Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47057 * 2 1 4 4 O 1.20759 * 120.00259 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99982 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47430 * 319.99848 * 5 3 2 7 7 C 1.53008 * 109.47080 * 80.00018 * 5 3 2 8 8 C 1.53001 * 109.46881 * 185.00121 * 7 5 3 9 9 O 1.42903 * 109.47251 * 199.99871 * 5 3 2 10 10 C 1.35662 * 116.99905 * 146.23260 * 9 5 3 11 11 C 1.39166 * 119.90696 * 357.30922 * 10 9 5 12 12 C 1.37595 * 120.09402 * 180.02562 * 11 10 9 13 13 C 1.39950 * 119.90341 * 0.27604 * 12 11 10 14 14 C 1.47570 * 120.09122 * 179.70336 * 13 12 11 15 15 O 1.21819 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.41763 * 120.00108 * 179.97438 * 14 13 12 17 17 H 1.08007 * 119.99513 * 0.02562 * 16 14 13 18 18 C 1.40341 * 120.00291 * 179.97438 * 16 14 13 19 19 N 1.30534 * 119.99905 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00052 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47280 * 89.99854 * 20 18 16 22 22 H 1.48503 * 109.46906 * 210.00007 * 20 18 16 23 23 H 1.48501 * 109.46984 * 329.99886 * 20 18 16 24 24 C 1.39954 * 119.81342 * 359.44427 * 13 12 11 25 25 C 1.37598 * 119.90215 * 0.53423 * 24 13 12 26 26 H 1.09003 * 109.46963 * 59.99539 * 1 2 3 27 27 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46829 * 300.00204 * 1 2 3 29 29 H 1.09003 * 109.46613 * 240.00528 * 2 1 3 30 30 H 1.08991 * 109.47381 * 119.99886 * 2 1 3 31 31 H 1.08995 * 109.46790 * 304.99423 * 7 5 3 32 32 H 1.08999 * 109.46982 * 65.00420 * 7 5 3 33 33 H 1.09000 * 109.47254 * 300.00086 * 8 7 5 34 34 H 1.08999 * 109.47460 * 59.99980 * 8 7 5 35 35 H 1.09003 * 109.47240 * 179.97438 * 8 7 5 36 36 H 1.08001 * 119.95361 * 359.97038 * 11 10 9 37 37 H 1.07998 * 120.04527 * 179.97438 * 12 11 10 38 38 H 0.96993 * 119.99885 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.04329 * 180.25571 * 24 13 12 40 40 H 1.08004 * 119.95097 * 179.74509 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2477 2.3387 -0.0005 5 6 3.5139 1.6962 -0.0006 6 1 4.0153 0.9885 0.6597 7 6 4.0606 1.5433 -1.4215 8 6 5.5824 1.6999 -1.4020 9 8 3.7511 3.0279 0.4603 10 6 4.8845 3.2395 1.1752 11 6 5.7246 2.1716 1.4761 12 6 6.8748 2.3818 2.2014 13 6 7.1964 3.6707 2.6416 14 6 8.4256 3.8998 3.4254 15 8 9.1618 2.9661 3.6905 16 6 8.7497 5.2063 3.8699 17 1 8.0968 6.0340 3.6352 18 6 9.9184 5.4240 4.6157 19 7 10.7068 4.4234 4.9006 20 14 10.3451 7.1456 5.2020 21 1 9.7451 7.3756 6.5407 22 1 11.8208 7.2870 5.2900 23 1 9.8087 8.1428 4.2412 24 6 6.3517 4.7428 2.3318 25 6 5.2037 4.5238 1.6056 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8018 0.5569 -1.8061 32 1 3.6247 2.3094 -2.0628 33 1 5.8413 2.6863 -1.0173 34 1 6.0183 0.9339 -0.7607 35 1 5.9719 1.5906 -2.4142 36 1 5.4730 1.1764 1.1406 37 1 7.5260 1.5524 2.4348 38 1 11.5147 4.5740 5.4158 39 1 6.5984 5.7396 2.6660 40 1 4.5492 5.3499 1.3695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -119.122577 kcal Electronic energy + Delta-G solvation = -22540.149373 eV Core-core repulsion = 19091.420687 eV Total energy + Delta-G solvation = -3448.728687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79562 -40.37147 -39.15918 -37.50117 -34.91646 -34.75592 -33.60252 -32.06938 -31.31500 -29.27356 -28.44940 -25.27705 -24.26937 -24.07816 -22.44808 -21.43444 -20.45169 -19.45370 -18.55915 -17.67392 -17.48168 -16.93142 -16.60837 -16.18962 -16.02840 -15.70443 -15.34668 -15.00062 -14.64605 -14.46631 -14.29985 -14.13660 -13.86091 -13.54808 -13.35452 -13.25908 -13.07444 -12.97503 -12.87015 -12.67180 -12.60570 -12.49702 -12.09942 -12.05367 -11.93457 -11.78049 -11.35603 -10.99316 -10.56484 -9.94206 -9.61878 -9.01589 -8.34673 -7.07314 0.21392 0.46497 0.82924 1.38155 1.38224 1.54924 1.93702 2.20018 2.20933 2.83645 3.00755 3.64616 3.72879 3.76383 3.85021 3.92340 4.04971 4.19812 4.25270 4.27888 4.29560 4.44136 4.52434 4.54201 4.70911 4.74698 4.82516 4.98332 5.00654 5.04369 5.06352 5.11456 5.19936 5.29025 5.31406 5.36527 5.43827 5.74750 5.76555 5.98035 6.33794 6.51984 6.70163 6.79940 8.24927 8.48821 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032215 B = 0.003185 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.956439 B = 8788.859875 C = 9015.049415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C 0.359 3.641 4 O -0.476 6.476 5 C 0.015 3.985 6 H 0.124 0.876 7 C -0.127 4.127 8 C -0.160 4.160 9 O -0.307 6.307 10 C 0.130 3.870 11 C -0.204 4.204 12 C -0.062 4.062 13 C -0.178 4.178 14 C 0.366 3.634 15 O -0.598 6.598 16 C -0.545 4.545 17 H 0.094 0.906 18 C 0.023 3.977 19 N -0.787 5.787 20 Si 0.994 3.006 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.246 1.246 24 C -0.053 4.053 25 C -0.167 4.167 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.162 0.838 37 H 0.114 0.886 38 H 0.282 0.718 39 H 0.139 0.861 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.762 -7.721 -11.701 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 C 0.234 3.766 4 O -0.349 6.349 5 C -0.042 4.042 6 H 0.142 0.858 7 C -0.164 4.164 8 C -0.217 4.217 9 O -0.221 6.221 10 C 0.085 3.915 11 C -0.222 4.222 12 C -0.081 4.081 13 C -0.180 4.180 14 C 0.267 3.733 15 O -0.493 6.493 16 C -0.575 4.575 17 H 0.112 0.888 18 C -0.196 4.196 19 N -0.416 5.416 20 Si 0.812 3.188 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.169 1.169 24 C -0.071 4.071 25 C -0.185 4.185 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.179 0.821 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.156 0.844 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.883 -7.639 -11.592 21.095 hybrid contribution 0.702 0.661 0.522 1.096 sum -15.181 -6.978 -11.071 20.043 Atomic orbital electron populations 1.21634 0.93927 1.03085 1.01846 1.22152 0.98049 0.92151 1.07690 1.25283 0.88805 0.92931 0.69537 1.90415 1.59222 1.49427 1.35878 1.23528 0.96861 0.84385 0.99407 0.85834 1.21928 0.96532 1.05051 0.92894 1.21955 0.94983 1.01667 1.03123 1.86133 1.38195 1.30930 1.66853 1.19193 0.86160 0.94176 0.92010 1.21291 0.96216 0.99492 1.05199 1.21120 0.95853 0.96334 0.94765 1.21456 0.99367 0.94658 1.02486 1.18753 0.84031 0.90026 0.80538 1.90435 1.53070 1.46565 1.59252 1.21470 1.07684 0.96512 1.31879 0.88808 1.27266 0.94894 1.03508 0.93890 1.70099 1.09916 1.35213 1.26415 0.85071 0.78266 0.75826 0.79614 1.18293 1.19241 1.16920 1.21344 0.92026 0.99151 0.94614 1.20537 0.98959 0.95492 1.03553 0.93110 0.89359 0.93886 0.84593 0.85741 0.85979 0.91465 0.94711 0.91360 0.90731 0.82122 0.86781 0.90743 0.84363 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.20 71.98 0.66 -1.10 16 2 C -0.16 -1.57 6.36 29.85 0.19 -1.38 16 3 C 0.36 6.93 6.42 29.10 0.19 7.12 16 4 O -0.48 -13.63 16.24 16.84 0.27 -13.36 16 5 C 0.01 0.30 2.51 29.85 0.07 0.37 16 6 H 0.12 1.98 5.36 -2.39 -0.01 1.96 16 7 C -0.13 -1.99 5.62 30.60 0.17 -1.81 16 8 C -0.16 -3.07 8.44 71.98 0.61 -2.47 16 9 O -0.31 -9.08 9.27 -71.49 -0.66 -9.74 16 10 C 0.13 4.25 5.33 22.71 0.12 4.37 16 11 C -0.20 -6.52 7.11 22.34 0.16 -6.37 16 12 C -0.06 -2.61 9.59 22.53 0.22 -2.39 16 13 C -0.18 -8.61 5.89 -19.98 -0.12 -8.73 16 14 C 0.37 21.71 6.91 25.61 0.18 21.89 16 15 O -0.60 -40.19 14.89 -4.73 -0.07 -40.26 16 16 C -0.55 -30.73 8.86 23.65 0.21 -30.52 16 17 H 0.09 4.71 6.01 -2.91 -0.02 4.69 16 18 C 0.02 1.27 5.50 85.40 0.47 1.74 16 19 N -0.79 -46.92 11.73 21.89 0.26 -46.66 16 20 Si 0.99 39.52 29.56 68.60 2.03 41.55 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 24 C -0.05 -2.18 9.43 22.53 0.21 -1.96 16 25 C -0.17 -5.87 9.97 22.34 0.22 -5.65 16 26 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 29 H 0.14 0.43 8.04 -2.39 -0.02 0.42 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.12 0.93 8.04 -2.39 -0.02 0.91 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 0.89 6.25 -2.39 -0.01 0.88 16 34 H 0.07 1.22 6.79 -2.39 -0.02 1.20 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.16 3.76 4.53 -2.91 -0.01 3.75 16 37 H 0.11 5.00 7.65 -2.91 -0.02 4.97 16 38 H 0.28 14.97 8.29 -92.71 -0.77 14.21 16 39 H 0.14 5.43 6.19 -2.91 -0.02 5.41 16 40 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -80.98 334.10 6.45 -74.53 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.06 Total: 20.84 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.56 Total: -26.90 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.26 Total: -46.66 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -0.46 Total: -63.36 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -80.98 6.45 -74.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.594 kcal (2) G-P(sol) polarization free energy of solvation -80.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds