 14 3.7695 9.5846 2.7452 23 1 4.9929 9.5197 3.5845 24 1 3.9500 10.6099 1.6862 25 1 2.6058 9.9484 3.5931 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.8017 0.5569 -1.8060 32 1 3.6246 2.3094 -2.0627 33 1 6.0183 0.9341 -0.7605 34 1 5.9718 1.5907 -2.4140 35 1 5.8412 2.6866 -1.0171 36 1 5.5217 1.2032 1.0844 37 1 7.4599 1.5488 2.5538 38 1 7.8564 3.7430 3.5950 39 1 6.3239 5.6124 3.1654 40 1 1.8309 8.4821 0.9978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = -115.543738 kcal Electronic energy + Delta-G solvation = -23500.791356 eV Core-core repulsion = 20052.217859 eV Total energy + Delta-G solvation = -3448.573497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67482 -40.31405 -38.61902 -37.77969 -34.91438 -34.63706 -33.59937 -32.12019 -30.88266 -29.09228 -28.57853 -25.15361 -24.61815 -23.77928 -22.20746 -21.62044 -20.32869 -19.20442 -18.42114 -17.59007 -17.36472 -16.84257 -16.52977 -16.09193 -16.02029 -15.67439 -15.32786 -14.99349 -14.68422 -14.53320 -14.36869 -14.01582 -13.56767 -13.29111 -13.26762 -13.19636 -13.02613 -12.90072 -12.70919 -12.64095 -12.62090 -12.25047 -12.10132 -12.06484 -11.96498 -11.82833 -11.41888 -11.00299 -10.48745 -9.69360 -9.45020 -8.92517 -8.27025 -7.01990 0.28945 0.61956 0.92910 1.33540 1.35002 1.53233 2.19766 2.20118 2.30431 2.92652 3.06602 3.69046 3.76299 3.83968 3.90376 4.02593 4.09199 4.21940 4.24158 4.27874 4.35123 4.46207 4.58902 4.64678 4.72187 4.79389 4.88559 4.94649 4.97524 5.01025 5.11484 5.18812 5.23004 5.28386 5.32313 5.43892 5.56807 5.73804 5.95820 6.07906 6.50940 6.71847 6.73947 6.92868 8.35437 8.57744 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.005596 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.408175 B = 5002.313373 C = 6283.980338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.337 3.663 4 O -0.483 6.483 5 C 0.008 3.992 6 H 0.134 0.866 7 C -0.127 4.127 8 C -0.150 4.150 9 O -0.296 6.296 10 C 0.131 3.869 11 C -0.221 4.221 12 C -0.068 4.068 13 C -0.169 4.169 14 C -0.065 4.065 15 C -0.200 4.200 16 C 0.361 3.639 17 O -0.571 6.571 18 C -0.554 4.554 19 H 0.092 0.908 20 C 0.019 3.981 21 N -0.797 5.797 22 Si 0.997 3.003 23 H -0.240 1.240 24 H -0.265 1.265 25 H -0.266 1.266 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.022 0.978 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.156 0.844 39 H 0.129 0.871 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.344 -18.723 0.063 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.213 3.787 4 O -0.356 6.356 5 C -0.049 4.049 6 H 0.151 0.849 7 C -0.165 4.165 8 C -0.207 4.207 9 O -0.209 6.209 10 C 0.085 3.915 11 C -0.239 4.239 12 C -0.086 4.086 13 C -0.187 4.187 14 C -0.083 4.083 15 C -0.202 4.202 16 C 0.258 3.742 17 O -0.463 6.463 18 C -0.585 4.585 19 H 0.110 0.890 20 C -0.198 4.198 21 N -0.427 5.427 22 Si 0.815 3.185 23 H -0.163 1.163 24 H -0.190 1.190 25 H -0.191 1.191 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.174 0.826 39 H 0.146 0.854 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.170 -18.162 -0.466 19.531 hybrid contribution -0.384 1.378 0.106 1.434 sum 6.786 -16.784 -0.360 18.107 Atomic orbital electron populations 1.21641 0.94416 1.03161 1.01315 1.22138 0.97711 0.91420 1.07922 1.25769 0.89843 0.93195 0.69936 1.90516 1.59561 1.50166 1.35382 1.23603 0.96542 0.85177 0.99605 0.84898 1.21909 0.97660 1.04170 0.92739 1.21877 0.93893 1.01448 1.03450 1.86599 1.44460 1.29055 1.60780 1.19713 0.87546 0.94322 0.89951 1.21519 0.97850 0.98605 1.05953 1.21465 0.95776 0.97753 0.93573 1.21375 1.00988 0.92979 1.03323 1.21449 0.91976 1.00205 0.94667 1.21250 1.00977 0.95205 1.02739 1.18864 0.84508 0.88158 0.82621 1.90548 1.31747 1.85406 1.38551 1.21463 1.11638 0.96749 1.28622 0.88963 1.27325 0.93007 1.05619 0.93845 1.70191 1.10924 1.33794 1.27784 0.85003 0.80049 0.74770 0.78703 1.16264 1.18960 1.19083 0.94648 0.93880 0.88360 0.85135 0.84138 0.85328 0.94110 0.89281 0.90496 0.95862 0.81991 0.81252 0.82643 0.85368 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.20 71.98 0.66 -2.48 16 2 C -0.16 -2.84 6.36 29.85 0.19 -2.65 16 3 C 0.34 11.24 6.42 29.10 0.19 11.42 16 4 O -0.48 -23.32 16.24 16.83 0.27 -23.04 16 5 C 0.01 0.24 2.46 29.85 0.07 0.32 16 6 H 0.13 3.05 5.42 -2.39 -0.01 3.04 16 7 C -0.13 -3.27 5.62 30.59 0.17 -3.10 16 8 C -0.15 -3.52 8.49 71.98 0.61 -2.91 16 9 O -0.30 -14.47 7.27 -60.80 -0.44 -14.91 16 10 C 0.13 5.88 5.67 22.90 0.13 6.01 16 11 C -0.22 -6.75 7.37 22.34 0.16 -6.58 16 12 C -0.07 -1.74 10.04 22.34 0.22 -1.51 16 13 C -0.17 -5.03 10.02 22.25 0.22 -4.81 16 14 C -0.06 -2.67 9.43 22.53 0.21 -2.46 16 15 C -0.20 -10.39 5.90 -19.91 -0.12 -10.51 16 16 C 0.36 23.43 6.91 25.61 0.18 23.61 16 17 O -0.57 -42.51 13.71 16.16 0.22 -42.28 16 18 C -0.55 -33.71 8.86 23.67 0.21 -33.50 16 19 H 0.09 4.98 6.02 -2.91 -0.02 4.96 16 20 C 0.02 1.14 5.50 85.39 0.47 1.61 16 21 N -0.80 -52.03 11.73 21.88 0.26 -51.78 16 22 Si 1.00 42.67 29.56 68.60 2.03 44.70 16 23 H -0.24 -9.34 7.11 99.48 0.71 -8.64 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H 0.03 0.92 8.10 -2.39 -0.02 0.90 16 27 H 0.04 1.06 8.10 -2.38 -0.02 1.04 16 28 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.14 1.42 8.04 -2.39 -0.02 1.40 16 31 H 0.13 1.91 8.04 -2.39 -0.02 1.89 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.48 6.74 -2.39 -0.02 1.46 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.02 0.74 6.54 -2.39 -0.02 0.73 16 36 H 0.16 3.49 4.28 -2.91 -0.01 3.48 16 37 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.13 5.20 6.20 -2.91 -0.02 5.18 16 40 H 0.28 16.24 8.29 -92.70 -0.77 15.48 16 Total: -1.00 -99.72 332.56 6.98 -92.74 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 1.06 Total: 22.12 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 3.59 Total: -27.53 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.26 Total: -51.78 kcal Atomic # 8 Polarization: -80.29 SS G_CDS: 0.05 Total: -80.24 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -99.72 6.98 -92.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.809 kcal (2) G-P(sol) polarization free energy of solvation -99.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds