Wall clock time and date at job start Tue Mar 31 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48000 * 2 1 4 4 C 1.53088 * 109.47774 * 120.03536 * 2 1 3 5 5 C 1.53187 * 109.15897 * 177.59276 * 4 2 1 6 6 H 1.09007 * 109.61405 * 183.11220 * 5 4 2 7 7 O 1.42897 * 109.54426 * 62.88644 * 5 4 2 8 8 C 1.35633 * 116.99595 * 155.36073 * 7 5 4 9 9 C 1.38672 * 120.16451 * 5.48404 * 8 7 5 10 10 C 1.38086 * 120.09254 * 180.02562 * 9 8 7 11 11 C 1.38697 * 120.41792 * 359.97438 * 10 9 8 12 12 C 1.37702 * 120.31943 * 359.97438 * 11 10 9 13 13 C 1.39843 * 119.90062 * 0.02562 * 12 11 10 14 14 C 1.47535 * 120.20440 * 179.97438 * 13 12 11 15 15 O 1.21811 * 120.00391 * 179.97438 * 14 13 12 16 16 C 1.41836 * 119.99776 * 359.97438 * 14 13 12 17 17 H 1.07997 * 119.99738 * 0.02562 * 16 14 13 18 18 C 1.40327 * 119.99878 * 179.97438 * 16 14 13 19 19 N 1.30543 * 119.99693 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 119.99958 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47284 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46941 * 120.00439 * 20 18 16 23 23 H 1.48498 * 109.47599 * 240.00471 * 20 18 16 24 24 C 1.53181 * 109.03540 * 303.01547 * 5 4 2 25 25 C 1.53091 * 109.16097 * 56.98645 * 24 5 4 26 26 O 1.42902 * 109.41545 * 302.38805 * 25 24 5 27 27 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47040 * 300.02307 * 1 2 3 29 29 H 1.09002 * 109.46959 * 60.02240 * 1 2 3 30 30 H 1.08994 * 109.52253 * 57.69113 * 4 2 1 31 31 H 1.08999 * 109.52580 * 297.49486 * 4 2 1 32 32 H 1.07992 * 119.95219 * 0.02562 * 9 8 7 33 33 H 1.08003 * 119.79177 * 180.02562 * 10 9 8 34 34 H 1.08001 * 119.83882 * 180.27835 * 11 10 9 35 35 H 1.08001 * 120.04535 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99235 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.52054 * 176.88629 * 24 5 4 38 38 H 1.08999 * 109.52511 * 297.07841 * 24 5 4 39 39 H 1.09001 * 109.47949 * 62.36997 * 25 24 5 40 40 H 1.09001 * 109.48170 * 182.39390 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5711 -0.7710 1.2120 6 1 3.9405 -1.3321 2.0705 7 8 4.0926 0.5589 1.2498 8 6 5.3515 0.7131 1.7306 9 6 6.1156 -0.3985 2.0521 10 6 7.3969 -0.2397 2.5420 11 6 7.9299 1.0288 2.7161 12 6 7.1866 2.1444 2.4014 13 6 5.8876 1.9991 1.9043 14 6 5.0850 3.1898 1.5655 15 8 3.9541 3.0590 1.1323 16 6 5.6303 4.4869 1.7442 17 1 6.6332 4.6029 2.1279 18 6 4.8672 5.6194 1.4214 19 7 3.6552 5.4791 0.9572 20 14 5.5850 7.3277 1.6575 21 1 6.9654 7.2149 2.1934 22 1 5.6175 8.0356 0.3524 23 1 4.7433 8.0907 2.6137 24 6 4.0176 -1.4601 -0.0811 25 6 3.4307 -0.7092 -1.2792 26 8 2.0066 -0.6740 -1.1665 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 1.6443 -1.7376 1.2707 31 1 1.7148 -0.1846 2.1398 32 1 5.7082 -1.3897 1.9191 33 1 7.9879 -1.1089 2.7904 34 1 8.9347 1.1421 3.0957 35 1 7.6059 3.1301 2.5391 36 1 3.1276 6.2620 0.7345 37 1 5.1058 -1.4498 -0.1423 38 1 3.6613 -2.4902 -0.0867 39 1 3.8193 0.3091 -1.2957 40 1 3.7102 -1.2199 -2.2007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233528189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:55 Heat of formation + Delta-G solvation = -105.095390 kcal Electronic energy + Delta-G solvation = -23846.502538 eV Core-core repulsion = 20398.382116 eV Total energy + Delta-G solvation = -3448.120422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17412 -38.58529 -36.67459 -35.96307 -32.73804 -32.57712 -32.21963 -30.52747 -29.10906 -27.48510 -26.65189 -24.24738 -22.75431 -22.37115 -21.57163 -19.77313 -19.53102 -17.29622 -16.50298 -15.99409 -15.92466 -15.53061 -15.25985 -14.89351 -14.52025 -14.17061 -13.90307 -13.53303 -13.28753 -12.87772 -12.68651 -12.47699 -12.29922 -12.05823 -11.75546 -11.65610 -11.57370 -11.35951 -11.22727 -11.13204 -10.90366 -10.84836 -10.49798 -10.29941 -10.16774 -10.06080 -10.00040 -9.09143 -8.94416 -8.20517 -7.43717 -7.34344 -6.22754 -4.82761 1.80224 2.06598 3.05840 3.15096 3.19090 3.73835 4.03987 4.07126 4.08323 4.65916 4.83517 4.91956 4.99300 5.14361 5.31785 5.36474 5.46631 5.54528 5.66107 5.71485 5.76560 5.81203 5.84763 5.87987 5.91652 5.97486 6.09306 6.13840 6.17878 6.19851 6.34467 6.40088 6.53078 6.70683 6.92355 6.94922 7.16316 7.30605 7.48398 7.55248 8.08760 8.14283 8.85669 8.90630 10.38616 10.62113 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.006221 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.337181 B = 4500.023986 C = 6113.471769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.083 3.917 3 H 0.085 0.915 4 C -0.137 4.137 5 C 0.074 3.926 6 H 0.069 0.931 7 O -0.260 6.260 8 C 0.150 3.850 9 C -0.231 4.231 10 C -0.093 4.093 11 C -0.176 4.176 12 C -0.059 4.059 13 C -0.137 4.137 14 C 0.391 3.609 15 O -0.518 6.518 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.081 3.919 19 N -0.737 5.737 20 Si 0.903 3.097 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.178 4.178 25 C 0.067 3.933 26 O -0.385 6.385 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.272 0.728 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -11.218 0.662 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.103 0.897 4 C -0.175 4.175 5 C 0.017 3.983 6 H 0.087 0.913 7 O -0.172 6.172 8 C 0.104 3.896 9 C -0.249 4.249 10 C -0.111 4.111 11 C -0.194 4.194 12 C -0.077 4.077 13 C -0.139 4.139 14 C 0.285 3.715 15 O -0.405 6.405 16 C -0.553 4.553 17 H 0.090 0.910 18 C -0.142 4.142 19 N -0.366 5.366 20 Si 0.727 3.273 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.216 4.216 25 C -0.010 4.010 26 O -0.305 6.305 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.118 -11.192 0.173 11.194 hybrid contribution 1.005 0.560 0.530 1.267 sum 1.124 -10.631 0.703 10.714 Atomic orbital electron populations 1.21735 0.93513 1.01926 1.02591 1.22119 0.94406 0.97062 0.83827 0.89701 1.22220 0.92996 1.01801 1.00438 1.22422 0.94671 0.84026 0.97186 0.91265 1.86506 1.26518 1.26643 1.77498 1.19417 0.84235 0.93397 0.92593 1.21111 0.96763 0.97395 1.09669 1.20810 0.94628 0.96953 0.98750 1.20950 1.00192 0.92706 1.05601 1.21411 0.92676 0.98819 0.94815 1.21569 0.96077 0.94437 1.01796 1.17980 0.86893 0.86016 0.80635 1.90533 1.19210 1.87474 1.43297 1.20934 1.01477 0.91895 1.40995 0.91019 1.25949 0.94239 1.00941 0.93028 1.69977 1.07869 1.31024 1.27723 0.86381 0.80228 0.81996 0.78691 1.18455 1.19935 1.19937 1.22723 1.01982 1.00185 0.96687 1.22412 0.81126 1.00668 0.96808 1.87820 1.20875 1.78156 1.43632 0.92553 0.91083 0.91931 0.90150 0.89940 0.86315 0.86986 0.86811 0.84812 0.91737 0.90394 0.90399 0.91819 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.56 37.16 0.36 -1.59 16 2 C 0.08 1.41 3.12 -26.69 -0.08 1.32 16 3 H 0.09 1.80 7.82 -51.93 -0.41 1.39 16 4 C -0.14 -2.08 5.14 -26.59 -0.14 -2.22 16 5 C 0.07 1.21 2.44 -26.54 -0.06 1.14 16 6 H 0.07 1.02 6.32 -51.93 -0.33 0.69 16 7 O -0.26 -5.61 6.84 -40.43 -0.28 -5.88 16 8 C 0.15 3.22 6.61 -38.61 -0.26 2.97 16 9 C -0.23 -4.01 8.23 -39.48 -0.32 -4.33 16 10 C -0.09 -1.48 10.04 -39.47 -0.40 -1.88 16 11 C -0.18 -2.96 10.03 -39.61 -0.40 -3.36 16 12 C -0.06 -1.19 9.43 -39.18 -0.37 -1.56 16 13 C -0.14 -3.27 5.90 -104.69 -0.62 -3.88 16 14 C 0.39 11.12 6.91 -34.42 -0.24 10.88 16 15 O -0.52 -16.26 13.71 -16.74 -0.23 -16.49 16 16 C -0.52 -14.35 8.86 -37.42 -0.33 -14.68 16 17 H 0.07 1.79 6.02 -52.49 -0.32 1.48 16 18 C 0.08 2.18 5.50 -17.31 -0.10 2.09 16 19 N -0.74 -21.20 11.73 55.57 0.65 -20.55 16 20 Si 0.90 19.36 29.56 -169.99 -5.03 14.34 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 24 C -0.18 -2.55 5.45 -26.59 -0.14 -2.70 16 25 C 0.07 1.06 6.69 37.20 0.25 1.31 16 26 O -0.39 -6.57 10.41 -35.23 -0.37 -6.93 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.12 1.75 5.48 -52.49 -0.29 1.46 16 33 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.13 2.60 6.20 -52.49 -0.33 2.27 16 36 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 37 H 0.08 1.10 6.98 -51.93 -0.36 0.73 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.21 7.82 -51.93 -0.41 0.81 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -32.72 325.53 -8.56 -41.28 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.37 Total: 5.81 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.85 Total: -16.49 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.65 Total: -20.55 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.87 Total: -29.30 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.72 -8.56 -41.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233528189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.818 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds