Wall clock time and date at job start Tue Mar 31 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.48558 * 2 1 4 4 C 1.53088 * 109.47721 * 120.02694 * 2 1 3 5 5 C 1.53187 * 109.16103 * 177.58770 * 4 2 1 6 6 H 1.09000 * 109.53912 * 62.97389 * 5 4 2 7 7 O 1.42905 * 109.54100 * 183.15329 * 5 4 2 8 8 C 1.35636 * 116.99688 * 204.84884 * 7 5 4 9 9 C 1.38675 * 120.15883 * 354.79388 * 8 7 5 10 10 C 1.38091 * 120.08736 * 180.30080 * 9 8 7 11 11 C 1.38684 * 120.41776 * 359.67941 * 10 9 8 12 12 C 1.37705 * 120.32463 * 0.02562 * 11 10 9 13 13 C 1.39841 * 119.89581 * 0.02562 * 12 11 10 14 14 C 1.47535 * 120.20084 * 179.97438 * 13 12 11 15 15 O 1.21819 * 119.99445 * 179.97438 * 14 13 12 16 16 C 1.41820 * 120.00266 * 359.72520 * 14 13 12 17 17 H 1.08002 * 120.00206 * 353.48580 * 16 14 13 18 18 C 1.40331 * 120.00360 * 173.47772 * 16 14 13 19 19 N 1.30543 * 119.99680 * 6.13584 * 18 16 14 20 20 Si 1.86800 * 120.00365 * 186.12726 * 18 16 14 21 21 H 1.48493 * 109.47038 * 94.98675 * 20 18 16 22 22 H 1.48496 * 109.47117 * 214.99020 * 20 18 16 23 23 H 1.48502 * 109.47019 * 334.98695 * 20 18 16 24 24 C 1.53175 * 109.03595 * 303.01598 * 5 4 2 25 25 C 1.53089 * 109.16110 * 56.98095 * 24 5 4 26 26 O 1.42904 * 109.47547 * 239.96451 * 2 1 3 27 27 H 1.08998 * 109.46934 * 299.97724 * 1 2 3 28 28 H 1.08994 * 109.46771 * 59.97565 * 1 2 3 29 29 H 1.08996 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.52762 * 57.68604 * 4 2 1 31 31 H 1.08996 * 109.57856 * 297.52038 * 4 2 1 32 32 H 1.07994 * 119.95649 * 0.02562 * 9 8 7 33 33 H 1.07996 * 119.78979 * 179.69974 * 10 9 8 34 34 H 1.08007 * 119.83718 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.04868 * 180.02562 * 12 11 10 36 36 H 0.96996 * 119.99925 * 179.97438 * 19 18 16 37 37 H 1.08996 * 109.52161 * 176.88431 * 24 5 4 38 38 H 1.08999 * 109.52455 * 297.07631 * 24 5 4 39 39 H 1.09008 * 109.47873 * 182.40584 * 25 24 5 40 40 H 1.08997 * 109.49110 * 62.38140 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5711 -0.7709 1.2121 6 1 3.9690 0.2434 1.2423 7 8 4.0536 -1.5075 2.3377 8 6 5.3131 -1.2326 2.7594 9 6 6.1116 -0.3540 2.0428 10 6 7.3958 -0.0800 2.4701 11 6 7.8951 -0.6739 3.6196 12 6 7.1150 -1.5443 4.3476 13 6 5.8129 -1.8321 3.9265 14 6 4.9714 -2.7641 4.7010 15 8 3.8374 -3.0118 4.3310 16 6 5.4843 -3.3757 5.8732 17 1 6.5220 -3.2432 6.1417 18 6 4.6436 -4.1530 6.6846 19 7 3.4233 -4.4126 6.3002 20 14 5.2706 -4.8166 8.3143 21 1 4.8814 -3.8909 9.4082 22 1 4.6786 -6.1552 8.5644 23 1 6.7504 -4.9310 8.2657 24 6 4.0176 -1.4603 -0.0808 25 6 3.4307 -0.7096 -1.2790 26 8 2.0065 -0.6744 -1.1664 27 1 -0.3633 0.5135 0.8902 28 1 -0.3633 0.5142 -0.8897 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6443 -1.7374 1.2710 31 1 1.7149 -0.1852 2.1404 32 1 5.7301 0.1132 1.1470 33 1 8.0152 0.6013 1.9057 34 1 8.9008 -0.4526 3.9454 35 1 7.5081 -2.0040 5.2423 36 1 2.8423 -4.9502 6.8608 37 1 5.1058 -1.4501 -0.1420 38 1 3.6612 -2.4904 -0.0862 39 1 3.7099 -1.2207 -2.2004 40 1 3.8193 0.3086 -1.2961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233528190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:57 Heat of formation + Delta-G solvation = -105.601871 kcal Electronic energy + Delta-G solvation = -23342.814650 eV Core-core repulsion = 19894.672265 eV Total energy + Delta-G solvation = -3448.142385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16624 -38.84397 -36.86451 -35.96597 -32.93167 -32.67817 -32.34873 -30.52548 -29.18700 -27.58637 -26.65339 -24.26318 -22.82686 -22.59871 -21.24682 -20.21195 -19.60581 -17.54577 -16.57635 -16.37257 -16.04214 -15.44072 -15.19548 -14.98180 -14.51217 -14.35615 -14.21372 -13.47075 -13.28509 -13.05891 -12.85962 -12.58468 -12.39340 -12.22762 -11.96936 -11.77531 -11.41453 -11.34615 -11.25163 -11.13240 -11.05129 -10.87998 -10.50290 -10.36950 -10.23008 -10.13891 -10.06366 -9.61374 -8.92434 -8.20273 -7.43327 -7.32870 -6.22446 -4.81268 1.80551 2.06901 3.07706 3.15608 3.18906 3.60823 3.76032 4.04472 4.09174 4.64899 4.72901 4.81622 4.87897 5.03797 5.08007 5.21788 5.29887 5.33218 5.40224 5.44534 5.59286 5.63697 5.66229 5.80162 5.85191 5.87927 5.93565 5.99081 6.11187 6.17515 6.25526 6.32286 6.40778 6.69969 6.93160 6.94935 7.16659 7.17009 7.31718 7.49033 8.09712 8.15587 8.86663 8.91794 10.39878 10.63186 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.004815 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.777082 B = 5813.670989 C = 7142.383538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.092 3.908 3 H 0.057 0.943 4 C -0.144 4.144 5 C 0.080 3.920 6 H 0.066 0.934 7 O -0.260 6.260 8 C 0.151 3.849 9 C -0.231 4.231 10 C -0.093 4.093 11 C -0.176 4.176 12 C -0.058 4.058 13 C -0.137 4.137 14 C 0.391 3.609 15 O -0.518 6.518 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.081 3.919 19 N -0.738 5.738 20 Si 0.904 3.096 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.183 4.183 25 C 0.068 3.932 26 O -0.380 6.380 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.272 0.728 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 9.139 -10.247 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.034 3.966 3 H 0.075 0.925 4 C -0.182 4.182 5 C 0.023 3.977 6 H 0.084 0.916 7 O -0.171 6.171 8 C 0.104 3.896 9 C -0.250 4.250 10 C -0.111 4.111 11 C -0.195 4.195 12 C -0.076 4.076 13 C -0.139 4.139 14 C 0.284 3.716 15 O -0.405 6.405 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.141 4.141 19 N -0.367 5.367 20 Si 0.728 3.272 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.220 4.220 25 C -0.008 4.008 26 O -0.300 6.300 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.385 8.729 -10.503 13.662 hybrid contribution 0.966 0.032 0.900 1.320 sum 1.350 8.761 -9.603 13.069 Atomic orbital electron populations 1.21750 0.92627 1.03338 1.02344 1.22075 0.95411 0.94663 0.84453 0.92486 1.22266 0.93473 1.03765 0.98648 1.22349 0.94884 0.94877 0.85624 0.91650 1.86535 1.26732 1.59085 1.44772 1.19428 0.84135 0.93290 0.92761 1.21099 0.96457 1.04624 1.02807 1.20804 0.94675 0.99153 0.96494 1.20949 1.00121 1.01146 0.97236 1.21411 0.92368 0.95095 0.98771 1.21573 0.96328 1.01482 0.94492 1.17995 0.86871 0.81474 0.85225 1.90549 1.19607 1.61410 1.68936 1.20898 0.97665 1.28692 1.08182 0.90976 1.25956 0.94364 0.94668 0.99153 1.69976 1.06000 1.25938 1.34788 0.86405 0.80151 0.78608 0.82033 1.19546 1.20227 1.18545 1.22813 1.01986 1.02258 0.94983 1.22500 0.80968 0.99241 0.98139 1.87919 1.20920 1.78059 1.43057 0.90851 0.91883 0.91457 0.89408 0.89885 0.86391 0.86959 0.86771 0.84766 0.91669 0.90280 0.89626 0.88543 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.56 37.16 0.36 -1.16 16 2 C 0.09 1.14 3.26 -26.68 -0.09 1.05 16 3 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.14 -2.21 5.07 -26.59 -0.13 -2.35 16 5 C 0.08 1.33 2.19 -26.54 -0.06 1.27 16 6 H 0.07 0.98 6.30 -51.93 -0.33 0.66 16 7 O -0.26 -5.85 7.89 -40.44 -0.32 -6.16 16 8 C 0.15 3.31 6.62 -38.61 -0.26 3.05 16 9 C -0.23 -4.07 8.29 -39.47 -0.33 -4.40 16 10 C -0.09 -1.49 10.04 -39.47 -0.40 -1.89 16 11 C -0.18 -2.98 10.02 -39.61 -0.40 -3.38 16 12 C -0.06 -1.19 9.43 -39.18 -0.37 -1.56 16 13 C -0.14 -3.33 5.90 -104.69 -0.62 -3.95 16 14 C 0.39 11.35 6.90 -34.42 -0.24 11.12 16 15 O -0.52 -16.77 13.74 -16.75 -0.23 -17.00 16 16 C -0.52 -14.60 8.83 -37.43 -0.33 -14.93 16 17 H 0.07 1.82 6.07 -52.49 -0.32 1.50 16 18 C 0.08 2.22 5.49 -17.31 -0.10 2.12 16 19 N -0.74 -21.57 11.76 55.57 0.65 -20.92 16 20 Si 0.90 19.51 29.57 -169.99 -5.03 14.49 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.18 -2.63 5.43 -26.59 -0.14 -2.78 16 25 C 0.07 0.80 6.84 37.20 0.25 1.06 16 26 O -0.38 -5.12 10.41 -35.23 -0.37 -5.49 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.12 1.75 5.41 -52.49 -0.28 1.46 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.13 2.62 6.23 -52.49 -0.33 2.30 16 36 H 0.27 7.14 8.29 -40.82 -0.34 6.81 16 37 H 0.08 1.10 6.94 -51.93 -0.36 0.73 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -34.01 327.22 -8.60 -42.61 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.40 Total: 4.26 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.84 Total: -16.71 kcal Atomic # 7 Polarization: -21.57 SS G_CDS: 0.65 Total: -20.92 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.92 Total: -28.66 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.01 -8.60 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233528190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.988 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds