Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.20755 * 120.00072 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99562 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47378 * 45.00207 * 5 3 2 7 7 C 1.53006 * 109.47352 * 285.00009 * 5 3 2 8 8 C 1.52998 * 109.47215 * 175.00536 * 7 5 3 9 9 O 1.42908 * 109.46817 * 165.00353 * 5 3 2 10 10 C 1.35653 * 116.99739 * 218.83518 * 9 5 3 11 11 C 1.39165 * 119.90624 * 354.37485 * 10 9 5 12 12 C 1.37125 * 120.09304 * 179.97438 * 11 10 9 13 13 C 1.39949 * 119.90242 * 0.02562 * 12 11 10 14 14 C 1.47570 * 120.09146 * 180.02562 * 13 12 11 15 15 O 1.21821 * 120.00106 * 359.97438 * 14 13 12 16 16 C 1.41765 * 120.00196 * 180.02562 * 14 13 12 17 17 H 1.07996 * 119.99775 * 354.44058 * 16 14 13 18 18 C 1.40345 * 120.00314 * 174.44096 * 16 14 13 19 19 N 1.30532 * 119.99876 * 5.32980 * 18 16 14 20 20 Si 1.86795 * 120.00304 * 185.32798 * 18 16 14 21 21 H 1.48498 * 109.47146 * 94.99362 * 20 18 16 22 22 H 1.48504 * 109.47197 * 215.00201 * 20 18 16 23 23 H 1.48506 * 109.46974 * 334.99652 * 20 18 16 24 24 C 1.39944 * 119.81734 * 0.27344 * 13 12 11 25 25 C 1.37120 * 119.90336 * 359.44830 * 24 13 12 26 26 H 1.08999 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46610 * 299.99663 * 1 2 3 28 28 H 1.08997 * 109.47288 * 59.99681 * 1 2 3 29 29 H 1.09005 * 109.46671 * 239.99854 * 2 1 3 30 30 H 1.09006 * 109.46824 * 120.00707 * 2 1 3 31 31 H 1.08997 * 109.47191 * 295.00517 * 7 5 3 32 32 H 1.09000 * 109.46633 * 55.00232 * 7 5 3 33 33 H 1.09001 * 109.47161 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46621 * 299.99965 * 8 7 5 35 35 H 1.09000 * 109.47301 * 59.99791 * 8 7 5 36 36 H 1.07993 * 119.95680 * 0.02562 * 11 10 9 37 37 H 1.07995 * 120.05030 * 179.97438 * 12 11 10 38 38 H 0.97001 * 120.00406 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.05168 * 179.70233 * 24 13 12 40 40 H 1.07999 * 119.95931 * 180.27386 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2477 2.3386 0.0005 5 6 3.5140 1.6961 -0.0006 6 1 4.0037 1.0481 -0.7276 7 6 4.0843 1.4220 1.3925 8 6 5.6057 1.5808 1.3611 9 8 3.7444 3.0627 -0.3491 10 6 4.8074 3.3230 -1.1507 11 6 5.6819 2.2978 -1.4982 12 6 6.7573 2.5565 -2.3087 13 6 6.9750 3.8539 -2.7860 14 6 8.1307 4.1369 -3.6590 15 8 8.8971 3.2406 -3.9646 16 6 8.3497 5.4520 -4.1410 17 1 7.6238 6.2270 -3.9444 18 6 9.5099 5.7467 -4.8737 19 7 10.3358 4.7903 -5.2008 20 14 9.8722 7.5076 -5.3808 21 1 10.7717 8.1358 -4.3801 22 1 10.5310 7.5139 -6.7117 23 1 8.6017 8.2730 -5.4539 24 6 6.0967 4.8832 -2.4291 25 6 5.0205 4.6147 -1.6228 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 3.6598 2.1296 2.1046 32 1 3.8312 0.4059 1.6952 33 1 6.0120 1.3851 2.3535 34 1 6.0302 0.8730 0.6490 35 1 5.8588 2.5968 1.0584 36 1 5.5129 1.2968 -1.1297 37 1 7.4358 1.7604 -2.5775 38 1 11.1375 4.9938 -5.7075 39 1 6.2638 5.8868 -2.7914 40 1 4.3396 5.4075 -1.3504 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = -99.040806 kcal Electronic energy + Delta-G solvation = -22530.460764 eV Core-core repulsion = 19082.602889 eV Total energy + Delta-G solvation = -3447.857876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65936 -39.17224 -37.52528 -35.75929 -34.01282 -32.93222 -32.69871 -30.58301 -29.75988 -28.16207 -26.60283 -24.45598 -23.01186 -22.52948 -21.41967 -19.71466 -19.43454 -18.20853 -16.92850 -16.40693 -15.96863 -15.72647 -15.34680 -15.18982 -14.82177 -14.25596 -13.95348 -13.64086 -13.37863 -13.11956 -12.87703 -12.72052 -12.70062 -12.37957 -12.26099 -12.14988 -11.94431 -11.74575 -11.60444 -11.47386 -11.21432 -11.17761 -11.05919 -10.55442 -10.41949 -10.34887 -9.93305 -9.63388 -8.98702 -8.47301 -7.49996 -7.47303 -6.33145 -4.91928 1.67449 1.80911 1.99610 2.98283 3.04126 3.12332 3.15855 3.89833 3.98760 4.01666 4.53223 4.54028 4.62896 4.65330 4.76302 4.83791 5.01067 5.18669 5.29572 5.31318 5.42655 5.47242 5.49321 5.58865 5.74002 5.78789 5.83164 5.85805 5.90385 6.05762 6.11349 6.18771 6.28676 6.61775 6.81366 7.01825 7.18165 7.23672 7.34626 7.37975 7.79544 8.02480 8.77500 8.82389 10.28984 10.50998 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.003203 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.516446 B = 8738.996910 C = 8986.213740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.171 4.171 3 C 0.352 3.648 4 O -0.428 6.428 5 C 0.030 3.970 6 H 0.106 0.894 7 C -0.132 4.132 8 C -0.158 4.158 9 O -0.293 6.293 10 C 0.109 3.891 11 C -0.221 4.221 12 C -0.056 4.056 13 C -0.135 4.135 14 C 0.389 3.611 15 O -0.545 6.545 16 C -0.518 4.518 17 H 0.075 0.925 18 C 0.080 3.920 19 N -0.736 5.736 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.056 4.056 25 C -0.161 4.161 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.274 0.726 39 H 0.137 0.863 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 -8.057 11.076 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.224 3.776 4 O -0.298 6.298 5 C -0.028 4.028 6 H 0.124 0.876 7 C -0.169 4.169 8 C -0.215 4.215 9 O -0.207 6.207 10 C 0.064 3.936 11 C -0.240 4.240 12 C -0.074 4.074 13 C -0.136 4.136 14 C 0.285 3.715 15 O -0.435 6.435 16 C -0.549 4.549 17 H 0.093 0.907 18 C -0.144 4.144 19 N -0.364 5.364 20 Si 0.730 3.270 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.075 4.075 25 C -0.180 4.180 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.392 -7.941 10.946 19.032 hybrid contribution 0.300 0.657 -0.199 0.749 sum -13.092 -7.284 10.747 18.438 Atomic orbital electron populations 1.21601 0.93387 1.01978 1.03255 1.22050 0.98598 0.95131 1.05016 1.24757 0.89812 0.91444 0.71550 1.90412 1.58387 1.47673 1.33328 1.23007 0.95554 0.85013 0.99180 0.87628 1.21887 0.97673 1.02528 0.94840 1.21947 0.93910 1.03478 1.02181 1.86115 1.45604 1.25025 1.63981 1.19176 0.87390 0.94615 0.92396 1.21042 0.98730 0.98277 1.05931 1.21048 0.95234 0.97339 0.93822 1.21829 0.99376 0.92536 0.99900 1.18068 0.82711 0.89744 0.80961 1.90498 1.46586 1.47854 1.58537 1.20947 1.05272 0.97208 1.31434 0.90722 1.26009 0.95589 0.98653 0.94112 1.69963 1.08401 1.33237 1.24812 0.86365 0.79572 0.82572 0.78501 1.19434 1.20140 1.18420 1.21287 0.91899 1.00004 0.94266 1.20254 1.00855 0.94118 1.02743 0.91803 0.92058 0.91969 0.88056 0.88101 0.90538 0.90147 0.92148 0.91981 0.91411 0.85935 0.85493 0.91501 0.84581 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.17 -1.19 6.31 -27.88 -0.18 -1.37 16 3 C 0.35 3.93 6.45 -29.04 -0.19 3.74 16 4 O -0.43 -6.45 16.19 -13.50 -0.22 -6.66 16 5 C 0.03 0.35 2.47 -27.88 -0.07 0.28 16 6 H 0.11 1.10 5.44 -51.93 -0.28 0.81 16 7 C -0.13 -1.24 5.62 -26.73 -0.15 -1.39 16 8 C -0.16 -1.67 8.46 37.16 0.31 -1.36 16 9 O -0.29 -4.65 9.15 -38.16 -0.35 -5.00 16 10 C 0.11 1.87 5.66 -38.89 -0.22 1.65 16 11 C -0.22 -3.72 7.26 -39.64 -0.29 -4.01 16 12 C -0.06 -1.15 9.57 -39.35 -0.38 -1.53 16 13 C -0.14 -3.14 5.89 -104.81 -0.62 -3.76 16 14 C 0.39 10.94 6.90 -34.43 -0.24 10.71 16 15 O -0.54 -17.19 14.91 5.08 0.08 -17.12 16 16 C -0.52 -14.12 8.84 -37.44 -0.33 -14.45 16 17 H 0.07 1.84 6.05 -52.49 -0.32 1.53 16 18 C 0.08 2.13 5.50 -17.31 -0.10 2.04 16 19 N -0.74 -21.07 11.75 55.57 0.65 -20.41 16 20 Si 0.91 19.17 29.56 -169.99 -5.03 14.14 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.06 -1.14 9.41 -39.35 -0.37 -1.51 16 25 C -0.16 -2.92 9.95 -39.64 -0.39 -3.31 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.46 7.73 -51.93 -0.40 0.06 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.51 7.70 -51.93 -0.40 0.11 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.63 6.67 -51.92 -0.35 0.28 16 35 H 0.07 0.90 6.48 -51.93 -0.34 0.57 16 36 H 0.12 1.64 4.21 -52.49 -0.22 1.42 16 37 H 0.13 2.66 7.65 -52.49 -0.40 2.26 16 38 H 0.27 7.01 8.29 -40.82 -0.34 6.68 16 39 H 0.14 2.64 6.21 -52.49 -0.33 2.32 16 40 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -34.33 333.62 -7.81 -42.14 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.12 Total: 2.89 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.86 Total: -15.01 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.65 Total: -20.41 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.49 Total: -28.78 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.33 -7.81 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.901 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds