Wall clock time and date at job start Tue Mar 31 2020 06:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48500 * 109.46892 * 239.99697 * 3 2 1 5 5 H 1.48502 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47554 * 119.99632 * 3 2 1 7 7 C 1.37875 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47421 * 180.02562 * 11 10 9 13 13 C 1.46895 * 110.99956 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.73276 * 323.04604 * 13 12 11 15 15 C 1.54343 * 110.82594 * 86.45370 * 13 12 11 16 16 C 1.51370 * 105.17433 * 144.76565 * 15 13 12 17 17 C 1.38498 * 130.39228 * 162.83680 * 16 15 13 18 18 C 1.38101 * 120.21560 * 180.23445 * 17 16 15 19 19 C 1.38259 * 119.93177 * 359.50440 * 18 17 16 20 20 N 1.48019 * 120.02897 * 180.25559 * 19 18 17 21 21 O 1.21803 * 119.99644 * 180.23654 * 20 19 18 22 22 O 1.21796 * 120.00492 * 0.24094 * 20 19 18 23 23 C 1.38095 * 119.93530 * 0.49613 * 19 18 17 24 24 C 1.38216 * 109.75504 * 342.81657 * 16 15 13 25 25 C 1.51364 * 109.76228 * 359.97438 * 24 16 15 26 26 H 0.97002 * 120.00487 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47253 * 60.00033 * 9 7 2 28 28 H 1.08993 * 109.47054 * 299.99561 * 9 7 2 29 29 H 1.08998 * 109.46775 * 60.00013 * 10 9 7 30 30 H 1.09003 * 109.47094 * 300.00060 * 10 9 7 31 31 H 1.09005 * 109.46711 * 59.99522 * 11 10 9 32 32 H 1.09000 * 109.46777 * 300.00782 * 11 10 9 33 33 H 1.00903 * 110.99844 * 56.04391 * 12 11 10 34 34 H 1.09000 * 110.30019 * 25.83881 * 15 13 12 35 35 H 1.09000 * 110.30236 * 263.68896 * 15 13 12 36 36 H 1.08002 * 119.88925 * 359.94999 * 17 16 15 37 37 H 1.08000 * 120.03724 * 179.72355 * 18 17 16 38 38 H 1.08004 * 119.89441 * 179.76373 * 23 19 18 39 39 H 1.09003 * 110.30625 * 258.26565 * 25 24 16 40 40 H 1.09007 * 110.30455 * 136.11383 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4349 -6.1037 0.0018 13 6 1.7346 -7.3950 0.0018 14 1 0.8343 -7.3457 0.6143 15 6 1.3951 -7.8351 -1.4380 16 6 1.5386 -9.3420 -1.4360 17 6 1.0684 -10.2896 -2.3300 18 6 1.3216 -11.6306 -2.1185 19 6 2.0555 -12.0286 -1.0164 20 7 2.3330 -13.4649 -0.7906 21 8 2.9759 -13.8153 0.1828 22 8 1.9185 -14.2965 -1.5782 23 6 2.5251 -11.0853 -0.1238 24 6 2.2680 -9.7403 -0.3316 25 6 2.6651 -8.5284 0.4837 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6044 -0.8895 31 1 0.8533 -5.0451 -0.8886 32 1 0.8539 -5.0445 0.8913 33 1 3.0697 -6.0362 0.7832 34 1 2.0951 -7.3894 -2.1447 35 1 0.3725 -7.5530 -1.6886 36 1 0.4980 -9.9790 -3.1929 37 1 0.9498 -12.3674 -2.8151 38 1 3.0951 -11.3973 0.7389 39 1 3.7069 -8.2696 0.2939 40 1 2.5095 -8.7193 1.5456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254575637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:59 Heat of formation + Delta-G solvation = -11.802057 kcal Electronic energy + Delta-G solvation = -21436.640908 eV Core-core repulsion = 18024.858739 eV Total energy + Delta-G solvation = -3411.782169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.30055 -41.44143 -38.36749 -37.72082 -36.34390 -34.84827 -33.06610 -32.69151 -30.18212 -29.01395 -27.64721 -26.46957 -24.45753 -23.38068 -22.57172 -21.90750 -21.45686 -19.88057 -19.73225 -18.65028 -18.46708 -17.39955 -17.07130 -16.60614 -16.32991 -16.17987 -15.39595 -15.26553 -14.73301 -14.50251 -14.24963 -14.18006 -13.87043 -13.37746 -13.34635 -13.01830 -12.79642 -12.77410 -12.51861 -12.42171 -12.37507 -12.34786 -12.21544 -12.19613 -12.00726 -11.50350 -11.35734 -11.08735 -10.53881 -10.37231 -10.04369 -9.43412 -8.19555 -6.30115 -1.27785 -0.07372 0.25115 0.32745 1.40932 1.43398 1.51329 2.20932 2.41369 2.95167 3.06111 3.13767 3.42798 3.50560 3.74001 3.80075 3.92392 4.12019 4.20052 4.29367 4.40723 4.43717 4.62660 4.69076 4.72789 4.74995 4.76838 4.83858 4.90245 4.98997 5.06543 5.12080 5.19097 5.24629 5.27701 5.46340 5.54088 5.77787 5.88022 6.05472 6.28173 6.44127 6.47000 6.87341 7.39128 8.91867 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.056615 B = 0.002093 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.454114 B =13372.340065 C =13650.357026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.094 4.094 11 C 0.073 3.927 12 N -0.679 5.679 13 C 0.084 3.916 14 H 0.060 0.940 15 C -0.082 4.082 16 C -0.032 4.032 17 C -0.101 4.101 18 C -0.052 4.052 19 C -0.067 4.067 20 N 0.034 4.966 21 O -0.188 6.188 22 O -0.176 6.176 23 C -0.046 4.046 24 C -0.095 4.095 25 C -0.076 4.076 26 H 0.263 0.737 27 H -0.008 1.008 28 H -0.010 1.010 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.351 0.649 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.105 0.895 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -22.537 -2.498 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.056 4.056 12 N -0.311 5.311 13 C -0.026 4.026 14 H 0.078 0.922 15 C -0.120 4.120 16 C -0.033 4.033 17 C -0.120 4.120 18 C -0.071 4.071 19 C -0.150 4.150 20 N 0.548 4.452 21 O -0.400 6.400 22 O -0.390 6.390 23 C -0.065 4.065 24 C -0.096 4.096 25 C -0.113 4.113 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.171 0.829 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.191 0.809 37 H 0.186 0.814 38 H 0.175 0.825 39 H 0.123 0.877 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.078 -21.749 -3.254 22.206 hybrid contribution -0.143 0.429 1.015 1.111 sum 2.935 -21.320 -2.239 21.638 Atomic orbital electron populations 1.70080 1.07734 1.27778 1.51767 1.25978 0.95786 1.03349 0.94864 0.85528 0.78287 0.78222 0.79184 1.19214 1.20970 1.19187 1.21693 0.93559 0.92483 1.50348 0.92229 1.18976 0.94486 0.93117 0.94770 1.21377 0.97991 0.92951 1.00841 1.21867 0.93914 0.89902 0.99964 1.60499 1.19576 1.00518 1.50515 1.22188 0.96037 0.88678 0.95743 0.92174 1.21298 1.03901 0.88434 0.98333 1.21309 0.92126 0.97006 0.92855 1.20965 1.00551 0.89677 1.00762 1.21192 0.93495 0.98056 0.94339 1.21064 1.11736 0.78876 1.03313 1.43882 0.97837 1.04277 0.99206 1.94529 1.38688 1.86141 1.20599 1.94510 1.54146 1.48356 1.42026 1.20470 0.96799 0.90898 0.98330 1.20525 0.98613 0.92786 0.97675 1.21229 1.01230 0.89021 0.99815 0.92822 0.98961 0.99121 0.93062 0.92781 0.91593 0.95650 0.82932 0.87879 0.89077 0.80856 0.81400 0.82542 0.87668 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.54 5.41 30.60 0.17 -3.37 16 11 C 0.07 2.11 5.54 86.30 0.48 2.59 16 12 N -0.68 -14.65 6.29 -486.85 -3.06 -17.71 16 13 C 0.08 1.39 3.36 45.83 0.15 1.55 16 14 H 0.06 1.05 7.90 -2.39 -0.02 1.03 16 15 C -0.08 -1.25 6.43 30.52 0.20 -1.06 16 16 C -0.03 -0.45 6.14 -19.59 -0.12 -0.57 16 17 C -0.10 -1.17 10.04 22.30 0.22 -0.94 16 18 C -0.05 -0.72 9.55 22.24 0.21 -0.51 16 19 C -0.07 -1.22 6.85 36.35 0.25 -0.97 16 20 N 0.03 0.78 4.45 -46.53 -0.21 0.58 16 21 O -0.19 -4.75 18.45 18.88 0.35 -4.40 16 22 O -0.18 -4.26 18.45 18.89 0.35 -3.91 16 23 C -0.05 -0.74 9.55 22.30 0.21 -0.52 16 24 C -0.09 -1.38 6.14 -19.60 -0.12 -1.50 16 25 C -0.08 -0.99 6.26 30.52 0.19 -0.80 16 26 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 1.96 8.13 -2.38 -0.02 1.94 16 32 H 0.03 0.75 8.09 -2.39 -0.02 0.73 16 33 H 0.35 6.79 8.51 -89.69 -0.76 6.03 16 34 H 0.10 1.73 8.08 -2.39 -0.02 1.71 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 37 H 0.17 1.79 7.62 -2.91 -0.02 1.77 16 38 H 0.16 2.23 7.60 -2.91 -0.02 2.21 16 39 H 0.11 1.31 8.08 -2.39 -0.02 1.29 16 40 H 0.10 1.02 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -66.14 343.58 2.71 -63.43 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.28 Total: 6.55 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 2.69 Total: -34.39 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -2.98 Total: -72.79 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.70 Total: -8.31 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.14 2.71 -63.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254575637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.632 kcal (2) G-P(sol) polarization free energy of solvation -66.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds