Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47057 * 2 1 4 4 O 1.20759 * 120.00259 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99982 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47430 * 319.99848 * 5 3 2 7 7 C 1.53008 * 109.47080 * 80.00018 * 5 3 2 8 8 C 1.53001 * 109.46881 * 185.00121 * 7 5 3 9 9 O 1.42903 * 109.47251 * 199.99871 * 5 3 2 10 10 C 1.35662 * 116.99905 * 146.23260 * 9 5 3 11 11 C 1.39166 * 119.90696 * 357.30922 * 10 9 5 12 12 C 1.37595 * 120.09402 * 180.02562 * 11 10 9 13 13 C 1.39950 * 119.90341 * 0.27604 * 12 11 10 14 14 C 1.47570 * 120.09122 * 179.70336 * 13 12 11 15 15 O 1.21819 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.41763 * 120.00108 * 179.97438 * 14 13 12 17 17 H 1.08007 * 119.99513 * 0.02562 * 16 14 13 18 18 C 1.40341 * 120.00291 * 179.97438 * 16 14 13 19 19 N 1.30534 * 119.99905 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00052 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47280 * 89.99854 * 20 18 16 22 22 H 1.48503 * 109.46906 * 210.00007 * 20 18 16 23 23 H 1.48501 * 109.46984 * 329.99886 * 20 18 16 24 24 C 1.39954 * 119.81342 * 359.44427 * 13 12 11 25 25 C 1.37598 * 119.90215 * 0.53423 * 24 13 12 26 26 H 1.09003 * 109.46963 * 59.99539 * 1 2 3 27 27 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46829 * 300.00204 * 1 2 3 29 29 H 1.09003 * 109.46613 * 240.00528 * 2 1 3 30 30 H 1.08991 * 109.47381 * 119.99886 * 2 1 3 31 31 H 1.08995 * 109.46790 * 304.99423 * 7 5 3 32 32 H 1.08999 * 109.46982 * 65.00420 * 7 5 3 33 33 H 1.09000 * 109.47254 * 300.00086 * 8 7 5 34 34 H 1.08999 * 109.47460 * 59.99980 * 8 7 5 35 35 H 1.09003 * 109.47240 * 179.97438 * 8 7 5 36 36 H 1.08001 * 119.95361 * 359.97038 * 11 10 9 37 37 H 1.07998 * 120.04527 * 179.97438 * 12 11 10 38 38 H 0.96993 * 119.99885 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.04329 * 180.25571 * 24 13 12 40 40 H 1.08004 * 119.95097 * 179.74509 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2477 2.3387 -0.0005 5 6 3.5139 1.6962 -0.0006 6 1 4.0153 0.9885 0.6597 7 6 4.0606 1.5433 -1.4215 8 6 5.5824 1.6999 -1.4020 9 8 3.7511 3.0279 0.4603 10 6 4.8845 3.2395 1.1752 11 6 5.7246 2.1716 1.4761 12 6 6.8748 2.3818 2.2014 13 6 7.1964 3.6707 2.6416 14 6 8.4256 3.8998 3.4254 15 8 9.1618 2.9661 3.6905 16 6 8.7497 5.2063 3.8699 17 1 8.0968 6.0340 3.6352 18 6 9.9184 5.4240 4.6157 19 7 10.7068 4.4234 4.9006 20 14 10.3451 7.1456 5.2020 21 1 9.7451 7.3756 6.5407 22 1 11.8208 7.2870 5.2900 23 1 9.8087 8.1428 4.2412 24 6 6.3517 4.7428 2.3318 25 6 5.2037 4.5238 1.6056 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8018 0.5569 -1.8061 32 1 3.6247 2.3094 -2.0628 33 1 5.8413 2.6863 -1.0173 34 1 6.0183 0.9339 -0.7607 35 1 5.9719 1.5906 -2.4142 36 1 5.4730 1.1764 1.1406 37 1 7.5260 1.5524 2.4348 38 1 11.5147 4.5740 5.4158 39 1 6.5984 5.7396 2.6660 40 1 4.5492 5.3499 1.3695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -98.775013 kcal Electronic energy + Delta-G solvation = -22539.267037 eV Core-core repulsion = 19091.420687 eV Total energy + Delta-G solvation = -3447.846350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66697 -39.17478 -37.51510 -35.73719 -33.95448 -32.95217 -32.69730 -30.53348 -29.79008 -28.15415 -26.60508 -24.46893 -23.00937 -22.52254 -21.39039 -19.71677 -19.44496 -18.20154 -16.91503 -16.42170 -15.99996 -15.73534 -15.36338 -15.20131 -14.80788 -14.25228 -13.89029 -13.65226 -13.37423 -13.12025 -12.89499 -12.72670 -12.68191 -12.36138 -12.30184 -12.09069 -11.94632 -11.75444 -11.62609 -11.49317 -11.20879 -11.15471 -11.07347 -10.57413 -10.40050 -10.31900 -9.92946 -9.65543 -8.98964 -8.44418 -7.50444 -7.47351 -6.32459 -4.92496 1.66090 1.81405 1.97768 2.97220 3.04186 3.12127 3.15449 3.89658 3.99403 4.01492 4.53058 4.54409 4.61786 4.65146 4.76552 4.82963 5.01710 5.19272 5.31047 5.32542 5.42346 5.46780 5.50172 5.58496 5.75995 5.79679 5.83881 5.85351 5.91099 6.04978 6.10593 6.21453 6.27620 6.60930 6.80788 7.01177 7.17516 7.23302 7.34155 7.37156 7.78934 8.01859 8.77334 8.82278 10.29140 10.51199 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032215 B = 0.003185 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.956439 B = 8788.859875 C = 9015.049415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.354 3.646 4 O -0.428 6.428 5 C 0.030 3.970 6 H 0.105 0.895 7 C -0.133 4.133 8 C -0.158 4.158 9 O -0.294 6.294 10 C 0.110 3.890 11 C -0.221 4.221 12 C -0.055 4.055 13 C -0.135 4.135 14 C 0.389 3.611 15 O -0.544 6.544 16 C -0.517 4.517 17 H 0.074 0.926 18 C 0.079 3.921 19 N -0.735 5.735 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.056 4.056 25 C -0.163 4.163 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.274 0.726 39 H 0.137 0.863 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 -7.270 -10.414 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.227 3.773 4 O -0.298 6.298 5 C -0.027 4.027 6 H 0.122 0.878 7 C -0.171 4.171 8 C -0.215 4.215 9 O -0.208 6.208 10 C 0.066 3.934 11 C -0.240 4.240 12 C -0.074 4.074 13 C -0.137 4.137 14 C 0.285 3.715 15 O -0.435 6.435 16 C -0.548 4.548 17 H 0.092 0.908 18 C -0.144 4.144 19 N -0.364 5.364 20 Si 0.730 3.270 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.074 4.074 25 C -0.181 4.181 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.121 -7.177 -10.283 18.885 hybrid contribution 0.311 0.634 0.252 0.750 sum -13.809 -6.543 -10.031 18.279 Atomic orbital electron populations 1.21601 0.93368 1.01996 1.03256 1.22044 0.98604 0.95073 1.05042 1.24696 0.89657 0.91450 0.71512 1.90411 1.58410 1.47682 1.33295 1.22993 0.95643 0.86203 0.97908 0.87769 1.21906 0.97857 1.02909 0.94391 1.21953 0.93835 1.03511 1.02229 1.86121 1.39357 1.27832 1.67499 1.19138 0.86159 0.94509 0.93608 1.21103 0.98184 0.97628 1.07050 1.21159 0.94584 0.97698 0.93932 1.21827 0.99660 0.92349 0.99818 1.18062 0.82830 0.90036 0.80575 1.90499 1.50806 1.45290 1.56865 1.20946 1.06583 0.95927 1.31350 0.90757 1.26009 0.95593 0.98277 0.94500 1.69958 1.09048 1.31954 1.25452 0.86380 0.78224 0.82544 0.79872 1.19368 1.20154 1.18456 1.21405 0.91738 0.99878 0.94394 1.20352 0.99551 0.94072 1.04151 0.92046 0.91785 0.91972 0.88083 0.88028 0.90227 0.90541 0.91385 0.91952 0.92182 0.86023 0.85479 0.91492 0.84575 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.17 -1.18 6.36 -27.88 -0.18 -1.36 16 3 C 0.35 3.93 6.42 -29.04 -0.19 3.75 16 4 O -0.43 -6.39 16.24 -13.12 -0.21 -6.60 16 5 C 0.03 0.35 2.51 -27.88 -0.07 0.28 16 6 H 0.10 1.07 5.36 -51.93 -0.28 0.79 16 7 C -0.13 -1.29 5.62 -26.73 -0.15 -1.44 16 8 C -0.16 -1.73 8.44 37.16 0.31 -1.42 16 9 O -0.29 -4.65 9.27 -37.81 -0.35 -5.00 16 10 C 0.11 1.89 5.33 -38.90 -0.21 1.68 16 11 C -0.22 -3.70 7.11 -39.47 -0.28 -3.98 16 12 C -0.06 -1.13 9.59 -39.18 -0.38 -1.51 16 13 C -0.14 -3.14 5.89 -104.81 -0.62 -3.75 16 14 C 0.39 10.92 6.91 -34.43 -0.24 10.68 16 15 O -0.54 -17.16 14.89 5.08 0.08 -17.08 16 16 C -0.52 -14.08 8.86 -37.45 -0.33 -14.41 16 17 H 0.07 1.83 6.01 -52.48 -0.32 1.51 16 18 C 0.08 2.12 5.50 -17.31 -0.10 2.03 16 19 N -0.74 -21.05 11.73 55.57 0.65 -20.39 16 20 Si 0.91 19.14 29.56 -169.99 -5.03 14.11 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.06 -1.13 9.43 -39.17 -0.37 -1.50 16 25 C -0.16 -2.93 9.97 -39.47 -0.39 -3.32 16 26 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.10 0.46 8.04 -51.93 -0.42 0.05 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.93 6.25 -51.93 -0.32 0.61 16 34 H 0.06 0.66 6.79 -51.93 -0.35 0.30 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 1.63 4.53 -52.49 -0.24 1.39 16 37 H 0.13 2.65 7.65 -52.49 -0.40 2.25 16 38 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 39 H 0.14 2.63 6.19 -52.49 -0.33 2.31 16 40 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -34.21 334.10 -7.82 -42.03 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.16 Total: 2.90 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -2.84 Total: -15.00 kcal Atomic # 7 Polarization: -21.05 SS G_CDS: 0.65 Total: -20.39 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.49 Total: -28.69 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.21 -7.82 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.740 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds