Wall clock time and date at job start Tue Mar 31 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.52306 * 2 1 4 4 C 1.53092 * 109.57151 * 120.15433 * 2 1 3 5 5 O 1.42911 * 109.41089 * 177.54306 * 4 2 1 6 6 C 1.42902 * 114.09834 * 298.84077 * 5 4 2 7 7 C 1.53092 * 109.41299 * 61.15842 * 6 5 4 8 8 C 1.53171 * 109.16495 * 302.38884 * 7 6 5 9 9 H 1.09000 * 109.54655 * 297.11708 * 8 7 6 10 10 O 1.42905 * 109.54341 * 176.93451 * 8 7 6 11 11 C 1.35634 * 116.99546 * 85.02496 * 10 8 7 12 12 C 1.38664 * 120.16219 * 354.49739 * 11 10 8 13 13 C 1.38094 * 120.09163 * 179.74450 * 12 11 10 14 14 C 1.38685 * 120.41395 * 0.56375 * 13 12 11 15 15 C 1.37704 * 120.32407 * 359.69430 * 14 13 12 16 16 C 1.39842 * 119.90053 * 0.02562 * 15 14 13 17 17 C 1.47526 * 120.20668 * 180.02562 * 16 15 14 18 18 O 1.21818 * 120.00068 * 179.97438 * 17 16 15 19 19 C 1.41831 * 120.00252 * 359.97438 * 17 16 15 20 20 H 1.08006 * 119.99412 * 0.02562 * 19 17 16 21 21 C 1.40323 * 120.00199 * 180.02562 * 19 17 16 22 22 N 1.30535 * 120.00096 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99750 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47075 * 90.00253 * 23 21 19 25 25 H 1.48504 * 109.46621 * 210.00121 * 23 21 19 26 26 H 1.48499 * 109.47229 * 329.99797 * 23 21 19 27 27 H 1.09000 * 109.47474 * 180.13260 * 1 2 3 28 28 H 1.09002 * 109.47195 * 300.12701 * 1 2 3 29 29 H 1.09005 * 109.47383 * 60.12858 * 1 2 3 30 30 H 1.08997 * 109.48140 * 57.56707 * 4 2 1 31 31 H 1.08999 * 109.48484 * 297.52397 * 4 2 1 32 32 H 1.09001 * 109.47783 * 181.14207 * 6 5 4 33 33 H 1.09002 * 109.47820 * 301.17619 * 6 5 4 34 34 H 1.09004 * 109.51980 * 62.30177 * 7 6 5 35 35 H 1.08999 * 109.52130 * 182.41976 * 7 6 5 36 36 H 1.07994 * 119.95799 * 0.02562 * 12 11 10 37 37 H 1.08000 * 119.79415 * 180.27834 * 13 12 11 38 38 H 1.08006 * 119.84060 * 179.71647 * 14 13 12 39 39 H 1.08005 * 120.05267 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99944 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0428 -0.7246 1.2473 5 8 3.4707 -0.7728 1.2151 6 6 4.0056 -1.4795 0.0942 7 6 3.5716 -0.7852 -1.1994 8 6 2.0418 -0.7248 -1.2487 9 1 1.6375 -1.7367 -1.2744 10 8 1.6289 -0.0150 -2.4183 11 6 1.5305 -0.7276 -3.5682 12 6 1.9326 -2.0542 -3.6023 13 6 1.8268 -2.7799 -4.7724 14 6 1.3300 -2.1873 -5.9236 15 6 0.9307 -0.8695 -5.9104 16 6 1.0265 -0.1238 -4.7313 17 6 0.6001 1.2883 -4.7094 18 8 0.6848 1.9343 -3.6800 19 6 0.0915 1.8940 -5.8867 20 1 0.0161 1.3211 -6.7992 21 6 -0.3136 3.2373 -5.8660 22 7 -0.2219 3.9297 -4.7633 23 14 -0.9840 4.0346 -7.4166 24 1 -2.4564 3.8500 -7.4712 25 1 -0.6671 5.4854 -7.4038 26 1 -0.3613 3.4024 -8.6073 27 1 -0.3634 -1.0276 0.0024 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5118 -0.8912 30 1 1.6453 -1.7393 1.2674 31 1 1.7172 -0.1886 2.1388 32 1 5.0939 -1.4873 0.1551 33 1 3.6337 -2.5041 0.0993 34 1 3.9772 0.2262 -1.2237 35 1 3.9426 -1.3471 -2.0565 36 1 2.3248 -2.5220 -2.7114 37 1 2.1372 -3.8142 -4.7924 38 1 1.2556 -2.7622 -6.8349 39 1 0.5440 -0.4124 -6.8094 40 1 -0.5016 4.8584 -4.7491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233531715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:04 Heat of formation + Delta-G solvation = -126.683555 kcal Electronic energy + Delta-G solvation = -23660.322432 eV Core-core repulsion = 20211.265877 eV Total energy + Delta-G solvation = -3449.056555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57444 -40.08342 -38.45314 -37.78316 -34.94237 -34.67375 -32.99896 -32.08633 -30.59758 -28.74061 -27.80924 -25.91801 -24.59192 -23.41250 -22.99748 -21.62836 -20.99968 -19.10584 -18.47408 -17.53360 -17.25712 -17.08872 -16.49841 -16.15801 -16.01739 -15.65788 -15.47464 -15.04860 -14.96247 -14.71138 -14.36514 -14.10175 -13.82135 -13.49840 -13.26345 -13.07474 -13.03304 -12.79560 -12.71314 -12.57538 -12.42185 -12.11125 -12.09227 -11.98555 -11.68462 -11.39654 -11.30569 -10.97286 -10.65724 -9.72989 -9.45710 -8.96047 -8.27236 -7.01077 0.26660 0.61128 1.35786 1.37599 1.53013 2.21087 2.29364 2.34740 2.88756 2.91678 3.53167 3.60965 3.77335 3.81295 3.84130 3.98172 4.05094 4.15940 4.21028 4.33297 4.35711 4.45707 4.53923 4.56296 4.64363 4.65038 4.72368 4.82900 4.87980 4.99213 5.03498 5.15905 5.19506 5.23123 5.27909 5.43739 5.54909 5.71626 5.96556 6.07831 6.15555 6.67720 6.74674 6.91799 8.34524 8.56571 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.005144 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.268647 B = 5441.498703 C = 6565.785533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 H 0.055 0.945 4 C 0.078 3.922 5 O -0.398 6.398 6 C 0.070 3.930 7 C -0.178 4.178 8 C 0.075 3.925 9 H 0.087 0.913 10 O -0.301 6.301 11 C 0.133 3.867 12 C -0.226 4.226 13 C -0.071 4.071 14 C -0.169 4.169 15 C -0.064 4.064 16 C -0.196 4.196 17 C 0.366 3.634 18 O -0.572 6.572 19 C -0.552 4.552 20 H 0.091 0.909 21 C 0.023 3.977 22 N -0.793 5.793 23 Si 0.993 3.007 24 H -0.258 1.258 25 H -0.270 1.270 26 H -0.245 1.245 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -15.105 5.047 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.139 4.139 3 H 0.073 0.927 4 C 0.002 3.998 5 O -0.316 6.316 6 C -0.007 4.007 7 C -0.216 4.216 8 C 0.019 3.981 9 H 0.104 0.896 10 O -0.213 6.213 11 C 0.086 3.914 12 C -0.244 4.244 13 C -0.088 4.088 14 C -0.187 4.187 15 C -0.082 4.082 16 C -0.198 4.198 17 C 0.264 3.736 18 O -0.464 6.464 19 C -0.583 4.583 20 H 0.109 0.891 21 C -0.195 4.195 22 N -0.423 5.423 23 Si 0.812 3.188 24 H -0.183 1.183 25 H -0.195 1.195 26 H -0.168 1.168 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.174 0.826 39 H 0.149 0.851 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.504 -14.386 5.861 16.174 hybrid contribution -0.499 0.893 -0.934 1.385 sum 4.006 -13.493 4.926 14.912 Atomic orbital electron populations 1.21619 0.93781 1.02457 1.01640 1.21865 0.97337 1.00314 0.94382 0.92689 1.22735 0.80214 1.00703 0.96189 1.87910 1.21020 1.76980 1.45722 1.22693 1.00472 0.94849 0.82645 1.22796 0.95153 1.02467 1.01199 1.22745 0.94846 0.96274 0.84248 0.89561 1.86487 1.81752 1.37522 1.15550 1.19670 0.94264 0.91273 0.86163 1.21434 1.08824 0.92558 1.01611 1.21440 0.95737 1.00599 0.91057 1.21363 1.02877 0.94276 1.00193 1.21483 0.96142 0.94471 0.96141 1.21255 1.05946 0.99102 0.93518 1.18742 0.79846 0.85581 0.89454 1.90487 1.55164 1.65341 1.35376 1.21423 1.40544 0.97475 0.98905 0.89117 1.27237 0.93523 0.97801 1.00900 1.70139 1.33057 1.09083 1.30003 0.85087 0.79237 0.77395 0.77090 1.18263 1.19475 1.16829 0.90920 0.90494 0.95741 0.90342 0.86613 0.86589 0.90315 0.92862 0.89470 0.83290 0.81746 0.82634 0.85076 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.09 71.98 0.65 -3.70 16 2 C -0.12 -3.78 2.64 -10.70 -0.03 -3.81 16 3 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.08 1.75 6.13 72.01 0.44 2.19 16 5 O -0.40 -9.89 10.77 -148.98 -1.60 -11.49 16 6 C 0.07 1.44 6.84 72.01 0.49 1.94 16 7 C -0.18 -5.07 5.42 30.68 0.17 -4.91 16 8 C 0.07 2.50 1.59 30.71 0.05 2.55 16 9 H 0.09 2.44 6.33 -2.39 -0.02 2.42 16 10 O -0.30 -14.19 7.37 -68.60 -0.51 -14.69 16 11 C 0.13 5.95 6.62 22.90 0.15 6.10 16 12 C -0.23 -7.33 8.28 22.34 0.18 -7.15 16 13 C -0.07 -1.92 10.04 22.34 0.22 -1.69 16 14 C -0.17 -5.12 10.02 22.25 0.22 -4.89 16 15 C -0.06 -2.61 9.43 22.53 0.21 -2.40 16 16 C -0.20 -9.96 5.90 -19.91 -0.12 -10.08 16 17 C 0.37 22.78 6.91 25.61 0.18 22.95 16 18 O -0.57 -40.16 13.72 16.15 0.22 -39.94 16 19 C -0.55 -32.41 8.86 23.67 0.21 -32.20 16 20 H 0.09 4.73 6.02 -2.91 -0.02 4.71 16 21 C 0.02 1.31 5.50 85.39 0.47 1.78 16 22 N -0.79 -49.27 11.73 21.88 0.26 -49.01 16 23 Si 0.99 41.03 29.56 68.60 2.03 43.05 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.02 1.02 7.78 -2.38 -0.02 1.00 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.09 2.29 6.90 -2.39 -0.02 2.28 16 36 H 0.15 3.80 5.39 -2.91 -0.02 3.78 16 37 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.13 5.18 6.20 -2.91 -0.02 5.16 16 40 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -83.63 325.90 4.96 -78.67 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 1.05 Total: 26.71 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.51 Total: -33.31 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.26 Total: -49.01 kcal Atomic # 8 Polarization: -64.23 SS G_CDS: -1.89 Total: -66.12 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -83.63 4.96 -78.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233531715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.009 kcal (2) G-P(sol) polarization free energy of solvation -83.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds