Wall clock time and date at job start Tue Mar 31 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.57560 * 2 1 4 4 C 1.53110 * 109.45421 * 120.20513 * 2 1 3 5 5 O 1.42905 * 109.48250 * 62.38504 * 4 2 1 6 6 C 1.42908 * 114.10016 * 61.11432 * 5 4 2 7 7 C 1.53092 * 109.40926 * 298.84086 * 6 5 4 8 8 C 1.53176 * 109.16537 * 57.61128 * 7 6 5 9 9 H 1.08996 * 109.54865 * 62.97466 * 8 7 6 10 10 O 1.42904 * 109.53886 * 183.14974 * 8 7 6 11 11 C 1.35632 * 117.00174 * 274.87898 * 10 8 7 12 12 C 1.38673 * 120.16028 * 5.47357 * 11 10 8 13 13 C 1.38084 * 120.09126 * 180.02562 * 12 11 10 14 14 C 1.38681 * 120.41890 * 359.97438 * 13 12 11 15 15 C 1.37703 * 120.32495 * 359.97438 * 14 13 12 16 16 C 1.39851 * 119.89526 * 0.02562 * 15 14 13 17 17 C 1.47525 * 120.20261 * 179.97438 * 16 15 14 18 18 O 1.21810 * 120.00095 * 180.02562 * 17 16 15 19 19 C 1.41838 * 120.00144 * 359.97438 * 17 16 15 20 20 H 1.08001 * 119.99693 * 359.97438 * 19 17 16 21 21 C 1.40322 * 119.99862 * 180.02562 * 19 17 16 22 22 N 1.30540 * 120.00421 * 0.02562 * 21 19 17 23 23 Si 1.86807 * 119.99790 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47017 * 89.99985 * 23 21 19 25 25 H 1.48506 * 109.47033 * 210.00247 * 23 21 19 26 26 H 1.48498 * 109.46819 * 329.99822 * 23 21 19 27 27 H 1.08997 * 109.46760 * 180.15910 * 1 2 3 28 28 H 1.08998 * 109.46878 * 300.15720 * 1 2 3 29 29 H 1.08993 * 109.46917 * 60.15494 * 1 2 3 30 30 H 1.08995 * 109.48331 * 302.35752 * 4 2 1 31 31 H 1.09000 * 109.41642 * 182.36796 * 4 2 1 32 32 H 1.09000 * 109.47859 * 178.85859 * 6 5 4 33 33 H 1.08997 * 109.47712 * 58.81815 * 6 5 4 34 34 H 1.08998 * 109.52263 * 297.69976 * 7 6 5 35 35 H 1.09003 * 109.56624 * 177.54834 * 7 6 5 36 36 H 1.07998 * 119.95085 * 0.02718 * 12 11 10 37 37 H 1.08003 * 119.78691 * 179.97438 * 13 12 11 38 38 H 1.08008 * 119.83965 * 179.71633 * 14 13 12 39 39 H 1.08000 * 120.05170 * 179.97438 * 15 14 13 40 40 H 0.96999 * 120.00377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0399 -0.7263 1.2477 5 8 1.6099 -2.0887 1.2152 6 6 2.0988 -2.8285 0.0946 7 6 1.5895 -2.1879 -1.1993 8 6 2.0420 -0.7253 -1.2482 9 1 3.1307 -0.6811 -1.2750 10 8 1.5093 -0.0991 -2.4171 11 6 2.2140 -0.2414 -3.5673 12 6 3.3325 -1.0604 -3.6023 13 6 4.0491 -1.2037 -4.7739 14 6 3.6580 -0.5328 -5.9229 15 6 2.5495 0.2840 -5.9077 16 6 1.8139 0.4389 -4.7284 17 6 0.6254 1.3127 -4.7044 18 8 -0.0123 1.4453 -3.6752 19 6 0.2261 1.9992 -5.8796 20 1 0.7923 1.8826 -6.7919 21 6 -0.9040 2.8307 -5.8565 22 7 -1.5875 2.9729 -4.7535 23 14 -1.4304 3.7343 -7.4045 24 1 -2.3765 2.8875 -8.1744 25 1 -2.0968 5.0081 -7.0317 26 1 -0.2363 4.0259 -8.2377 27 1 -0.3633 -1.0277 0.0029 28 1 -0.3633 0.5163 0.8886 29 1 -0.3633 0.5114 -0.8913 30 1 1.6425 -0.2408 2.1389 31 1 3.1291 -0.6894 1.2687 32 1 1.7437 -3.8572 0.1552 33 1 3.1887 -2.8189 0.1003 34 1 0.5008 -2.2335 -1.2242 35 1 1.9963 -2.7240 -2.0568 36 1 3.6435 -1.5867 -2.7121 37 1 4.9197 -1.8425 -4.7956 38 1 4.2281 -0.6481 -6.8330 39 1 2.2491 0.8048 -6.8049 40 1 -2.3685 3.5480 -4.7375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233531717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:09 Heat of formation + Delta-G solvation = -123.632399 kcal Electronic energy + Delta-G solvation = -23729.694833 eV Core-core repulsion = 20280.770585 eV Total energy + Delta-G solvation = -3448.924247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61145 -40.14726 -38.43690 -37.76860 -34.80371 -34.59173 -32.79738 -32.05918 -30.57624 -28.74241 -27.92748 -25.89858 -24.58452 -24.13122 -22.92669 -21.52181 -20.20709 -19.03434 -18.45404 -17.71326 -17.24711 -17.04588 -16.42689 -16.19839 -16.07620 -15.76252 -15.63564 -14.97191 -14.95361 -14.50823 -14.46963 -13.96910 -13.76367 -13.63995 -13.26006 -13.03192 -12.89947 -12.70567 -12.64291 -12.57700 -12.40273 -12.18363 -12.08219 -11.95321 -11.66899 -11.39141 -11.17910 -10.96595 -10.59575 -9.72438 -9.44453 -8.95397 -8.26378 -7.00038 0.27154 0.61482 1.36049 1.37751 1.53053 2.21424 2.30056 2.36636 2.91726 2.92168 3.56151 3.63514 3.81182 3.82469 3.86993 3.99736 4.05208 4.13857 4.24011 4.33761 4.44105 4.45745 4.56490 4.62734 4.65305 4.70078 4.71972 4.82495 4.89517 5.01763 5.07292 5.17829 5.21558 5.23986 5.39890 5.44502 5.55300 5.71959 5.97191 6.08281 6.19303 6.68514 6.75551 6.92498 8.35325 8.57329 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.005238 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.799234 B = 5344.116159 C = 6668.034170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.120 4.120 3 H 0.076 0.924 4 C 0.077 3.923 5 O -0.392 6.392 6 C 0.070 3.930 7 C -0.177 4.177 8 C 0.074 3.926 9 H 0.085 0.915 10 O -0.298 6.298 11 C 0.131 3.869 12 C -0.226 4.226 13 C -0.071 4.071 14 C -0.170 4.170 15 C -0.064 4.064 16 C -0.196 4.196 17 C 0.366 3.634 18 O -0.569 6.569 19 C -0.553 4.553 20 H 0.090 0.910 21 C 0.024 3.976 22 N -0.793 5.793 23 Si 0.993 3.007 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.245 1.245 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.024 0.976 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.935 -9.685 5.083 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.139 4.139 3 H 0.094 0.906 4 C 0.001 3.999 5 O -0.310 6.310 6 C -0.007 4.007 7 C -0.215 4.215 8 C 0.018 3.982 9 H 0.102 0.898 10 O -0.211 6.211 11 C 0.085 3.915 12 C -0.244 4.244 13 C -0.089 4.089 14 C -0.187 4.187 15 C -0.083 4.083 16 C -0.198 4.198 17 C 0.263 3.737 18 O -0.461 6.461 19 C -0.584 4.584 20 H 0.108 0.892 21 C -0.194 4.194 22 N -0.422 5.422 23 Si 0.811 3.189 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.168 1.168 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.216 -9.561 5.900 15.875 hybrid contribution -0.563 0.804 -0.951 1.367 sum 10.653 -8.757 4.949 14.652 Atomic orbital electron populations 1.21583 0.95025 1.01503 1.00810 1.21887 0.97331 1.00352 0.94347 0.90563 1.22696 0.99569 0.81419 0.96252 1.87910 1.74814 1.22769 1.45557 1.22671 0.99221 0.95955 0.82813 1.22780 1.02429 0.95271 1.01009 1.22709 0.98265 0.92960 0.84304 0.89751 1.86503 1.48147 1.70937 1.15494 1.19689 0.91415 0.94128 0.86286 1.21435 0.97374 1.04029 1.01562 1.21433 0.98904 0.97484 0.91076 1.21359 0.97766 0.99400 1.00221 1.21482 0.94028 0.96607 0.96149 1.21259 1.01852 1.03139 0.93537 1.18734 0.83541 0.81915 0.89465 1.90482 1.55843 1.64511 1.35215 1.21418 1.11692 1.26259 0.99016 0.89192 1.27218 0.95152 0.96226 1.00804 1.70135 1.13399 1.28855 1.29836 0.85099 0.79544 0.77468 0.76772 1.18382 1.19438 1.16842 0.92503 0.91567 0.95655 0.86636 0.90605 0.86693 0.90549 0.92327 0.89780 0.83272 0.81805 0.82685 0.85105 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.61 71.98 0.62 -4.19 16 2 C -0.12 -3.72 2.99 -10.70 -0.03 -3.76 16 3 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.08 1.70 6.25 72.02 0.45 2.14 16 5 O -0.39 -9.38 10.19 -148.98 -1.52 -10.90 16 6 C 0.07 1.41 6.84 72.01 0.49 1.90 16 7 C -0.18 -4.93 5.06 30.68 0.16 -4.78 16 8 C 0.07 2.42 1.87 30.71 0.06 2.48 16 9 H 0.08 2.36 6.32 -2.39 -0.02 2.34 16 10 O -0.30 -13.92 7.10 -68.58 -0.49 -14.41 16 11 C 0.13 5.86 6.62 22.90 0.15 6.02 16 12 C -0.23 -7.32 8.28 22.34 0.18 -7.13 16 13 C -0.07 -1.94 10.03 22.34 0.22 -1.71 16 14 C -0.17 -5.14 10.02 22.25 0.22 -4.92 16 15 C -0.06 -2.62 9.43 22.53 0.21 -2.41 16 16 C -0.20 -9.92 5.90 -19.91 -0.12 -10.03 16 17 C 0.37 22.67 6.91 25.61 0.18 22.85 16 18 O -0.57 -39.61 13.71 16.18 0.22 -39.39 16 19 C -0.55 -32.35 8.86 23.67 0.21 -32.15 16 20 H 0.09 4.69 6.02 -2.91 -0.02 4.67 16 21 C 0.02 1.35 5.50 85.39 0.47 1.82 16 22 N -0.79 -49.05 11.73 21.88 0.26 -48.79 16 23 Si 0.99 40.99 29.56 68.60 2.03 43.02 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 26 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 27 H 0.06 2.01 6.15 -2.39 -0.01 1.99 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.02 1.18 7.61 -2.39 -0.02 1.17 16 30 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.96 6.64 -2.39 -0.02 1.95 16 35 H 0.08 2.19 6.90 -2.39 -0.02 2.17 16 36 H 0.15 3.79 5.39 -2.91 -0.02 3.78 16 37 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.13 5.18 6.20 -2.91 -0.02 5.16 16 40 H 0.28 15.46 8.29 -92.71 -0.77 14.69 16 Total: -1.00 -82.36 321.31 5.04 -77.32 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 1.06 Total: 26.99 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 3.48 Total: -33.85 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.26 Total: -48.79 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -1.78 Total: -64.70 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -82.36 5.04 -77.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233531717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.308 kcal (2) G-P(sol) polarization free energy of solvation -82.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds