Wall clock time and date at job start Tue Mar 31 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.72968 * 34.30463 * 13 12 11 15 15 C 1.54344 * 110.82469 * 270.89185 * 13 12 11 16 16 C 1.51365 * 105.17065 * 215.43110 * 15 13 12 17 17 C 1.38504 * 130.39112 * 197.16475 * 16 15 13 18 18 C 1.38112 * 120.21377 * 179.97438 * 17 16 15 19 19 C 1.38250 * 119.93330 * 0.05501 * 18 17 16 20 20 N 1.48022 * 120.02878 * 180.02562 * 19 18 17 21 21 O 1.21799 * 119.99991 * 179.97438 * 20 19 18 22 22 O 1.21796 * 119.99967 * 359.97055 * 20 19 18 23 23 C 1.38103 * 119.93653 * 359.97438 * 19 18 17 24 24 C 1.38211 * 109.76192 * 17.18834 * 16 15 13 25 25 C 1.51680 * 109.83896 * 359.84263 * 24 16 15 26 26 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 28 28 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 30 30 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 1.00895 * 111.00438 * 303.95603 * 12 11 10 34 34 H 1.09004 * 110.30466 * 334.35707 * 15 13 12 35 35 H 1.08999 * 110.30036 * 96.40952 * 15 13 12 36 36 H 1.07994 * 119.89560 * 0.02562 * 17 16 15 37 37 H 1.07997 * 120.02488 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.89104 * 179.97438 * 23 19 18 39 39 H 1.08997 * 110.49232 * 224.14889 * 25 24 16 40 40 H 1.08998 * 110.25571 * 101.89076 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7342 -7.3950 -0.0018 14 1 0.8098 -7.3325 -0.5760 15 6 1.4534 -7.8670 1.4406 16 6 1.6009 -9.3729 1.4005 17 6 1.1692 -10.3410 2.2919 18 6 1.4213 -11.6761 2.0438 19 6 2.1077 -12.0482 0.9029 20 7 2.3785 -13.4785 0.6347 21 8 2.9829 -13.8057 -0.3709 22 8 1.9971 -14.3281 1.4195 23 6 2.5395 -11.0842 0.0132 24 6 2.2870 -9.7450 0.2598 25 6 2.6459 -8.5135 -0.5497 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6045 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 0.8531 -5.0451 0.8886 32 1 0.8537 -5.0446 -0.8913 33 1 3.0695 -6.0363 -0.7831 34 1 2.1798 -7.4340 2.1284 35 1 0.4414 -7.5923 1.7381 36 1 0.6330 -10.0512 3.1834 37 1 1.0829 -12.4285 2.7408 38 1 3.0759 -11.3756 -0.8777 39 1 2.4451 -8.6807 -1.6079 40 1 3.6940 -8.2550 -0.3990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254575634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:56 Heat of formation + Delta-G solvation = 4.580741 kcal Electronic energy + Delta-G solvation = -21430.087248 eV Core-core repulsion = 18019.015490 eV Total energy + Delta-G solvation = -3411.071757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46269 -40.74932 -37.48516 -36.83068 -35.01917 -33.17750 -32.38664 -31.20150 -29.18434 -28.21020 -26.20906 -25.48849 -23.11714 -22.40874 -21.77009 -20.90165 -20.15188 -19.08776 -18.90131 -17.79779 -16.58466 -16.48555 -16.26828 -15.69044 -15.09586 -14.74211 -14.50460 -14.09897 -14.01708 -13.60699 -13.23831 -13.07442 -12.48461 -12.30235 -12.06627 -11.88929 -11.69078 -11.59724 -11.47891 -11.42617 -11.41222 -11.29600 -10.87368 -10.65447 -10.58129 -9.79658 -9.74708 -9.41696 -9.39401 -9.13484 -8.46003 -8.38976 -6.04527 -4.06960 -0.47579 0.52753 1.03239 1.10141 2.84687 3.30098 3.34638 3.37005 3.66834 3.77720 4.10371 4.20525 4.40130 4.42237 4.47148 4.53247 4.79849 4.88884 5.01909 5.27272 5.31195 5.31348 5.35601 5.40298 5.44302 5.56287 5.64052 5.65849 5.80740 5.86935 5.92267 6.16155 6.19082 6.59560 6.63639 7.03757 7.13710 7.36118 7.39624 7.61664 7.75660 7.95087 8.37946 8.99945 9.57301 11.06799 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.056728 B = 0.002089 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.461185 B =13399.951993 C =13669.732263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.058 3.942 12 N -0.682 5.682 13 C 0.086 3.914 14 H 0.062 0.938 15 C -0.084 4.084 16 C -0.031 4.031 17 C -0.108 4.108 18 C -0.054 4.054 19 C -0.051 4.051 20 N 0.032 4.968 21 O -0.164 6.164 22 O -0.164 6.164 23 C -0.043 4.043 24 C -0.092 4.092 25 C -0.084 4.084 26 H 0.261 0.739 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.344 0.656 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.084 0.916 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 -22.677 2.103 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.070 4.070 12 N -0.313 5.313 13 C -0.025 4.025 14 H 0.080 0.920 15 C -0.122 4.122 16 C -0.032 4.032 17 C -0.127 4.127 18 C -0.073 4.073 19 C -0.134 4.134 20 N 0.551 4.449 21 O -0.379 6.379 22 O -0.379 6.379 23 C -0.062 4.062 24 C -0.094 4.094 25 C -0.121 4.121 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.165 0.835 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.102 0.898 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.437 -21.854 2.901 22.180 hybrid contribution 0.132 0.432 -0.952 1.054 sum 2.568 -21.421 1.949 21.663 Atomic orbital electron populations 1.69951 1.06066 1.26744 1.50800 1.25036 0.94869 0.99309 0.95320 0.86646 0.79574 0.83068 0.78643 1.20248 1.21297 1.20208 1.21205 0.93015 0.91037 1.50653 0.92711 1.19056 0.93984 0.91368 0.97115 1.21634 0.99227 0.92865 1.00827 1.22214 0.94064 0.90644 1.00127 1.60611 1.20189 1.00542 1.49979 1.22168 0.96031 0.89487 0.94804 0.92027 1.21347 1.03850 0.87984 0.98977 1.21226 0.92071 0.97126 0.92746 1.20697 1.01173 0.90332 1.00492 1.20941 0.94293 0.97562 0.94520 1.20873 1.11052 0.80328 1.01161 1.43588 0.98191 1.03398 0.99743 1.94542 1.39555 1.86673 1.17172 1.94533 1.54286 1.45476 1.43632 1.20391 0.96572 0.90694 0.98582 1.20548 0.98650 0.93009 0.97146 1.21371 1.01696 0.89998 0.99035 0.92938 0.96816 0.96595 0.92477 0.93560 0.91307 0.95428 0.83764 0.87376 0.89627 0.83510 0.82840 0.83174 0.89783 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.06 5.41 -26.73 -0.14 -2.20 16 11 C 0.06 0.87 5.56 -3.82 -0.02 0.85 16 12 N -0.68 -7.98 6.30 -105.23 -0.66 -8.64 16 13 C 0.09 0.80 3.37 -66.30 -0.22 0.58 16 14 H 0.06 0.60 7.86 -51.93 -0.41 0.19 16 15 C -0.08 -0.73 6.48 -26.85 -0.17 -0.90 16 16 C -0.03 -0.25 6.14 -104.21 -0.64 -0.89 16 17 C -0.11 -0.76 10.04 -39.53 -0.40 -1.16 16 18 C -0.05 -0.43 9.55 -39.62 -0.38 -0.81 16 19 C -0.05 -0.50 6.85 -79.99 -0.55 -1.04 16 20 N 0.03 0.38 4.45 33.94 0.15 0.53 16 21 O -0.16 -2.06 18.45 -29.46 -0.54 -2.60 16 22 O -0.16 -2.01 18.45 -29.46 -0.54 -2.56 16 23 C -0.04 -0.38 9.55 -39.54 -0.38 -0.76 16 24 C -0.09 -0.77 6.14 -104.05 -0.64 -1.41 16 25 C -0.08 -0.64 6.26 -26.69 -0.17 -0.81 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.34 3.69 8.45 -39.29 -0.33 3.36 16 34 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.15 0.98 7.62 -52.49 -0.40 0.58 16 38 H 0.15 1.15 7.60 -52.49 -0.40 0.75 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -30.68 343.55 -10.69 -41.36 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.72 Total: -2.39 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -4.26 Total: -21.41 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.22 Total: -33.89 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -1.09 Total: -5.16 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.68 -10.69 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254575634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.946 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds