Wall clock time and date at job start Tue Mar 31 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35964 * 116.99691 * 2 1 4 4 C 1.38695 * 119.93220 * 0.02562 * 3 2 1 5 5 C 1.37945 * 120.14354 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.99497 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47294 * 264.99916 * 6 5 4 8 8 H 1.07999 * 119.99515 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00043 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47216 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 119.99848 * 11 9 7 14 14 H 1.48501 * 109.47057 * 239.99829 * 11 9 7 15 15 C 1.39558 * 120.00500 * 0.25912 * 5 4 3 16 16 C 1.47769 * 120.07102 * 179.72386 * 15 5 4 17 17 C 1.32927 * 125.94231 * 285.02046 * 16 15 5 18 18 C 1.51192 * 108.10599 * 179.97438 * 17 16 15 19 19 O 1.44001 * 105.78910 * 17.46980 * 18 17 16 20 20 C 1.44186 * 103.87467 * 332.16381 * 19 18 17 21 21 C 1.39566 * 119.86244 * 359.46477 * 15 5 4 22 22 C 1.38282 * 119.85408 * 0.53130 * 21 15 5 23 23 O 1.36004 * 120.00357 * 179.76658 * 22 21 15 24 24 C 1.42898 * 116.99839 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47234 * 299.99833 * 1 2 3 26 26 H 1.09005 * 109.46953 * 59.99988 * 1 2 3 27 27 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 28 28 H 1.08008 * 119.92750 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.46665 * 145.00297 * 6 5 4 30 30 H 1.09000 * 109.47722 * 25.00629 * 6 5 4 31 31 H 0.97004 * 119.99507 * 180.02562 * 10 9 7 32 32 H 1.08000 * 125.95080 * 359.97438 * 17 16 15 33 33 H 1.08998 * 110.18459 * 136.54561 * 18 17 16 34 34 H 1.08991 * 110.18694 * 258.31105 * 18 17 16 35 35 H 1.09007 * 110.35330 * 268.85747 * 20 19 18 36 36 H 1.09001 * 110.11116 * 146.95828 * 20 19 18 37 37 H 1.07999 * 120.07535 * 180.27736 * 21 15 5 38 38 H 1.09003 * 109.47182 * 59.99465 * 24 23 22 39 39 H 1.08999 * 109.47632 * 179.97438 * 24 23 22 40 40 H 1.09004 * 109.46782 * 299.99795 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2894 2.3737 0.0005 5 6 1.9111 3.6052 0.0011 6 6 1.0855 4.8659 0.0011 7 6 0.9144 5.3544 -1.4143 8 1 1.3587 4.8064 -2.2320 9 6 0.1907 6.5007 -1.6652 10 7 -0.3499 7.1683 -0.6693 11 14 -0.0219 7.1058 -3.4197 12 1 0.6788 6.1841 -4.3495 13 1 -1.4674 7.1461 -3.7577 14 1 0.5542 8.4686 -3.5466 15 6 3.3044 3.6836 -0.0044 16 6 3.9719 5.0019 -0.0100 17 6 4.0715 5.8216 -1.0517 18 6 4.8298 7.0528 -0.6100 19 8 5.4969 6.6847 0.6119 20 6 4.6541 5.6564 1.1698 21 6 4.0663 2.5142 0.0009 22 6 3.4372 1.2828 0.0004 23 8 4.1766 0.1413 0.0008 24 6 5.5979 0.2891 0.0011 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2110 2.3145 0.0014 29 1 1.5905 5.6308 0.5909 30 1 0.1071 4.6596 0.4350 31 1 -0.8594 7.9746 -0.8460 32 1 3.6791 5.6398 -2.0413 33 1 5.5610 7.3359 -1.3671 34 1 4.1383 7.8756 -0.4292 35 1 3.9123 6.0951 1.8374 36 1 5.2593 4.9262 1.7069 37 1 5.1448 2.5709 0.0012 38 1 5.9059 0.8380 0.8910 39 1 6.0656 -0.6955 0.0018 40 1 5.9063 0.8376 -0.8890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239481265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:21 Heat of formation + Delta-G solvation = -90.464639 kcal Electronic energy + Delta-G solvation = -23453.293553 eV Core-core repulsion = 20005.807568 eV Total energy + Delta-G solvation = -3447.485985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61910 -40.63997 -39.34446 -38.25379 -35.16272 -33.81890 -32.53969 -30.95475 -29.39470 -29.32433 -28.03065 -27.50987 -25.19127 -24.11868 -22.96759 -22.21238 -20.37314 -19.10657 -18.48147 -17.97368 -17.78186 -17.01219 -16.96154 -16.80719 -16.47980 -16.09676 -15.68438 -15.36664 -15.18164 -14.58536 -14.45491 -14.35481 -13.81246 -13.43270 -13.36336 -13.29804 -13.12239 -13.04654 -12.73755 -12.55246 -12.51167 -12.27278 -12.03112 -11.91013 -11.82018 -11.56158 -11.25408 -11.13007 -10.57025 -9.69774 -9.45042 -8.62083 -8.13950 -6.26066 0.26226 0.48208 1.13724 1.37954 1.41115 1.51565 2.36930 2.39934 2.41684 2.72517 3.01980 3.16351 3.53883 3.89190 4.07020 4.08907 4.17313 4.35373 4.39127 4.40321 4.43399 4.45724 4.46691 4.50741 4.57186 4.61746 4.73044 4.73952 4.77132 4.79707 5.14030 5.21427 5.31627 5.37949 5.43855 5.52546 5.73313 5.77462 5.89433 5.97037 6.14290 6.21613 6.65258 6.83767 7.40655 8.93489 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.006694 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.552461 B = 4181.753973 C = 5851.163641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.323 6.323 3 C 0.094 3.906 4 C -0.180 4.180 5 C -0.043 4.043 6 C 0.068 3.932 7 C -0.502 4.502 8 H 0.051 0.949 9 C 0.014 3.986 10 N -0.928 5.928 11 Si 0.949 3.051 12 H -0.265 1.265 13 H -0.282 1.282 14 H -0.277 1.277 15 C -0.047 4.047 16 C -0.126 4.126 17 C -0.159 4.159 18 C 0.073 3.927 19 O -0.377 6.377 20 C 0.087 3.913 21 C -0.147 4.147 22 C 0.073 3.927 23 O -0.327 6.327 24 C 0.018 3.982 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.008 0.992 30 H -0.001 1.001 31 H 0.263 0.737 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.157 0.843 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -10.155 1.146 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.238 6.238 3 C 0.048 3.952 4 C -0.198 4.198 5 C -0.043 4.043 6 C 0.032 3.968 7 C -0.540 4.540 8 H 0.069 0.931 9 C -0.184 4.184 10 N -0.568 5.568 11 Si 0.774 3.226 12 H -0.189 1.189 13 H -0.208 1.208 14 H -0.202 1.202 15 C -0.047 4.047 16 C -0.127 4.127 17 C -0.177 4.177 18 C -0.003 4.003 19 O -0.296 6.296 20 C 0.011 3.989 21 C -0.165 4.165 22 C 0.028 3.972 23 O -0.241 6.241 24 C -0.077 4.077 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.154 0.846 29 H 0.027 0.973 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.175 0.825 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.552 -10.305 1.282 14.109 hybrid contribution -1.058 0.937 -0.862 1.655 sum 8.494 -9.368 0.420 12.652 Atomic orbital electron populations 1.23303 0.76990 1.05435 1.01763 1.86070 1.22819 1.25719 1.89149 1.18421 0.89602 0.85045 1.02121 1.20930 1.00232 0.90648 1.08034 1.20286 0.93408 0.95468 0.95168 1.17984 0.92695 0.89453 0.96711 1.21143 1.32071 1.08621 0.92199 0.93064 1.25697 0.95371 0.96836 1.00525 1.70077 1.35845 1.18159 1.32713 0.85634 0.77917 0.78447 0.80574 1.18923 1.20787 1.20247 1.17912 0.91465 0.91317 1.04039 1.21091 1.00907 0.94768 0.95909 1.24466 0.98880 0.94403 0.99902 1.22239 0.95995 0.95215 0.86837 1.89080 1.47029 1.56151 1.37386 1.22084 0.93156 0.89553 0.94085 1.21161 1.00701 0.89290 1.05377 1.18041 0.88131 0.86286 1.04745 1.86106 1.20519 1.27881 1.89640 1.23331 0.76919 1.05365 1.02047 0.92333 0.92770 0.85503 0.84649 0.97341 0.98232 0.92835 0.84506 0.86631 0.91666 0.91925 0.87340 0.82517 0.91790 0.86032 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.32 -10.69 10.27 -79.11 -0.81 -11.51 16 3 C 0.09 3.40 6.70 22.63 0.15 3.56 16 4 C -0.18 -7.06 8.65 22.31 0.19 -6.87 16 5 C -0.04 -1.86 5.10 -19.62 -0.10 -1.96 16 6 C 0.07 3.49 4.58 29.10 0.13 3.63 16 7 C -0.50 -26.86 7.99 25.60 0.20 -26.65 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.01 0.76 5.46 84.65 0.46 1.22 16 10 N -0.93 -53.72 13.29 21.45 0.28 -53.43 16 11 Si 0.95 42.58 29.54 68.60 2.03 44.61 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 C -0.05 -1.80 5.73 -20.12 -0.12 -1.91 16 16 C -0.13 -4.68 4.25 -18.36 -0.08 -4.76 16 17 C -0.16 -5.86 9.99 24.67 0.25 -5.61 16 18 C 0.07 2.36 7.64 71.39 0.55 2.90 16 19 O -0.38 -12.62 11.81 -148.98 -1.76 -14.38 16 20 C 0.09 2.88 7.62 71.39 0.54 3.42 16 21 C -0.15 -4.79 8.77 22.60 0.20 -4.59 16 22 C 0.07 2.49 6.69 22.53 0.15 2.64 16 23 O -0.33 -9.87 10.27 -79.55 -0.82 -10.69 16 24 C 0.02 0.34 9.81 113.37 1.11 1.46 16 25 H 0.06 1.38 7.65 -2.39 -0.02 1.36 16 26 H 0.05 1.35 7.66 -2.38 -0.02 1.33 16 27 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.14 5.09 6.27 -2.91 -0.02 5.07 16 29 H 0.01 0.46 7.28 -2.39 -0.02 0.44 16 30 H 0.00 -0.03 8.05 -2.39 -0.02 -0.05 16 31 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.14 5.29 7.91 -2.91 -0.02 5.27 16 33 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.16 4.10 6.29 -2.91 -0.02 4.09 16 38 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.07 7.66 -2.38 -0.02 1.06 16 Total: -1.00 -65.91 336.62 4.72 -61.18 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.04 Total: 16.16 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 4.76 Total: -31.94 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.28 Total: -53.43 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -3.39 Total: -36.57 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -65.91 4.72 -61.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239481265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.281 kcal (2) G-P(sol) polarization free energy of solvation -65.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds