Wall clock time and date at job start Tue Mar 31 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.57458 * 2 1 4 4 C 1.53088 * 109.52625 * 239.84770 * 2 1 3 5 5 O 1.42909 * 109.41480 * 297.70260 * 4 2 1 6 6 C 1.42901 * 114.09440 * 298.83992 * 5 4 2 7 7 C 1.53098 * 109.41560 * 61.16006 * 6 5 4 8 8 C 1.53180 * 109.21038 * 302.35627 * 7 6 5 9 9 H 1.08993 * 109.54629 * 297.14809 * 8 7 6 10 10 O 1.42900 * 109.54461 * 176.87852 * 8 7 6 11 11 C 1.35641 * 117.00044 * 85.08653 * 10 8 7 12 12 C 1.38669 * 120.15734 * 354.48960 * 11 10 8 13 13 C 1.38093 * 120.09055 * 179.97438 * 12 11 10 14 14 C 1.38687 * 120.41430 * 359.97438 * 13 12 11 15 15 C 1.37700 * 120.32315 * 0.02562 * 14 13 12 16 16 C 1.39846 * 119.90158 * 359.72890 * 15 14 13 17 17 C 1.47533 * 120.20937 * 180.27742 * 16 15 14 18 18 O 1.21813 * 120.00343 * 180.25408 * 17 16 15 19 19 C 1.41838 * 119.99722 * 0.24487 * 17 16 15 20 20 H 1.08000 * 119.99611 * 0.02562 * 19 17 16 21 21 C 1.40325 * 119.99706 * 180.02562 * 19 17 16 22 22 N 1.30535 * 120.00188 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99728 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46940 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47234 * 119.99854 * 23 21 19 26 26 H 1.48501 * 109.47011 * 240.00266 * 23 21 19 27 27 H 1.09000 * 109.46887 * 180.14893 * 1 2 3 28 28 H 1.08997 * 109.47687 * 300.15834 * 1 2 3 29 29 H 1.09001 * 109.47287 * 60.15724 * 1 2 3 30 30 H 1.08998 * 109.48590 * 177.72135 * 4 2 1 31 31 H 1.09005 * 109.49322 * 57.68672 * 4 2 1 32 32 H 1.09001 * 109.48531 * 301.17789 * 6 5 4 33 33 H 1.09001 * 109.48697 * 181.14145 * 6 5 4 34 34 H 1.08996 * 109.52287 * 62.29432 * 7 6 5 35 35 H 1.08999 * 109.52423 * 182.42193 * 7 6 5 36 36 H 1.08002 * 119.95484 * 359.97278 * 12 11 10 37 37 H 1.07997 * 119.79136 * 179.97438 * 13 12 11 38 38 H 1.07999 * 119.83921 * 180.02562 * 14 13 12 39 39 H 1.08009 * 120.04815 * 180.02562 * 15 14 13 40 40 H 0.97004 * 120.00321 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0416 -0.7247 -1.2476 5 8 1.6099 -2.0867 -1.2164 6 6 2.0971 -2.8276 -0.0959 7 6 1.5877 -2.1874 1.1981 8 6 2.0419 -0.7254 1.2498 9 1 3.1307 -0.6825 1.2756 10 8 1.5094 -0.1004 2.4194 11 6 2.2128 -0.2461 3.5700 12 6 3.3293 -1.0677 3.6046 13 6 4.0448 -1.2146 4.7766 14 6 3.6549 -0.5435 5.9260 15 6 2.5489 0.2766 5.9108 16 6 1.8176 0.4391 4.7299 17 6 0.6351 1.3210 4.7045 18 8 -0.0019 1.4561 3.6750 19 6 0.2398 2.0112 5.8788 20 1 0.8048 1.8915 6.7914 21 6 -0.8852 2.8496 5.8547 22 7 -1.5683 2.9938 4.7517 23 14 -1.4054 3.7592 7.4012 24 1 -0.4725 3.4275 8.5079 25 1 -1.3746 5.2223 7.1489 26 1 -2.7828 3.3504 7.7762 27 1 -0.3633 -1.0277 0.0027 28 1 -0.3634 0.5163 0.8885 29 1 -0.3634 0.5114 -0.8914 30 1 3.1308 -0.6892 -1.2677 31 1 1.6455 -0.2382 -2.1390 32 1 3.1871 -2.8195 -0.1008 33 1 1.7409 -3.8560 -0.1573 34 1 0.4989 -2.2316 1.2222 35 1 1.9932 -2.7253 2.0549 36 1 3.6398 -1.5935 2.7137 37 1 4.9133 -1.8560 4.7982 38 1 4.2214 -0.6648 6.8374 39 1 2.2494 0.7974 6.8084 40 1 -2.3462 3.5730 4.7352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233531716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:06 Heat of formation + Delta-G solvation = -123.623197 kcal Electronic energy + Delta-G solvation = -23728.039244 eV Core-core repulsion = 20279.115396 eV Total energy + Delta-G solvation = -3448.923848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60752 -40.14695 -38.43687 -37.76857 -34.80313 -34.59089 -32.79591 -32.05874 -30.57703 -28.74394 -27.92851 -25.89778 -24.58484 -24.12699 -22.92691 -21.52262 -20.20961 -19.03430 -18.45737 -17.71335 -17.24783 -17.04496 -16.42733 -16.20023 -16.07335 -15.75963 -15.63630 -14.97472 -14.95204 -14.51235 -14.47078 -13.97069 -13.76280 -13.64010 -13.26055 -13.02787 -12.91071 -12.69955 -12.65938 -12.58302 -12.39940 -12.18239 -12.06428 -11.93608 -11.67102 -11.38830 -11.17652 -10.98204 -10.59610 -9.72459 -9.44432 -8.95490 -8.26622 -7.00106 0.27064 0.61410 1.36079 1.36227 1.54441 2.21334 2.29855 2.36543 2.91725 2.92090 3.55807 3.63698 3.81236 3.82370 3.87153 3.99727 4.05154 4.13816 4.24037 4.33719 4.44135 4.45706 4.56465 4.62729 4.65247 4.69953 4.71988 4.82537 4.89513 5.01698 5.07204 5.17820 5.21565 5.24079 5.39807 5.44410 5.55259 5.71942 5.97400 6.08308 6.19323 6.68448 6.75591 6.92395 8.35211 8.57246 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.005236 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.278231 B = 5346.374594 C = 6671.324119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.120 4.120 3 H 0.076 0.924 4 C 0.077 3.923 5 O -0.392 6.392 6 C 0.070 3.930 7 C -0.177 4.177 8 C 0.074 3.926 9 H 0.085 0.915 10 O -0.298 6.298 11 C 0.131 3.869 12 C -0.226 4.226 13 C -0.071 4.071 14 C -0.169 4.169 15 C -0.064 4.064 16 C -0.196 4.196 17 C 0.366 3.634 18 O -0.569 6.569 19 C -0.552 4.552 20 H 0.090 0.910 21 C 0.024 3.976 22 N -0.793 5.793 23 Si 0.993 3.007 24 H -0.243 1.243 25 H -0.265 1.265 26 H -0.266 1.266 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 -9.759 -5.072 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.139 4.139 3 H 0.094 0.906 4 C 0.001 3.999 5 O -0.311 6.311 6 C -0.007 4.007 7 C -0.215 4.215 8 C 0.018 3.982 9 H 0.102 0.898 10 O -0.211 6.211 11 C 0.085 3.915 12 C -0.244 4.244 13 C -0.089 4.089 14 C -0.187 4.187 15 C -0.083 4.083 16 C -0.198 4.198 17 C 0.263 3.737 18 O -0.460 6.460 19 C -0.583 4.583 20 H 0.108 0.892 21 C -0.194 4.194 22 N -0.422 5.422 23 Si 0.811 3.189 24 H -0.166 1.166 25 H -0.190 1.190 26 H -0.191 1.191 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.178 -9.638 -5.886 15.890 hybrid contribution -0.563 0.820 0.938 1.368 sum 10.615 -8.818 -4.948 14.660 Atomic orbital electron populations 1.21582 0.95015 1.01502 1.00808 1.21905 0.97326 1.00352 0.94330 0.90604 1.22697 0.99549 0.81434 0.96251 1.87909 1.74811 1.22789 1.45547 1.22672 0.99237 0.95934 0.82817 1.22785 1.02430 0.95283 1.01010 1.22725 0.98251 0.92974 0.84292 0.89750 1.86501 1.48222 1.70927 1.15426 1.19689 0.91440 0.94097 0.86292 1.21438 0.97378 1.04021 1.01553 1.21436 0.98895 0.97484 0.91080 1.21358 0.97779 0.99385 1.00216 1.21479 0.94038 0.96618 0.96126 1.21260 1.01973 1.02993 0.93550 1.18744 0.83485 0.81980 0.89460 1.90483 1.55645 1.64740 1.35178 1.21443 1.11983 1.25878 0.99021 0.89187 1.27219 0.95107 0.96298 1.00794 1.70140 1.13547 1.28728 1.29822 0.85050 0.78996 0.77732 0.77088 1.16603 1.19010 1.19088 0.92499 0.95664 0.91561 0.90594 0.86634 0.90557 0.86692 0.92312 0.89788 0.83271 0.81801 0.82688 0.85123 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.61 71.98 0.62 -4.18 16 2 C -0.12 -3.72 2.99 -10.66 -0.03 -3.75 16 3 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 4 C 0.08 1.70 6.25 72.01 0.45 2.15 16 5 O -0.39 -9.38 10.19 -148.98 -1.52 -10.90 16 6 C 0.07 1.41 6.84 72.01 0.49 1.90 16 7 C -0.18 -4.93 5.06 30.69 0.16 -4.78 16 8 C 0.07 2.42 1.88 30.76 0.06 2.48 16 9 H 0.08 2.36 6.33 -2.39 -0.02 2.35 16 10 O -0.30 -13.92 7.12 -68.68 -0.49 -14.41 16 11 C 0.13 5.86 6.62 22.90 0.15 6.01 16 12 C -0.23 -7.31 8.28 22.34 0.18 -7.13 16 13 C -0.07 -1.94 10.04 22.34 0.22 -1.71 16 14 C -0.17 -5.14 10.02 22.25 0.22 -4.92 16 15 C -0.06 -2.62 9.43 22.53 0.21 -2.41 16 16 C -0.20 -9.91 5.90 -19.91 -0.12 -10.03 16 17 C 0.37 22.66 6.91 25.61 0.18 22.84 16 18 O -0.57 -39.61 13.72 16.16 0.22 -39.39 16 19 C -0.55 -32.32 8.86 23.67 0.21 -32.11 16 20 H 0.09 4.70 6.02 -2.91 -0.02 4.69 16 21 C 0.02 1.33 5.50 85.39 0.47 1.80 16 22 N -0.79 -49.04 11.73 21.88 0.26 -48.79 16 23 Si 0.99 41.01 29.56 68.60 2.03 43.04 16 24 H -0.24 -9.24 7.11 99.48 0.71 -8.53 16 25 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 26 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 27 H 0.06 2.01 6.13 -2.39 -0.01 1.99 16 28 H 0.02 1.18 7.63 -2.39 -0.02 1.16 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.96 6.62 -2.39 -0.02 1.95 16 35 H 0.08 2.19 6.90 -2.39 -0.02 2.17 16 36 H 0.15 3.79 5.39 -2.91 -0.02 3.78 16 37 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.13 5.18 6.21 -2.91 -0.02 5.16 16 40 H 0.28 15.41 8.29 -92.71 -0.77 14.64 16 Total: -1.00 -82.39 321.32 5.04 -77.35 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 1.06 Total: 26.90 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.48 Total: -33.82 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.26 Total: -48.79 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -1.79 Total: -64.69 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -82.39 5.04 -77.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233531716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.268 kcal (2) G-P(sol) polarization free energy of solvation -82.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds