Wall clock time and date at job start Tue Mar 31 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.57560 * 2 1 4 4 C 1.53110 * 109.45421 * 120.20513 * 2 1 3 5 5 O 1.42905 * 109.48250 * 62.38504 * 4 2 1 6 6 C 1.42908 * 114.10016 * 61.11432 * 5 4 2 7 7 C 1.53092 * 109.40926 * 298.84086 * 6 5 4 8 8 C 1.53176 * 109.16537 * 57.61128 * 7 6 5 9 9 H 1.08996 * 109.54865 * 62.97466 * 8 7 6 10 10 O 1.42904 * 109.53886 * 183.14974 * 8 7 6 11 11 C 1.35632 * 117.00174 * 274.87898 * 10 8 7 12 12 C 1.38673 * 120.16028 * 5.47357 * 11 10 8 13 13 C 1.38084 * 120.09126 * 180.02562 * 12 11 10 14 14 C 1.38681 * 120.41890 * 359.97438 * 13 12 11 15 15 C 1.37703 * 120.32495 * 359.97438 * 14 13 12 16 16 C 1.39851 * 119.89526 * 0.02562 * 15 14 13 17 17 C 1.47525 * 120.20261 * 179.97438 * 16 15 14 18 18 O 1.21810 * 120.00095 * 180.02562 * 17 16 15 19 19 C 1.41838 * 120.00144 * 359.97438 * 17 16 15 20 20 H 1.08001 * 119.99693 * 359.97438 * 19 17 16 21 21 C 1.40322 * 119.99862 * 180.02562 * 19 17 16 22 22 N 1.30540 * 120.00421 * 0.02562 * 21 19 17 23 23 Si 1.86807 * 119.99790 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47017 * 89.99985 * 23 21 19 25 25 H 1.48506 * 109.47033 * 210.00247 * 23 21 19 26 26 H 1.48498 * 109.46819 * 329.99822 * 23 21 19 27 27 H 1.08997 * 109.46760 * 180.15910 * 1 2 3 28 28 H 1.08998 * 109.46878 * 300.15720 * 1 2 3 29 29 H 1.08993 * 109.46917 * 60.15494 * 1 2 3 30 30 H 1.08995 * 109.48331 * 302.35752 * 4 2 1 31 31 H 1.09000 * 109.41642 * 182.36796 * 4 2 1 32 32 H 1.09000 * 109.47859 * 178.85859 * 6 5 4 33 33 H 1.08997 * 109.47712 * 58.81815 * 6 5 4 34 34 H 1.08998 * 109.52263 * 297.69976 * 7 6 5 35 35 H 1.09003 * 109.56624 * 177.54834 * 7 6 5 36 36 H 1.07998 * 119.95085 * 0.02718 * 12 11 10 37 37 H 1.08003 * 119.78691 * 179.97438 * 13 12 11 38 38 H 1.08008 * 119.83965 * 179.71633 * 14 13 12 39 39 H 1.08000 * 120.05170 * 179.97438 * 15 14 13 40 40 H 0.96999 * 120.00377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0399 -0.7263 1.2477 5 8 1.6099 -2.0887 1.2152 6 6 2.0988 -2.8285 0.0946 7 6 1.5895 -2.1879 -1.1993 8 6 2.0420 -0.7253 -1.2482 9 1 3.1307 -0.6811 -1.2750 10 8 1.5093 -0.0991 -2.4171 11 6 2.2140 -0.2414 -3.5673 12 6 3.3325 -1.0604 -3.6023 13 6 4.0491 -1.2037 -4.7739 14 6 3.6580 -0.5328 -5.9229 15 6 2.5495 0.2840 -5.9077 16 6 1.8139 0.4389 -4.7284 17 6 0.6254 1.3127 -4.7044 18 8 -0.0123 1.4453 -3.6752 19 6 0.2261 1.9992 -5.8796 20 1 0.7923 1.8826 -6.7919 21 6 -0.9040 2.8307 -5.8565 22 7 -1.5875 2.9729 -4.7535 23 14 -1.4304 3.7343 -7.4045 24 1 -2.3765 2.8875 -8.1744 25 1 -2.0968 5.0081 -7.0317 26 1 -0.2363 4.0259 -8.2377 27 1 -0.3633 -1.0277 0.0029 28 1 -0.3633 0.5163 0.8886 29 1 -0.3633 0.5114 -0.8913 30 1 1.6425 -0.2408 2.1389 31 1 3.1291 -0.6894 1.2687 32 1 1.7437 -3.8572 0.1552 33 1 3.1887 -2.8189 0.1003 34 1 0.5008 -2.2335 -1.2242 35 1 1.9963 -2.7240 -2.0568 36 1 3.6435 -1.5867 -2.7121 37 1 4.9197 -1.8425 -4.7956 38 1 4.2281 -0.6481 -6.8330 39 1 2.2491 0.8048 -6.8049 40 1 -2.3685 3.5480 -4.7375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233531717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:09 Heat of formation + Delta-G solvation = -102.822119 kcal Electronic energy + Delta-G solvation = -23728.792431 eV Core-core repulsion = 20280.770585 eV Total energy + Delta-G solvation = -3448.021846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29662 -38.82995 -36.83066 -35.96548 -33.48040 -32.57826 -31.64964 -30.49617 -29.09943 -26.84283 -26.55387 -24.75842 -23.14114 -22.79941 -21.48514 -19.75109 -18.97227 -17.55773 -16.70561 -16.31634 -16.01183 -15.44143 -15.23064 -14.86727 -14.55707 -14.47313 -14.28120 -13.49680 -13.28092 -13.04145 -12.89804 -12.56962 -12.33726 -11.95648 -11.71702 -11.48529 -11.41155 -11.31771 -11.19870 -11.15159 -10.88424 -10.78315 -10.47402 -10.30775 -10.15871 -10.05733 -9.98557 -9.54373 -8.92630 -8.19825 -7.42357 -7.32828 -6.21229 -4.81517 1.80940 2.07391 3.07941 3.15530 3.18531 3.66457 3.87588 4.04904 4.09104 4.65419 4.73172 4.81343 4.94084 5.03807 5.13093 5.28856 5.34394 5.38850 5.45617 5.58838 5.60675 5.68051 5.79932 5.88161 5.90421 5.92139 5.99294 6.14249 6.24115 6.31333 6.35625 6.54041 6.69894 6.89916 6.94393 6.95554 7.14221 7.17132 7.31571 7.49332 8.09400 8.16485 8.86797 8.91953 10.40183 10.63714 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.005238 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.799234 B = 5344.116159 C = 6668.034170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 H 0.087 0.913 4 C 0.069 3.931 5 O -0.379 6.379 6 C 0.067 3.933 7 C -0.184 4.184 8 C 0.084 3.916 9 H 0.064 0.936 10 O -0.256 6.256 11 C 0.150 3.850 12 C -0.231 4.231 13 C -0.093 4.093 14 C -0.176 4.176 15 C -0.059 4.059 16 C -0.137 4.137 17 C 0.391 3.609 18 O -0.516 6.516 19 C -0.522 4.522 20 H 0.071 0.929 21 C 0.081 3.919 22 N -0.738 5.738 23 Si 0.903 3.097 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.262 1.262 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 -7.899 5.809 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 H 0.105 0.895 4 C -0.008 4.008 5 O -0.298 6.298 6 C -0.010 4.010 7 C -0.222 4.222 8 C 0.027 3.973 9 H 0.082 0.918 10 O -0.167 6.167 11 C 0.104 3.896 12 C -0.250 4.250 13 C -0.111 4.111 14 C -0.195 4.195 15 C -0.077 4.077 16 C -0.138 4.138 17 C 0.284 3.716 18 O -0.404 6.404 19 C -0.554 4.554 20 H 0.089 0.911 21 C -0.141 4.141 22 N -0.367 5.367 23 Si 0.727 3.273 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.186 1.186 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.935 -7.756 6.634 12.928 hybrid contribution 0.369 0.332 -1.210 1.307 sum 8.304 -7.424 5.425 12.389 Atomic orbital electron populations 1.21728 0.92961 1.02211 1.02954 1.21804 0.99097 1.00147 0.92633 0.89508 1.22656 0.98062 0.82167 0.97901 1.87915 1.74193 1.22480 1.45192 1.22523 0.97676 0.95697 0.85134 1.22832 1.04199 0.96361 0.98770 1.22340 0.97247 0.91924 0.85809 0.91774 1.86531 1.46492 1.69697 1.14007 1.19434 0.90032 0.93324 0.86845 1.21101 0.99150 1.05308 0.99454 1.20800 0.98704 0.99023 0.92621 1.20943 0.99286 1.01193 0.98058 1.21415 0.93000 0.95696 0.97606 1.21569 1.01405 1.00467 0.90405 1.17977 0.82266 0.81497 0.89821 1.90536 1.53606 1.62488 1.33734 1.20900 1.10611 1.25534 0.98318 0.91070 1.25942 0.95703 0.95756 0.96711 1.69964 1.12518 1.27610 1.26578 0.86434 0.79523 0.79106 0.82221 1.19486 1.20252 1.18605 0.92532 0.93311 0.89843 0.88259 0.93347 0.88643 0.93361 0.89352 0.90403 0.86419 0.87002 0.86811 0.84805 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.61 37.16 0.32 -2.06 16 2 C -0.12 -1.78 2.99 -90.47 -0.27 -2.05 16 3 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 4 C 0.07 0.83 6.25 37.21 0.23 1.06 16 5 O -0.38 -5.00 10.19 -35.23 -0.36 -5.36 16 6 C 0.07 0.77 6.84 37.20 0.25 1.03 16 7 C -0.18 -2.62 5.06 -26.59 -0.13 -2.75 16 8 C 0.08 1.37 1.87 -26.55 -0.05 1.32 16 9 H 0.06 0.96 6.32 -51.93 -0.33 0.63 16 10 O -0.26 -5.60 7.10 -40.43 -0.29 -5.89 16 11 C 0.15 3.26 6.62 -38.61 -0.26 3.01 16 12 C -0.23 -4.04 8.28 -39.48 -0.33 -4.37 16 13 C -0.09 -1.49 10.03 -39.47 -0.40 -1.89 16 14 C -0.18 -2.98 10.02 -39.61 -0.40 -3.38 16 15 C -0.06 -1.20 9.43 -39.17 -0.37 -1.57 16 16 C -0.14 -3.29 5.90 -104.69 -0.62 -3.91 16 17 C 0.39 11.21 6.91 -34.42 -0.24 10.97 16 18 O -0.52 -16.37 13.71 -16.74 -0.23 -16.60 16 19 C -0.52 -14.46 8.86 -37.42 -0.33 -14.79 16 20 H 0.07 1.79 6.02 -52.49 -0.32 1.47 16 21 C 0.08 2.21 5.50 -17.32 -0.10 2.11 16 22 N -0.74 -21.36 11.73 55.57 0.65 -20.71 16 23 Si 0.90 19.44 29.56 -169.99 -5.03 14.41 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 27 H 0.06 0.93 6.15 -51.93 -0.32 0.61 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.77 7.61 -51.93 -0.40 1.37 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 1.41 6.64 -51.93 -0.34 1.06 16 35 H 0.08 1.07 6.90 -51.93 -0.36 0.71 16 36 H 0.12 1.74 5.39 -52.49 -0.28 1.45 16 37 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.13 2.61 6.20 -52.49 -0.33 2.28 16 40 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -33.09 321.31 -8.27 -41.36 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.19 Total: 5.20 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.68 Total: -17.27 kcal Atomic # 7 Polarization: -21.36 SS G_CDS: 0.65 Total: -20.71 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.88 Total: -27.84 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.09 -8.27 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233531717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.459 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds