Wall clock time and date at job start Tue Mar 31 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48000 * 2 1 4 4 C 1.53088 * 109.47774 * 120.03536 * 2 1 3 5 5 C 1.53187 * 109.15897 * 177.59276 * 4 2 1 6 6 H 1.09007 * 109.61405 * 183.11220 * 5 4 2 7 7 O 1.42897 * 109.54426 * 62.88644 * 5 4 2 8 8 C 1.35633 * 116.99595 * 155.36073 * 7 5 4 9 9 C 1.38672 * 120.16451 * 5.48404 * 8 7 5 10 10 C 1.38086 * 120.09254 * 180.02562 * 9 8 7 11 11 C 1.38697 * 120.41792 * 359.97438 * 10 9 8 12 12 C 1.37702 * 120.31943 * 359.97438 * 11 10 9 13 13 C 1.39843 * 119.90062 * 0.02562 * 12 11 10 14 14 C 1.47535 * 120.20440 * 179.97438 * 13 12 11 15 15 O 1.21811 * 120.00391 * 179.97438 * 14 13 12 16 16 C 1.41836 * 119.99776 * 359.97438 * 14 13 12 17 17 H 1.07997 * 119.99738 * 0.02562 * 16 14 13 18 18 C 1.40327 * 119.99878 * 179.97438 * 16 14 13 19 19 N 1.30543 * 119.99693 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 119.99958 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47284 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46941 * 120.00439 * 20 18 16 23 23 H 1.48498 * 109.47599 * 240.00471 * 20 18 16 24 24 C 1.53181 * 109.03540 * 303.01547 * 5 4 2 25 25 C 1.53091 * 109.16097 * 56.98645 * 24 5 4 26 26 O 1.42902 * 109.41545 * 302.38805 * 25 24 5 27 27 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47040 * 300.02307 * 1 2 3 29 29 H 1.09002 * 109.46959 * 60.02240 * 1 2 3 30 30 H 1.08994 * 109.52253 * 57.69113 * 4 2 1 31 31 H 1.08999 * 109.52580 * 297.49486 * 4 2 1 32 32 H 1.07992 * 119.95219 * 0.02562 * 9 8 7 33 33 H 1.08003 * 119.79177 * 180.02562 * 10 9 8 34 34 H 1.08001 * 119.83882 * 180.27835 * 11 10 9 35 35 H 1.08001 * 120.04535 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99235 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.52054 * 176.88629 * 24 5 4 38 38 H 1.08999 * 109.52511 * 297.07841 * 24 5 4 39 39 H 1.09001 * 109.47949 * 62.36997 * 25 24 5 40 40 H 1.09001 * 109.48170 * 182.39390 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5711 -0.7710 1.2120 6 1 3.9405 -1.3321 2.0705 7 8 4.0926 0.5589 1.2498 8 6 5.3515 0.7131 1.7306 9 6 6.1156 -0.3985 2.0521 10 6 7.3969 -0.2397 2.5420 11 6 7.9299 1.0288 2.7161 12 6 7.1866 2.1444 2.4014 13 6 5.8876 1.9991 1.9043 14 6 5.0850 3.1898 1.5655 15 8 3.9541 3.0590 1.1323 16 6 5.6303 4.4869 1.7442 17 1 6.6332 4.6029 2.1279 18 6 4.8672 5.6194 1.4214 19 7 3.6552 5.4791 0.9572 20 14 5.5850 7.3277 1.6575 21 1 6.9654 7.2149 2.1934 22 1 5.6175 8.0356 0.3524 23 1 4.7433 8.0907 2.6137 24 6 4.0176 -1.4601 -0.0811 25 6 3.4307 -0.7092 -1.2792 26 8 2.0066 -0.6740 -1.1665 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 1.6443 -1.7376 1.2707 31 1 1.7148 -0.1846 2.1398 32 1 5.7082 -1.3897 1.9191 33 1 7.9879 -1.1089 2.7904 34 1 8.9347 1.1421 3.0957 35 1 7.6059 3.1301 2.5391 36 1 3.1276 6.2620 0.7345 37 1 5.1058 -1.4498 -0.1423 38 1 3.6613 -2.4902 -0.0867 39 1 3.8193 0.3091 -1.2957 40 1 3.7102 -1.2199 -2.2007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233528189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:54 Heat of formation + Delta-G solvation = -125.379752 kcal Electronic energy + Delta-G solvation = -23847.382134 eV Core-core repulsion = 20398.382116 eV Total energy + Delta-G solvation = -3449.000018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57412 -40.02948 -38.37529 -37.71626 -34.72400 -33.94294 -33.53727 -32.11844 -30.56835 -28.82414 -28.55177 -25.54938 -24.43334 -23.70594 -22.94247 -21.52816 -20.91710 -18.81065 -18.37913 -17.34369 -17.31669 -17.21552 -16.75311 -16.26394 -16.08266 -15.55839 -15.36950 -14.98434 -14.94866 -14.47416 -14.23189 -14.00977 -13.58344 -13.40454 -13.25975 -13.18460 -12.98531 -12.86128 -12.75717 -12.67641 -12.46301 -12.13648 -12.08909 -12.03056 -11.74904 -11.48008 -11.31251 -10.98403 -10.42981 -9.71805 -9.44677 -8.95251 -8.26882 -7.00147 0.27544 0.62097 1.35687 1.35810 1.53927 2.20953 2.29935 2.40575 2.77852 2.92418 3.60174 3.66949 3.76634 3.82527 3.91669 3.99716 4.06389 4.25308 4.26394 4.34203 4.47325 4.52968 4.56780 4.59407 4.67440 4.71075 4.76342 4.84148 4.89681 4.94129 4.99844 5.15586 5.21350 5.23580 5.24041 5.43925 5.55893 5.72401 5.97356 6.08464 6.20763 6.67936 6.75504 6.92195 8.34892 8.56959 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.006221 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.337181 B = 4500.023986 C = 6113.471769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.021 0.979 4 C -0.133 4.133 5 C 0.060 3.940 6 H 0.093 0.907 7 O -0.299 6.299 8 C 0.133 3.867 9 C -0.225 4.225 10 C -0.071 4.071 11 C -0.170 4.170 12 C -0.065 4.065 13 C -0.196 4.196 14 C 0.367 3.633 15 O -0.569 6.569 16 C -0.552 4.552 17 H 0.090 0.910 18 C 0.023 3.977 19 N -0.792 5.792 20 Si 0.992 3.008 21 H -0.244 1.244 22 H -0.266 1.266 23 H -0.265 1.265 24 C -0.166 4.166 25 C 0.063 3.937 26 O -0.389 6.389 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.278 0.722 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.014 0.986 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 -13.855 1.842 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.025 3.975 3 H 0.039 0.961 4 C -0.170 4.170 5 C 0.004 3.996 6 H 0.111 0.889 7 O -0.212 6.212 8 C 0.086 3.914 9 C -0.243 4.243 10 C -0.089 4.089 11 C -0.188 4.188 12 C -0.083 4.083 13 C -0.198 4.198 14 C 0.265 3.735 15 O -0.461 6.461 16 C -0.583 4.583 17 H 0.108 0.892 18 C -0.194 4.194 19 N -0.421 5.421 20 Si 0.811 3.189 21 H -0.166 1.166 22 H -0.191 1.191 23 H -0.190 1.190 24 C -0.204 4.204 25 C -0.014 4.014 26 O -0.308 6.308 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.181 0.819 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.033 0.967 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.414 -13.845 1.363 14.120 hybrid contribution 0.333 1.258 0.153 1.310 sum 2.747 -12.588 1.516 12.973 Atomic orbital electron populations 1.21720 0.91114 1.03712 1.02638 1.22034 0.96284 0.94129 0.85079 0.96071 1.22247 0.92769 1.03380 0.98616 1.22833 0.95091 0.82506 0.99158 0.88939 1.86490 1.27088 1.29962 1.77676 1.19658 0.84839 0.93883 0.92989 1.21449 0.97037 0.97289 1.08550 1.21436 0.93918 0.98258 0.95314 1.21355 1.01379 0.91838 1.04201 1.21468 0.91657 1.00323 0.94835 1.21253 0.97832 0.94077 1.06645 1.18722 0.86822 0.88458 0.79537 1.90479 1.21353 1.88764 1.45508 1.21441 1.02552 0.92624 1.41716 0.89243 1.27213 0.94295 1.06185 0.91744 1.70144 1.09950 1.32904 1.29125 0.85060 0.79931 0.74968 0.78983 1.16628 1.19120 1.18999 1.22677 1.02179 1.01241 0.94283 1.22505 0.80698 0.98706 0.99494 1.87805 1.21483 1.77641 1.43899 0.89696 0.90606 0.92466 0.86192 0.91085 0.83086 0.81870 0.82776 0.85203 0.91171 0.89861 0.86687 0.96748 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.56 71.98 0.69 -3.11 16 2 C 0.08 2.94 3.12 30.62 0.10 3.04 16 3 H 0.02 1.02 7.82 -2.39 -0.02 1.00 16 4 C -0.13 -4.02 5.14 30.69 0.16 -3.87 16 5 C 0.06 1.93 2.44 30.72 0.08 2.01 16 6 H 0.09 2.48 6.32 -2.38 -0.02 2.47 16 7 O -0.30 -13.68 6.84 -68.59 -0.47 -14.15 16 8 C 0.13 5.85 6.61 22.90 0.15 6.00 16 9 C -0.22 -7.20 8.23 22.34 0.18 -7.01 16 10 C -0.07 -1.94 10.04 22.34 0.22 -1.71 16 11 C -0.17 -5.13 10.03 22.25 0.22 -4.91 16 12 C -0.06 -2.62 9.43 22.53 0.21 -2.40 16 13 C -0.20 -9.85 5.90 -19.91 -0.12 -9.97 16 14 C 0.37 22.60 6.91 25.61 0.18 22.77 16 15 O -0.57 -39.38 13.71 16.17 0.22 -39.16 16 16 C -0.55 -32.22 8.86 23.67 0.21 -32.01 16 17 H 0.09 4.67 6.02 -2.91 -0.02 4.65 16 18 C 0.02 1.32 5.50 85.39 0.47 1.79 16 19 N -0.79 -48.80 11.73 21.89 0.26 -48.54 16 20 Si 0.99 40.98 29.56 68.60 2.03 43.00 16 21 H -0.24 -9.26 7.11 99.48 0.71 -8.55 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 C -0.17 -4.46 5.45 30.69 0.17 -4.29 16 25 C 0.06 2.04 6.69 72.01 0.48 2.52 16 26 O -0.39 -13.50 10.41 -148.98 -1.55 -15.05 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.15 3.77 5.48 -2.91 -0.02 3.75 16 33 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.13 5.14 6.20 -2.91 -0.02 5.12 16 36 H 0.28 15.36 8.29 -92.71 -0.77 14.59 16 37 H 0.08 2.15 6.98 -2.39 -0.02 2.13 16 38 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.01 0.60 7.82 -2.39 -0.02 0.58 16 40 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -81.96 325.53 4.94 -77.03 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 1.05 Total: 28.02 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.40 Total: -31.15 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.26 Total: -48.54 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -1.80 Total: -68.36 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -81.96 4.94 -77.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233528189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.352 kcal (2) G-P(sol) polarization free energy of solvation -81.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds