Wall clock time and date at job start Tue Mar 31 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.72968 * 34.30463 * 13 12 11 15 15 C 1.54344 * 110.82469 * 270.89185 * 13 12 11 16 16 C 1.51365 * 105.17065 * 215.43110 * 15 13 12 17 17 C 1.38504 * 130.39112 * 197.16475 * 16 15 13 18 18 C 1.38112 * 120.21377 * 179.97438 * 17 16 15 19 19 C 1.38250 * 119.93330 * 0.05501 * 18 17 16 20 20 N 1.48022 * 120.02878 * 180.02562 * 19 18 17 21 21 O 1.21799 * 119.99991 * 179.97438 * 20 19 18 22 22 O 1.21796 * 119.99967 * 359.97055 * 20 19 18 23 23 C 1.38103 * 119.93653 * 359.97438 * 19 18 17 24 24 C 1.38211 * 109.76192 * 17.18834 * 16 15 13 25 25 C 1.51680 * 109.83896 * 359.84263 * 24 16 15 26 26 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 28 28 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 30 30 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 1.00895 * 111.00438 * 303.95603 * 12 11 10 34 34 H 1.09004 * 110.30466 * 334.35707 * 15 13 12 35 35 H 1.08999 * 110.30036 * 96.40952 * 15 13 12 36 36 H 1.07994 * 119.89560 * 0.02562 * 17 16 15 37 37 H 1.07997 * 120.02488 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.89104 * 179.97438 * 23 19 18 39 39 H 1.08997 * 110.49232 * 224.14889 * 25 24 16 40 40 H 1.08998 * 110.25571 * 101.89076 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7342 -7.3950 -0.0018 14 1 0.8098 -7.3325 -0.5760 15 6 1.4534 -7.8670 1.4406 16 6 1.6009 -9.3729 1.4005 17 6 1.1692 -10.3410 2.2919 18 6 1.4213 -11.6761 2.0438 19 6 2.1077 -12.0482 0.9029 20 7 2.3785 -13.4785 0.6347 21 8 2.9829 -13.8057 -0.3709 22 8 1.9971 -14.3281 1.4195 23 6 2.5395 -11.0842 0.0132 24 6 2.2870 -9.7450 0.2598 25 6 2.6459 -8.5135 -0.5497 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6045 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 0.8531 -5.0451 0.8886 32 1 0.8537 -5.0446 -0.8913 33 1 3.0695 -6.0363 -0.7831 34 1 2.1798 -7.4340 2.1284 35 1 0.4414 -7.5923 1.7381 36 1 0.6330 -10.0512 3.1834 37 1 1.0829 -12.4285 2.7408 38 1 3.0759 -11.3756 -0.8777 39 1 2.4451 -8.6807 -1.6079 40 1 3.6940 -8.2550 -0.3990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254575634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:54 Heat of formation + Delta-G solvation = -11.776320 kcal Electronic energy + Delta-G solvation = -21430.796543 eV Core-core repulsion = 18019.015490 eV Total energy + Delta-G solvation = -3411.781053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.30054 -41.42934 -38.36669 -37.72145 -36.34173 -34.84512 -33.06390 -32.68587 -30.18485 -29.00911 -27.64277 -26.46898 -24.45002 -23.38071 -22.57324 -21.92805 -21.45113 -19.88303 -19.73421 -18.65044 -18.46870 -17.37314 -17.06492 -16.60654 -16.32726 -16.19383 -15.38998 -15.26736 -14.73789 -14.50117 -14.24763 -14.16833 -13.87003 -13.37637 -13.33757 -13.02047 -12.79654 -12.77401 -12.51769 -12.42191 -12.37419 -12.34824 -12.20952 -12.19926 -12.02198 -11.50466 -11.35798 -11.08652 -10.53869 -10.37023 -10.04591 -9.43248 -8.19589 -6.30129 -1.27734 -0.07256 0.25177 0.32792 1.40916 1.43397 1.51328 2.21082 2.41355 2.95383 3.06071 3.13733 3.42619 3.50657 3.74364 3.79867 3.92394 4.11964 4.19923 4.29345 4.40795 4.43472 4.62722 4.69102 4.72884 4.74968 4.76940 4.83840 4.89854 4.99269 5.06477 5.12162 5.19143 5.24809 5.27708 5.46429 5.54092 5.77765 5.88014 6.05583 6.28174 6.44134 6.47056 6.87346 7.39096 8.91844 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.056728 B = 0.002089 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.461185 B =13399.951993 C =13669.732263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.094 4.094 11 C 0.073 3.927 12 N -0.679 5.679 13 C 0.083 3.917 14 H 0.061 0.939 15 C -0.082 4.082 16 C -0.032 4.032 17 C -0.101 4.101 18 C -0.052 4.052 19 C -0.067 4.067 20 N 0.034 4.966 21 O -0.189 6.189 22 O -0.176 6.176 23 C -0.046 4.046 24 C -0.095 4.095 25 C -0.077 4.077 26 H 0.263 0.737 27 H -0.010 1.010 28 H -0.008 1.008 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.351 0.649 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.097 0.903 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 -22.601 2.485 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.057 4.057 12 N -0.311 5.311 13 C -0.027 4.027 14 H 0.079 0.921 15 C -0.119 4.119 16 C -0.033 4.033 17 C -0.119 4.119 18 C -0.071 4.071 19 C -0.150 4.150 20 N 0.548 4.452 21 O -0.400 6.400 22 O -0.390 6.390 23 C -0.065 4.065 24 C -0.096 4.096 25 C -0.114 4.114 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.171 0.829 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.192 0.808 37 H 0.186 0.814 38 H 0.174 0.826 39 H 0.116 0.884 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.223 -21.815 3.260 22.291 hybrid contribution -0.144 0.429 -1.036 1.131 sum 3.079 -21.385 2.224 21.720 Atomic orbital electron populations 1.70083 1.07735 1.27775 1.51766 1.25982 0.95788 1.03351 0.94862 0.85528 0.78286 0.78217 0.79185 1.19186 1.20968 1.19211 1.21693 0.93560 0.92482 1.50350 0.92227 1.18974 0.94487 0.93121 0.94767 1.21378 0.97990 0.92953 1.00842 1.21874 0.93911 0.89915 0.99951 1.60504 1.19569 1.00529 1.50522 1.22202 0.96210 0.88658 0.95613 0.92092 1.21294 1.04071 0.88259 0.98292 1.21303 0.92009 0.97000 0.92941 1.20970 1.00462 0.89529 1.00989 1.21194 0.93514 0.98345 0.94029 1.21067 1.12510 0.78997 1.02430 1.43883 0.97708 1.04253 0.99359 1.94529 1.40496 1.87238 1.17712 1.94510 1.54480 1.46400 1.43643 1.20473 0.96596 0.90701 0.98744 1.20589 0.98761 0.92878 0.97415 1.21314 1.01510 0.88889 0.99653 0.92824 0.99123 0.98968 0.92781 0.93058 0.91617 0.95635 0.82935 0.87856 0.89055 0.80834 0.81399 0.82565 0.88437 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.54 5.41 30.60 0.17 -3.37 16 11 C 0.07 2.11 5.56 86.31 0.48 2.59 16 12 N -0.68 -14.65 6.30 -486.85 -3.07 -17.72 16 13 C 0.08 1.39 3.37 45.83 0.15 1.54 16 14 H 0.06 1.07 7.86 -2.39 -0.02 1.05 16 15 C -0.08 -1.24 6.48 30.52 0.20 -1.04 16 16 C -0.03 -0.44 6.14 -19.60 -0.12 -0.56 16 17 C -0.10 -1.16 10.04 22.30 0.22 -0.93 16 18 C -0.05 -0.71 9.55 22.24 0.21 -0.50 16 19 C -0.07 -1.22 6.85 36.35 0.25 -0.97 16 20 N 0.03 0.78 4.45 -46.53 -0.21 0.58 16 21 O -0.19 -4.76 18.45 18.89 0.35 -4.41 16 22 O -0.18 -4.26 18.45 18.89 0.35 -3.91 16 23 C -0.05 -0.74 9.55 22.30 0.21 -0.53 16 24 C -0.10 -1.39 6.14 -19.50 -0.12 -1.51 16 25 C -0.08 -1.00 6.26 30.62 0.19 -0.80 16 26 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.03 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.35 6.79 8.45 -89.70 -0.76 6.03 16 34 H 0.10 1.72 8.08 -2.38 -0.02 1.70 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.17 1.78 7.62 -2.91 -0.02 1.76 16 38 H 0.16 2.24 7.60 -2.91 -0.02 2.21 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.30 8.06 -2.39 -0.02 1.28 16 Total: -1.00 -66.20 343.55 2.72 -63.48 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.29 Total: 6.52 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 2.69 Total: -34.38 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -2.99 Total: -72.81 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.70 Total: -8.32 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -66.20 2.72 -63.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254575634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.704 kcal (2) G-P(sol) polarization free energy of solvation -66.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds