Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.20755 * 120.00072 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99562 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47378 * 45.00207 * 5 3 2 7 7 C 1.53006 * 109.47352 * 285.00009 * 5 3 2 8 8 C 1.52998 * 109.47215 * 175.00536 * 7 5 3 9 9 O 1.42908 * 109.46817 * 165.00353 * 5 3 2 10 10 C 1.35653 * 116.99739 * 218.83518 * 9 5 3 11 11 C 1.39165 * 119.90624 * 354.37485 * 10 9 5 12 12 C 1.37125 * 120.09304 * 179.97438 * 11 10 9 13 13 C 1.39949 * 119.90242 * 0.02562 * 12 11 10 14 14 C 1.47570 * 120.09146 * 180.02562 * 13 12 11 15 15 O 1.21821 * 120.00106 * 359.97438 * 14 13 12 16 16 C 1.41765 * 120.00196 * 180.02562 * 14 13 12 17 17 H 1.07996 * 119.99775 * 354.44058 * 16 14 13 18 18 C 1.40345 * 120.00314 * 174.44096 * 16 14 13 19 19 N 1.30532 * 119.99876 * 5.32980 * 18 16 14 20 20 Si 1.86795 * 120.00304 * 185.32798 * 18 16 14 21 21 H 1.48498 * 109.47146 * 94.99362 * 20 18 16 22 22 H 1.48504 * 109.47197 * 215.00201 * 20 18 16 23 23 H 1.48506 * 109.46974 * 334.99652 * 20 18 16 24 24 C 1.39944 * 119.81734 * 0.27344 * 13 12 11 25 25 C 1.37120 * 119.90336 * 359.44830 * 24 13 12 26 26 H 1.08999 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46610 * 299.99663 * 1 2 3 28 28 H 1.08997 * 109.47288 * 59.99681 * 1 2 3 29 29 H 1.09005 * 109.46671 * 239.99854 * 2 1 3 30 30 H 1.09006 * 109.46824 * 120.00707 * 2 1 3 31 31 H 1.08997 * 109.47191 * 295.00517 * 7 5 3 32 32 H 1.09000 * 109.46633 * 55.00232 * 7 5 3 33 33 H 1.09001 * 109.47161 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46621 * 299.99965 * 8 7 5 35 35 H 1.09000 * 109.47301 * 59.99791 * 8 7 5 36 36 H 1.07993 * 119.95680 * 0.02562 * 11 10 9 37 37 H 1.07995 * 120.05030 * 179.97438 * 12 11 10 38 38 H 0.97001 * 120.00406 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.05168 * 179.70233 * 24 13 12 40 40 H 1.07999 * 119.95931 * 180.27386 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2477 2.3386 0.0005 5 6 3.5140 1.6961 -0.0006 6 1 4.0037 1.0481 -0.7276 7 6 4.0843 1.4220 1.3925 8 6 5.6057 1.5808 1.3611 9 8 3.7444 3.0627 -0.3491 10 6 4.8074 3.3230 -1.1507 11 6 5.6819 2.2978 -1.4982 12 6 6.7573 2.5565 -2.3087 13 6 6.9750 3.8539 -2.7860 14 6 8.1307 4.1369 -3.6590 15 8 8.8971 3.2406 -3.9646 16 6 8.3497 5.4520 -4.1410 17 1 7.6238 6.2270 -3.9444 18 6 9.5099 5.7467 -4.8737 19 7 10.3358 4.7903 -5.2008 20 14 9.8722 7.5076 -5.3808 21 1 10.7717 8.1358 -4.3801 22 1 10.5310 7.5139 -6.7117 23 1 8.6017 8.2730 -5.4539 24 6 6.0967 4.8832 -2.4291 25 6 5.0205 4.6147 -1.6228 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 3.6598 2.1296 2.1046 32 1 3.8312 0.4059 1.6952 33 1 6.0120 1.3851 2.3535 34 1 6.0302 0.8730 0.6490 35 1 5.8588 2.5968 1.0584 36 1 5.5129 1.2968 -1.1297 37 1 7.4358 1.7604 -2.5775 38 1 11.1375 4.9938 -5.7075 39 1 6.2638 5.8868 -2.7914 40 1 4.3396 5.4075 -1.3504 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = -119.494413 kcal Electronic energy + Delta-G solvation = -22531.347699 eV Core-core repulsion = 19082.602889 eV Total energy + Delta-G solvation = -3448.744811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79383 -40.38230 -39.15848 -37.53114 -34.96090 -34.76783 -33.58427 -32.12248 -31.29610 -29.26989 -28.45144 -25.27486 -24.26714 -24.07162 -22.47567 -21.45421 -20.43173 -19.46887 -18.57192 -17.66821 -17.48193 -16.89791 -16.59581 -16.16429 -16.02514 -15.70700 -15.41439 -14.99107 -14.66456 -14.47810 -14.32361 -14.15648 -13.81573 -13.55844 -13.36235 -13.24817 -13.09203 -12.96633 -12.87615 -12.65261 -12.60306 -12.48598 -12.10246 -12.04490 -11.92694 -11.77225 -11.38097 -10.99736 -10.55732 -9.97955 -9.61984 -9.02231 -8.35700 -7.07108 0.19680 0.47506 0.84779 1.37636 1.38120 1.55204 1.93393 2.19708 2.21456 2.84004 2.99413 3.66545 3.72444 3.76208 3.84585 3.92220 4.03187 4.19660 4.25324 4.28523 4.29330 4.44723 4.51948 4.54541 4.71894 4.74373 4.83382 4.98429 5.01163 5.04419 5.06663 5.11828 5.19864 5.28933 5.31322 5.37098 5.44014 5.74348 5.76414 5.98021 6.33805 6.52743 6.69965 6.79547 8.24366 8.48306 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.003203 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.516446 B = 8738.996910 C = 8986.213740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C 0.356 3.644 4 O -0.477 6.477 5 C 0.014 3.986 6 H 0.124 0.876 7 C -0.125 4.125 8 C -0.160 4.160 9 O -0.306 6.306 10 C 0.128 3.872 11 C -0.204 4.204 12 C -0.063 4.063 13 C -0.179 4.179 14 C 0.366 3.634 15 O -0.599 6.599 16 C -0.545 4.545 17 H 0.094 0.906 18 C 0.023 3.977 19 N -0.787 5.787 20 Si 0.994 3.006 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.246 1.246 24 C -0.053 4.053 25 C -0.166 4.166 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.162 0.838 37 H 0.114 0.886 38 H 0.282 0.718 39 H 0.139 0.861 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.982 -8.609 12.509 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.232 3.768 4 O -0.350 6.350 5 C -0.042 4.042 6 H 0.141 0.859 7 C -0.163 4.163 8 C -0.218 4.218 9 O -0.220 6.220 10 C 0.083 3.917 11 C -0.222 4.222 12 C -0.081 4.081 13 C -0.180 4.180 14 C 0.267 3.733 15 O -0.493 6.493 16 C -0.576 4.576 17 H 0.112 0.888 18 C -0.195 4.195 19 N -0.416 5.416 20 Si 0.813 3.187 21 H -0.184 1.184 22 H -0.192 1.192 23 H -0.169 1.169 24 C -0.071 4.071 25 C -0.184 4.184 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.179 0.821 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.156 0.844 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.078 -8.508 12.401 21.295 hybrid contribution 0.678 0.704 -0.509 1.102 sum -14.400 -7.803 11.892 20.240 Atomic orbital electron populations 1.21634 0.93971 1.03074 1.01817 1.22156 0.98023 0.92194 1.07692 1.25350 0.88994 0.92937 0.69542 1.90415 1.59226 1.49439 1.35961 1.23549 0.96744 0.82965 1.00967 0.85880 1.21919 0.96408 1.04861 0.93063 1.21955 0.94993 1.01537 1.03269 1.86126 1.44501 1.28260 1.63113 1.19239 0.87252 0.94260 0.90976 1.21229 0.96798 1.00100 1.04118 1.21015 0.96363 0.96042 0.94705 1.21464 0.99617 0.94815 1.02096 1.18757 0.83573 0.89797 0.81197 1.90434 1.48920 1.49120 1.60869 1.21465 1.06460 0.97716 1.31938 0.88815 1.27270 0.94787 1.04168 0.93320 1.70101 1.09293 1.36504 1.25745 0.85053 0.79957 0.75398 0.78328 1.18414 1.19199 1.16859 1.21227 0.91988 0.99373 0.94555 1.20441 1.00362 0.95460 1.02174 0.89348 0.93152 0.93912 0.85733 0.84583 0.91321 0.85830 0.90567 0.91384 0.94706 0.82072 0.86778 0.90725 0.84356 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.20 71.98 0.66 -1.13 16 2 C -0.16 -1.59 6.31 29.85 0.19 -1.40 16 3 C 0.36 6.95 6.45 29.10 0.19 7.14 16 4 O -0.48 -13.82 16.19 17.21 0.28 -13.54 16 5 C 0.01 0.29 2.47 29.85 0.07 0.36 16 6 H 0.12 2.03 5.44 -2.39 -0.01 2.01 16 7 C -0.13 -1.88 5.62 30.60 0.17 -1.71 16 8 C -0.16 -2.94 8.46 71.98 0.61 -2.33 16 9 O -0.31 -9.08 9.15 -71.04 -0.65 -9.73 16 10 C 0.13 4.22 5.66 22.72 0.13 4.35 16 11 C -0.20 -6.59 7.26 22.23 0.16 -6.43 16 12 C -0.06 -2.64 9.57 22.42 0.21 -2.43 16 13 C -0.18 -8.66 5.89 -19.99 -0.12 -8.77 16 14 C 0.37 21.78 6.90 25.61 0.18 21.95 16 15 O -0.60 -40.27 14.91 -4.74 -0.07 -40.34 16 16 C -0.55 -30.81 8.84 23.65 0.21 -30.60 16 17 H 0.09 4.72 6.05 -2.91 -0.02 4.70 16 18 C 0.02 1.28 5.50 85.40 0.47 1.75 16 19 N -0.79 -46.95 11.75 21.89 0.26 -46.69 16 20 Si 0.99 39.58 29.56 68.60 2.03 41.61 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 24 C -0.05 -2.19 9.41 22.42 0.21 -1.98 16 25 C -0.17 -5.88 9.95 22.23 0.22 -5.66 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 28 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 29 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.14 0.44 7.73 -2.38 -0.02 0.42 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.12 0.85 7.70 -2.39 -0.02 0.83 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.15 6.67 -2.38 -0.02 1.14 16 35 H 0.03 0.86 6.48 -2.39 -0.02 0.85 16 36 H 0.16 3.82 4.21 -2.91 -0.01 3.81 16 37 H 0.11 5.02 7.65 -2.91 -0.02 4.99 16 38 H 0.28 14.98 8.29 -92.71 -0.77 14.21 16 39 H 0.14 5.46 6.21 -2.91 -0.02 5.44 16 40 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -81.28 333.62 6.47 -74.81 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 1.06 Total: 20.77 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.57 Total: -26.90 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.26 Total: -46.69 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.44 Total: -63.61 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -81.28 6.47 -74.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.683 kcal (2) G-P(sol) polarization free energy of solvation -81.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds