Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48500 * 109.46892 * 239.99697 * 3 2 1 5 5 H 1.48502 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47554 * 119.99632 * 3 2 1 7 7 C 1.37875 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47421 * 180.02562 * 11 10 9 13 13 C 1.46895 * 110.99956 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.73276 * 323.04604 * 13 12 11 15 15 C 1.54343 * 110.82594 * 86.45370 * 13 12 11 16 16 C 1.51370 * 105.17433 * 144.76565 * 15 13 12 17 17 C 1.38498 * 130.39228 * 162.83680 * 16 15 13 18 18 C 1.38101 * 120.21560 * 180.23445 * 17 16 15 19 19 C 1.38259 * 119.93177 * 359.50440 * 18 17 16 20 20 N 1.48019 * 120.02897 * 180.25559 * 19 18 17 21 21 O 1.21803 * 119.99644 * 180.23654 * 20 19 18 22 22 O 1.21796 * 120.00492 * 0.24094 * 20 19 18 23 23 C 1.38095 * 119.93530 * 0.49613 * 19 18 17 24 24 C 1.38216 * 109.75504 * 342.81657 * 16 15 13 25 25 C 1.51364 * 109.76228 * 359.97438 * 24 16 15 26 26 H 0.97002 * 120.00487 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47253 * 60.00033 * 9 7 2 28 28 H 1.08993 * 109.47054 * 299.99561 * 9 7 2 29 29 H 1.08998 * 109.46775 * 60.00013 * 10 9 7 30 30 H 1.09003 * 109.47094 * 300.00060 * 10 9 7 31 31 H 1.09005 * 109.46711 * 59.99522 * 11 10 9 32 32 H 1.09000 * 109.46777 * 300.00782 * 11 10 9 33 33 H 1.00903 * 110.99844 * 56.04391 * 12 11 10 34 34 H 1.09000 * 110.30019 * 25.83881 * 15 13 12 35 35 H 1.09000 * 110.30236 * 263.68896 * 15 13 12 36 36 H 1.08002 * 119.88925 * 359.94999 * 17 16 15 37 37 H 1.08000 * 120.03724 * 179.72355 * 18 17 16 38 38 H 1.08004 * 119.89441 * 179.76373 * 23 19 18 39 39 H 1.09003 * 110.30625 * 258.26565 * 25 24 16 40 40 H 1.09007 * 110.30455 * 136.11383 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4349 -6.1037 0.0018 13 6 1.7346 -7.3950 0.0018 14 1 0.8343 -7.3457 0.6143 15 6 1.3951 -7.8351 -1.4380 16 6 1.5386 -9.3420 -1.4360 17 6 1.0684 -10.2896 -2.3300 18 6 1.3216 -11.6306 -2.1185 19 6 2.0555 -12.0286 -1.0164 20 7 2.3330 -13.4649 -0.7906 21 8 2.9759 -13.8153 0.1828 22 8 1.9185 -14.2965 -1.5782 23 6 2.5251 -11.0853 -0.1238 24 6 2.2680 -9.7403 -0.3316 25 6 2.6651 -8.5284 0.4837 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6044 -0.8895 31 1 0.8533 -5.0451 -0.8886 32 1 0.8539 -5.0445 0.8913 33 1 3.0697 -6.0362 0.7832 34 1 2.0951 -7.3894 -2.1447 35 1 0.3725 -7.5530 -1.6886 36 1 0.4980 -9.9790 -3.1929 37 1 0.9498 -12.3674 -2.8151 38 1 3.0951 -11.3973 0.7389 39 1 3.7069 -8.2696 0.2939 40 1 2.5095 -8.7193 1.5456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254575637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = 4.539437 kcal Electronic energy + Delta-G solvation = -21435.932288 eV Core-core repulsion = 18024.858739 eV Total energy + Delta-G solvation = -3411.073548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.46214 -40.75972 -37.48568 -36.82952 -35.02279 -33.17912 -32.39093 -31.20234 -29.18148 -28.21475 -26.20987 -25.49205 -23.12044 -22.41322 -21.76444 -20.87819 -20.15886 -19.08365 -18.89997 -17.79707 -16.60228 -16.48523 -16.27746 -15.69323 -15.08398 -14.73987 -14.50489 -14.10838 -14.00324 -13.60855 -13.23562 -13.09907 -12.47500 -12.30386 -12.06934 -11.88855 -11.68846 -11.60064 -11.47728 -11.42336 -11.41150 -11.28517 -10.87386 -10.65404 -10.58214 -9.79669 -9.74699 -9.41760 -9.39016 -9.13535 -8.46138 -8.39040 -6.04534 -4.06999 -0.47533 0.52811 1.03295 1.10200 2.84718 3.30090 3.34630 3.37005 3.66729 3.78219 4.10507 4.20433 4.39973 4.42279 4.47409 4.53485 4.79988 4.89037 5.02257 5.27609 5.31270 5.31414 5.36027 5.40233 5.44424 5.56292 5.64028 5.65914 5.80963 5.86912 5.92175 6.16218 6.19067 6.59483 6.63581 7.03694 7.13671 7.36159 7.39543 7.61615 7.75615 7.95026 8.37887 8.99889 9.57286 11.06782 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.056615 B = 0.002093 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.454114 B =13372.340065 C =13650.357026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.058 3.942 12 N -0.682 5.682 13 C 0.086 3.914 14 H 0.061 0.939 15 C -0.085 4.085 16 C -0.031 4.031 17 C -0.108 4.108 18 C -0.054 4.054 19 C -0.051 4.051 20 N 0.032 4.968 21 O -0.164 6.164 22 O -0.164 6.164 23 C -0.043 4.043 24 C -0.092 4.092 25 C -0.083 4.083 26 H 0.261 0.739 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.344 0.656 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.100 0.900 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -22.616 -2.155 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.070 4.070 12 N -0.313 5.313 13 C -0.025 4.025 14 H 0.079 0.921 15 C -0.122 4.122 16 C -0.032 4.032 17 C -0.127 4.127 18 C -0.073 4.073 19 C -0.134 4.134 20 N 0.551 4.449 21 O -0.379 6.379 22 O -0.379 6.379 23 C -0.062 4.062 24 C -0.093 4.093 25 C -0.120 4.120 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.165 0.835 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.118 0.882 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.307 -21.791 -2.932 22.108 hybrid contribution 0.128 0.432 0.940 1.043 sum 2.436 -21.358 -1.992 21.589 Atomic orbital electron populations 1.69948 1.06066 1.26748 1.50801 1.25033 0.94868 0.99309 0.95321 0.86646 0.79573 0.83069 0.78643 1.20208 1.21298 1.20249 1.21205 0.93016 0.91036 1.50652 0.92710 1.19058 0.93983 0.91368 0.97114 1.21634 0.99230 0.92860 1.00830 1.22207 0.94069 0.90635 1.00133 1.60608 1.20194 1.00530 1.49976 1.22155 0.95803 0.89495 0.95008 0.92149 1.21348 1.03690 0.88140 0.99008 1.21233 0.92160 0.97157 0.92647 1.20694 1.01165 0.90449 1.00376 1.20941 0.94255 0.97310 0.94812 1.20871 1.10301 0.80216 1.02018 1.43588 0.98309 1.03417 0.99607 1.94543 1.37782 1.85557 1.20065 1.94533 1.53957 1.47443 1.41987 1.20386 0.96771 0.90883 0.98195 1.20485 0.98500 0.92920 0.97416 1.21288 1.01493 0.90141 0.99116 0.92936 0.96596 0.96815 0.93558 0.92475 0.91304 0.95436 0.83760 0.87364 0.89632 0.83510 0.82839 0.83172 0.88160 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.06 5.41 -26.73 -0.14 -2.20 16 11 C 0.06 0.87 5.54 -3.83 -0.02 0.85 16 12 N -0.68 -7.98 6.29 -105.23 -0.66 -8.64 16 13 C 0.09 0.80 3.36 -66.30 -0.22 0.58 16 14 H 0.06 0.59 7.90 -51.93 -0.41 0.18 16 15 C -0.08 -0.73 6.43 -26.85 -0.17 -0.91 16 16 C -0.03 -0.26 6.14 -104.21 -0.64 -0.90 16 17 C -0.11 -0.77 10.04 -39.54 -0.40 -1.16 16 18 C -0.05 -0.43 9.55 -39.62 -0.38 -0.81 16 19 C -0.05 -0.50 6.85 -79.99 -0.55 -1.04 16 20 N 0.03 0.38 4.45 33.94 0.15 0.53 16 21 O -0.16 -2.06 18.45 -29.46 -0.54 -2.60 16 22 O -0.16 -2.01 18.45 -29.46 -0.54 -2.56 16 23 C -0.04 -0.38 9.55 -39.54 -0.38 -0.76 16 24 C -0.09 -0.77 6.14 -104.21 -0.64 -1.41 16 25 C -0.08 -0.64 6.26 -26.84 -0.17 -0.80 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 32 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.34 3.69 8.51 -39.29 -0.33 3.36 16 34 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.15 0.98 7.62 -52.49 -0.40 0.58 16 38 H 0.15 1.15 7.60 -52.48 -0.40 0.75 16 39 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -30.66 343.58 -10.69 -41.35 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.73 Total: -2.38 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -4.26 Total: -21.41 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.23 Total: -33.88 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -1.09 Total: -5.16 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.66 -10.69 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254575637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.892 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds