Wall clock time and date at job start Tue Mar 31 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.57458 * 2 1 4 4 C 1.53088 * 109.52625 * 239.84770 * 2 1 3 5 5 O 1.42909 * 109.41480 * 297.70260 * 4 2 1 6 6 C 1.42901 * 114.09440 * 298.83992 * 5 4 2 7 7 C 1.53098 * 109.41560 * 61.16006 * 6 5 4 8 8 C 1.53180 * 109.21038 * 302.35627 * 7 6 5 9 9 H 1.08993 * 109.54629 * 297.14809 * 8 7 6 10 10 O 1.42900 * 109.54461 * 176.87852 * 8 7 6 11 11 C 1.35641 * 117.00044 * 85.08653 * 10 8 7 12 12 C 1.38669 * 120.15734 * 354.48960 * 11 10 8 13 13 C 1.38093 * 120.09055 * 179.97438 * 12 11 10 14 14 C 1.38687 * 120.41430 * 359.97438 * 13 12 11 15 15 C 1.37700 * 120.32315 * 0.02562 * 14 13 12 16 16 C 1.39846 * 119.90158 * 359.72890 * 15 14 13 17 17 C 1.47533 * 120.20937 * 180.27742 * 16 15 14 18 18 O 1.21813 * 120.00343 * 180.25408 * 17 16 15 19 19 C 1.41838 * 119.99722 * 0.24487 * 17 16 15 20 20 H 1.08000 * 119.99611 * 0.02562 * 19 17 16 21 21 C 1.40325 * 119.99706 * 180.02562 * 19 17 16 22 22 N 1.30535 * 120.00188 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99728 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46940 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47234 * 119.99854 * 23 21 19 26 26 H 1.48501 * 109.47011 * 240.00266 * 23 21 19 27 27 H 1.09000 * 109.46887 * 180.14893 * 1 2 3 28 28 H 1.08997 * 109.47687 * 300.15834 * 1 2 3 29 29 H 1.09001 * 109.47287 * 60.15724 * 1 2 3 30 30 H 1.08998 * 109.48590 * 177.72135 * 4 2 1 31 31 H 1.09005 * 109.49322 * 57.68672 * 4 2 1 32 32 H 1.09001 * 109.48531 * 301.17789 * 6 5 4 33 33 H 1.09001 * 109.48697 * 181.14145 * 6 5 4 34 34 H 1.08996 * 109.52287 * 62.29432 * 7 6 5 35 35 H 1.08999 * 109.52423 * 182.42193 * 7 6 5 36 36 H 1.08002 * 119.95484 * 359.97278 * 12 11 10 37 37 H 1.07997 * 119.79136 * 179.97438 * 13 12 11 38 38 H 1.07999 * 119.83921 * 180.02562 * 14 13 12 39 39 H 1.08009 * 120.04815 * 180.02562 * 15 14 13 40 40 H 0.97004 * 120.00321 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0416 -0.7247 -1.2476 5 8 1.6099 -2.0867 -1.2164 6 6 2.0971 -2.8276 -0.0959 7 6 1.5877 -2.1874 1.1981 8 6 2.0419 -0.7254 1.2498 9 1 3.1307 -0.6825 1.2756 10 8 1.5094 -0.1004 2.4194 11 6 2.2128 -0.2461 3.5700 12 6 3.3293 -1.0677 3.6046 13 6 4.0448 -1.2146 4.7766 14 6 3.6549 -0.5435 5.9260 15 6 2.5489 0.2766 5.9108 16 6 1.8176 0.4391 4.7299 17 6 0.6351 1.3210 4.7045 18 8 -0.0019 1.4561 3.6750 19 6 0.2398 2.0112 5.8788 20 1 0.8048 1.8915 6.7914 21 6 -0.8852 2.8496 5.8547 22 7 -1.5683 2.9938 4.7517 23 14 -1.4054 3.7592 7.4012 24 1 -0.4725 3.4275 8.5079 25 1 -1.3746 5.2223 7.1489 26 1 -2.7828 3.3504 7.7762 27 1 -0.3633 -1.0277 0.0027 28 1 -0.3634 0.5163 0.8885 29 1 -0.3634 0.5114 -0.8914 30 1 3.1308 -0.6892 -1.2677 31 1 1.6455 -0.2382 -2.1390 32 1 3.1871 -2.8195 -0.1008 33 1 1.7409 -3.8560 -0.1573 34 1 0.4989 -2.2316 1.2222 35 1 1.9932 -2.7253 2.0549 36 1 3.6398 -1.5935 2.7137 37 1 4.9133 -1.8560 4.7982 38 1 4.2214 -0.6648 6.8374 39 1 2.2494 0.7974 6.8084 40 1 -2.3462 3.5730 4.7352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233531716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:07 Heat of formation + Delta-G solvation = -102.793057 kcal Electronic energy + Delta-G solvation = -23727.135981 eV Core-core repulsion = 20279.115396 eV Total energy + Delta-G solvation = -3448.020586 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29262 -38.83011 -36.82967 -35.96569 -33.47736 -32.58002 -31.64852 -30.49577 -29.10005 -26.84396 -26.55535 -24.75785 -23.13825 -22.79837 -21.48521 -19.75162 -18.97500 -17.55746 -16.70645 -16.31723 -16.01131 -15.44394 -15.23039 -14.87083 -14.55374 -14.47048 -14.28158 -13.49782 -13.27769 -13.04339 -12.89919 -12.57131 -12.33846 -11.95757 -11.71627 -11.48730 -11.41666 -11.31375 -11.19725 -11.15389 -10.90413 -10.77394 -10.46503 -10.30377 -10.15585 -10.04782 -9.98305 -9.54453 -8.93559 -8.19848 -7.42491 -7.32775 -6.21456 -4.81576 1.80877 2.07330 3.06565 3.15693 3.19768 3.66339 3.87566 4.04840 4.09059 4.65263 4.72932 4.81452 4.94196 5.03829 5.13036 5.28846 5.34406 5.38837 5.45588 5.58852 5.60617 5.68071 5.79824 5.88077 5.90365 5.92124 5.99211 6.14172 6.24045 6.31158 6.35652 6.54017 6.69861 6.89723 6.94295 6.95498 7.14184 7.17134 7.31554 7.49326 8.09812 8.16458 8.86799 8.91878 10.39966 10.63576 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.005236 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.278231 B = 5346.374594 C = 6671.324119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 H 0.086 0.914 4 C 0.069 3.931 5 O -0.379 6.379 6 C 0.067 3.933 7 C -0.184 4.184 8 C 0.084 3.916 9 H 0.064 0.936 10 O -0.256 6.256 11 C 0.150 3.850 12 C -0.231 4.231 13 C -0.093 4.093 14 C -0.176 4.176 15 C -0.059 4.059 16 C -0.137 4.137 17 C 0.391 3.609 18 O -0.516 6.516 19 C -0.522 4.522 20 H 0.072 0.928 21 C 0.081 3.919 22 N -0.737 5.737 23 Si 0.903 3.097 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.650 -7.950 -5.798 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.137 4.137 3 H 0.105 0.895 4 C -0.008 4.008 5 O -0.298 6.298 6 C -0.010 4.010 7 C -0.222 4.222 8 C 0.027 3.973 9 H 0.082 0.918 10 O -0.167 6.167 11 C 0.104 3.896 12 C -0.250 4.250 13 C -0.112 4.112 14 C -0.195 4.195 15 C -0.077 4.077 16 C -0.138 4.138 17 C 0.284 3.716 18 O -0.404 6.404 19 C -0.553 4.553 20 H 0.090 0.910 21 C -0.141 4.141 22 N -0.367 5.367 23 Si 0.727 3.273 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.906 -7.810 -6.620 12.936 hybrid contribution 0.367 0.339 1.198 1.298 sum 8.273 -7.471 -5.422 12.395 Atomic orbital electron populations 1.21727 0.92961 1.02230 1.02921 1.21821 0.99079 1.00158 0.92617 0.89530 1.22657 0.98048 0.82177 0.97900 1.87914 1.74192 1.22503 1.45181 1.22523 0.97692 0.95677 0.85136 1.22837 1.04193 0.96384 0.98770 1.22358 0.97233 0.91927 0.85797 0.91767 1.86530 1.46571 1.69682 1.13935 1.19434 0.90061 0.93293 0.86849 1.21104 0.99157 1.05302 0.99444 1.20804 0.98714 0.99007 0.92626 1.20943 0.99310 1.01176 0.98045 1.21415 0.93009 0.95698 0.97594 1.21571 1.01477 1.00377 0.90420 1.17988 0.82239 0.81533 0.89820 1.90537 1.53404 1.62718 1.33696 1.20934 1.10914 1.25144 0.98344 0.91017 1.25945 0.95668 0.95803 0.96710 1.69974 1.12647 1.27471 1.26568 0.86382 0.79148 0.79461 0.82310 1.18456 1.19940 1.19938 0.92530 0.89859 0.93312 0.93331 0.88259 0.93364 0.88646 0.89352 0.90416 0.86419 0.87000 0.86810 0.84801 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.61 37.16 0.32 -2.05 16 2 C -0.12 -1.78 2.99 -90.42 -0.27 -2.05 16 3 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 4 C 0.07 0.83 6.25 37.20 0.23 1.06 16 5 O -0.38 -5.00 10.19 -35.23 -0.36 -5.36 16 6 C 0.07 0.77 6.84 37.21 0.25 1.03 16 7 C -0.18 -2.62 5.06 -26.59 -0.13 -2.75 16 8 C 0.08 1.37 1.88 -26.48 -0.05 1.32 16 9 H 0.06 0.96 6.33 -51.93 -0.33 0.63 16 10 O -0.26 -5.60 7.12 -40.46 -0.29 -5.89 16 11 C 0.15 3.26 6.62 -38.61 -0.26 3.00 16 12 C -0.23 -4.04 8.28 -39.48 -0.33 -4.37 16 13 C -0.09 -1.49 10.04 -39.47 -0.40 -1.89 16 14 C -0.18 -2.98 10.02 -39.61 -0.40 -3.38 16 15 C -0.06 -1.20 9.43 -39.18 -0.37 -1.57 16 16 C -0.14 -3.29 5.90 -104.69 -0.62 -3.90 16 17 C 0.39 11.20 6.91 -34.42 -0.24 10.96 16 18 O -0.52 -16.37 13.72 -16.75 -0.23 -16.60 16 19 C -0.52 -14.45 8.86 -37.42 -0.33 -14.78 16 20 H 0.07 1.80 6.02 -52.49 -0.32 1.49 16 21 C 0.08 2.20 5.50 -17.32 -0.10 2.11 16 22 N -0.74 -21.35 11.73 55.57 0.65 -20.70 16 23 Si 0.90 19.43 29.56 -169.99 -5.03 14.41 16 24 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H 0.06 0.93 6.13 -51.93 -0.32 0.61 16 28 H 0.08 1.76 7.63 -51.93 -0.40 1.37 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.41 6.62 -51.93 -0.34 1.06 16 35 H 0.08 1.07 6.90 -51.93 -0.36 0.71 16 36 H 0.12 1.74 5.39 -52.49 -0.28 1.45 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.13 2.61 6.21 -52.48 -0.33 2.29 16 40 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -33.12 321.32 -8.27 -41.38 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.19 Total: 5.17 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.67 Total: -17.26 kcal Atomic # 7 Polarization: -21.35 SS G_CDS: 0.65 Total: -20.70 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.88 Total: -27.84 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.12 -8.27 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233531716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.408 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds