Wall clock time and date at job start Tue Mar 31 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.48558 * 2 1 4 4 C 1.53088 * 109.47721 * 120.02694 * 2 1 3 5 5 C 1.53187 * 109.16103 * 177.58770 * 4 2 1 6 6 H 1.09000 * 109.53912 * 62.97389 * 5 4 2 7 7 O 1.42905 * 109.54100 * 183.15329 * 5 4 2 8 8 C 1.35636 * 116.99688 * 204.84884 * 7 5 4 9 9 C 1.38675 * 120.15883 * 354.79388 * 8 7 5 10 10 C 1.38091 * 120.08736 * 180.30080 * 9 8 7 11 11 C 1.38684 * 120.41776 * 359.67941 * 10 9 8 12 12 C 1.37705 * 120.32463 * 0.02562 * 11 10 9 13 13 C 1.39841 * 119.89581 * 0.02562 * 12 11 10 14 14 C 1.47535 * 120.20084 * 179.97438 * 13 12 11 15 15 O 1.21819 * 119.99445 * 179.97438 * 14 13 12 16 16 C 1.41820 * 120.00266 * 359.72520 * 14 13 12 17 17 H 1.08002 * 120.00206 * 353.48580 * 16 14 13 18 18 C 1.40331 * 120.00360 * 173.47772 * 16 14 13 19 19 N 1.30543 * 119.99680 * 6.13584 * 18 16 14 20 20 Si 1.86800 * 120.00365 * 186.12726 * 18 16 14 21 21 H 1.48493 * 109.47038 * 94.98675 * 20 18 16 22 22 H 1.48496 * 109.47117 * 214.99020 * 20 18 16 23 23 H 1.48502 * 109.47019 * 334.98695 * 20 18 16 24 24 C 1.53175 * 109.03595 * 303.01598 * 5 4 2 25 25 C 1.53089 * 109.16110 * 56.98095 * 24 5 4 26 26 O 1.42904 * 109.47547 * 239.96451 * 2 1 3 27 27 H 1.08998 * 109.46934 * 299.97724 * 1 2 3 28 28 H 1.08994 * 109.46771 * 59.97565 * 1 2 3 29 29 H 1.08996 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.52762 * 57.68604 * 4 2 1 31 31 H 1.08996 * 109.57856 * 297.52038 * 4 2 1 32 32 H 1.07994 * 119.95649 * 0.02562 * 9 8 7 33 33 H 1.07996 * 119.78979 * 179.69974 * 10 9 8 34 34 H 1.08007 * 119.83718 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.04868 * 180.02562 * 12 11 10 36 36 H 0.96996 * 119.99925 * 179.97438 * 19 18 16 37 37 H 1.08996 * 109.52161 * 176.88431 * 24 5 4 38 38 H 1.08999 * 109.52455 * 297.07631 * 24 5 4 39 39 H 1.09008 * 109.47873 * 182.40584 * 25 24 5 40 40 H 1.08997 * 109.49110 * 62.38140 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5711 -0.7709 1.2121 6 1 3.9690 0.2434 1.2423 7 8 4.0536 -1.5075 2.3377 8 6 5.3131 -1.2326 2.7594 9 6 6.1116 -0.3540 2.0428 10 6 7.3958 -0.0800 2.4701 11 6 7.8951 -0.6739 3.6196 12 6 7.1150 -1.5443 4.3476 13 6 5.8129 -1.8321 3.9265 14 6 4.9714 -2.7641 4.7010 15 8 3.8374 -3.0118 4.3310 16 6 5.4843 -3.3757 5.8732 17 1 6.5220 -3.2432 6.1417 18 6 4.6436 -4.1530 6.6846 19 7 3.4233 -4.4126 6.3002 20 14 5.2706 -4.8166 8.3143 21 1 4.8814 -3.8909 9.4082 22 1 4.6786 -6.1552 8.5644 23 1 6.7504 -4.9310 8.2657 24 6 4.0176 -1.4603 -0.0808 25 6 3.4307 -0.7096 -1.2790 26 8 2.0065 -0.6744 -1.1664 27 1 -0.3633 0.5135 0.8902 28 1 -0.3633 0.5142 -0.8897 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6443 -1.7374 1.2710 31 1 1.7149 -0.1852 2.1404 32 1 5.7301 0.1132 1.1470 33 1 8.0152 0.6013 1.9057 34 1 8.9008 -0.4526 3.9454 35 1 7.5081 -2.0040 5.2423 36 1 2.8423 -4.9502 6.8608 37 1 5.1058 -1.4501 -0.1420 38 1 3.6612 -2.4904 -0.0862 39 1 3.7099 -1.2207 -2.2004 40 1 3.8193 0.3086 -1.2961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233528190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:57 Heat of formation + Delta-G solvation = -127.069319 kcal Electronic energy + Delta-G solvation = -23343.745548 eV Core-core repulsion = 19894.672265 eV Total energy + Delta-G solvation = -3449.073283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52320 -40.13319 -38.51503 -37.79608 -34.74497 -33.98581 -33.60163 -32.13892 -30.64567 -28.82344 -28.52626 -25.44226 -24.51342 -23.75774 -22.53731 -21.64334 -21.20470 -19.04593 -18.46624 -17.48115 -17.38284 -17.12758 -16.56247 -16.22574 -16.03996 -15.68997 -15.46536 -14.97485 -14.92570 -14.51381 -14.41612 -14.02329 -13.65658 -13.58247 -13.28112 -13.18458 -12.93142 -12.87479 -12.71602 -12.61204 -12.44063 -12.15660 -12.08946 -11.99828 -11.69035 -11.53364 -11.34348 -10.97773 -10.67413 -9.73848 -9.46980 -8.98243 -8.29230 -7.01571 0.25726 0.59954 1.36032 1.37436 1.53790 2.20965 2.28304 2.31235 2.76189 2.90667 3.57078 3.61296 3.78986 3.80211 3.82265 3.96947 4.04418 4.10805 4.18873 4.31920 4.33114 4.39705 4.55910 4.58875 4.62732 4.64938 4.75443 4.84217 4.93010 4.95549 5.03373 5.13191 5.17102 5.22880 5.26044 5.42311 5.54296 5.70906 5.96224 6.07107 6.19648 6.65558 6.73832 6.90356 8.33207 8.55262 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.004815 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.777082 B = 5813.670989 C = 7142.383538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.098 3.902 3 H 0.084 0.916 4 C -0.144 4.144 5 C 0.070 3.930 6 H 0.088 0.912 7 O -0.307 6.307 8 C 0.131 3.869 9 C -0.225 4.225 10 C -0.070 4.070 11 C -0.168 4.168 12 C -0.063 4.063 13 C -0.197 4.197 14 C 0.366 3.634 15 O -0.575 6.575 16 C -0.553 4.553 17 H 0.092 0.908 18 C 0.023 3.977 19 N -0.794 5.794 20 Si 0.995 3.005 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.244 1.244 24 C -0.176 4.176 25 C 0.071 3.929 26 O -0.394 6.394 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.279 0.721 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.118 0.882 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 11.650 -11.183 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.040 3.960 3 H 0.101 0.899 4 C -0.182 4.182 5 C 0.014 3.986 6 H 0.106 0.894 7 O -0.220 6.220 8 C 0.084 3.916 9 C -0.243 4.243 10 C -0.088 4.088 11 C -0.186 4.186 12 C -0.081 4.081 13 C -0.199 4.199 14 C 0.264 3.736 15 O -0.467 6.467 16 C -0.584 4.584 17 H 0.110 0.890 18 C -0.195 4.195 19 N -0.423 5.423 20 Si 0.813 3.187 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.167 1.167 24 C -0.214 4.214 25 C -0.006 4.006 26 O -0.314 6.314 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.183 0.817 34 H 0.175 0.825 35 H 0.150 0.850 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.300 11.257 -11.454 16.395 hybrid contribution 0.117 -0.680 1.100 1.299 sum 3.417 10.577 -10.354 15.190 Atomic orbital electron populations 1.21785 0.91484 1.02916 1.03819 1.22146 0.96366 0.95060 0.82415 0.89868 1.22317 0.93281 1.02137 1.00429 1.22715 0.95220 0.95641 0.85014 0.89385 1.86487 1.27659 1.60822 1.46985 1.19689 0.84661 0.94332 0.92903 1.21438 0.96689 1.03098 1.03108 1.21449 0.93987 0.97796 0.95564 1.21380 1.01290 0.99202 0.96734 1.21483 0.91286 0.96039 0.99305 1.21262 0.98002 1.03837 0.96760 1.18768 0.86840 0.82035 0.86005 1.90483 1.21958 1.63701 1.70566 1.21422 0.98924 1.29325 1.08681 0.88999 1.27267 0.94166 0.94257 1.03806 1.70144 1.08018 1.27083 1.37095 0.85052 0.80212 0.77890 0.75508 1.18436 1.19397 1.16665 1.22766 1.02550 1.00754 0.95293 1.22673 0.79963 1.00636 0.97281 1.87914 1.22073 1.78431 1.42967 0.89761 0.89966 0.92902 0.92916 0.90748 0.83218 0.81657 0.82527 0.84977 0.91061 0.89383 0.92828 0.86449 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.56 71.98 0.69 -2.25 16 2 C 0.10 2.34 3.26 30.63 0.10 2.44 16 3 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.14 -4.68 5.07 30.69 0.16 -4.53 16 5 C 0.07 2.38 2.19 30.72 0.07 2.45 16 6 H 0.09 2.51 6.30 -2.39 -0.02 2.49 16 7 O -0.31 -14.73 7.89 -68.62 -0.54 -15.28 16 8 C 0.13 5.90 6.62 22.90 0.15 6.05 16 9 C -0.22 -7.33 8.29 22.34 0.19 -7.14 16 10 C -0.07 -1.90 10.04 22.34 0.22 -1.68 16 11 C -0.17 -5.06 10.02 22.25 0.22 -4.84 16 12 C -0.06 -2.55 9.43 22.53 0.21 -2.34 16 13 C -0.20 -10.02 5.90 -19.91 -0.12 -10.14 16 14 C 0.37 22.86 6.90 25.61 0.18 23.03 16 15 O -0.57 -40.70 13.74 16.15 0.22 -40.48 16 16 C -0.55 -32.45 8.83 23.67 0.21 -32.24 16 17 H 0.09 4.79 6.07 -2.91 -0.02 4.77 16 18 C 0.02 1.30 5.49 85.39 0.47 1.76 16 19 N -0.79 -49.36 11.76 21.89 0.26 -49.10 16 20 Si 1.00 40.95 29.57 68.60 2.03 42.98 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.24 -9.23 7.11 99.48 0.71 -8.52 16 24 C -0.18 -5.05 5.43 30.68 0.17 -4.88 16 25 C 0.07 1.49 6.84 72.01 0.49 1.98 16 26 O -0.39 -10.09 10.41 -148.98 -1.55 -11.64 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.15 3.82 5.41 -2.91 -0.02 3.80 16 33 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 35 H 0.13 5.20 6.23 -2.91 -0.02 5.18 16 36 H 0.28 15.53 8.29 -92.71 -0.77 14.76 16 37 H 0.09 2.32 6.94 -2.39 -0.02 2.30 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -83.97 327.22 4.87 -79.10 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 1.05 Total: 26.73 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 3.41 Total: -32.32 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.26 Total: -49.10 kcal Atomic # 8 Polarization: -65.52 SS G_CDS: -1.87 Total: -67.39 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -83.97 4.87 -79.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233528190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.965 kcal (2) G-P(sol) polarization free energy of solvation -83.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds