Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 H 1.09003 * 109.47102 * 55.00102 * 3 2 1 5 5 C 1.50704 * 109.47277 * 175.00202 * 3 2 1 6 6 H 1.07992 * 120.00356 * 119.99786 * 5 3 2 7 7 C 1.37884 * 119.99833 * 300.00304 * 5 3 2 8 8 N 1.31514 * 119.99706 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46842 * 90.00613 * 9 7 5 11 11 H 1.48507 * 109.46910 * 209.99885 * 9 7 5 12 12 H 1.48499 * 109.47539 * 330.00304 * 9 7 5 13 13 N 1.46497 * 109.47082 * 295.00100 * 3 2 1 14 14 C 1.38112 * 119.99892 * 85.00352 * 13 3 2 15 15 N 1.30859 * 120.00260 * 5.89351 * 14 13 3 16 16 C 1.46749 * 119.99806 * 185.89747 * 14 13 3 17 17 C 1.38154 * 126.73614 * 187.53342 * 16 14 13 18 18 N 1.32576 * 108.24169 * 179.97438 * 17 16 14 19 19 C 1.33079 * 109.71451 * 0.02562 * 18 17 16 20 20 C 1.40730 * 131.84728 * 179.97438 * 19 18 17 21 21 C 1.36189 * 119.41957 * 179.97438 * 20 19 18 22 22 C 1.40406 * 119.63615 * 359.97438 * 21 20 19 23 23 F 1.35097 * 119.94381 * 179.97438 * 22 21 20 24 24 C 1.35363 * 120.11184 * 359.97438 * 22 21 20 25 25 N 1.36210 * 120.59081 * 359.76778 * 24 22 21 26 26 H 1.09001 * 109.47227 * 59.99957 * 1 2 3 27 27 H 1.08999 * 109.46998 * 299.99703 * 1 2 3 28 28 H 1.08998 * 109.46707 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47227 * 120.00042 * 2 1 3 30 30 H 1.08999 * 109.46998 * 240.00297 * 2 1 3 31 31 H 0.96998 * 119.99460 * 179.97438 * 8 7 5 32 32 H 0.97006 * 120.00056 * 264.99431 * 13 3 2 33 33 H 0.96999 * 120.00113 * 180.02562 * 15 14 13 34 34 H 1.07997 * 125.87790 * 359.94453 * 17 16 14 35 35 H 1.07994 * 120.28648 * 359.97430 * 20 19 18 36 36 H 1.08006 * 120.18007 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.70586 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 5.4540 0.8804 1.3362 9 14 3.0964 0.1100 2.5706 10 1 2.8746 -1.3261 2.2644 11 1 3.7943 0.2358 3.8754 12 1 1.7881 0.8092 2.6394 13 7 1.6524 2.0974 -1.2518 14 6 0.4050 2.6784 -1.3697 15 7 -0.3863 2.7462 -0.3296 16 6 -0.0331 3.2197 -2.6614 17 6 -1.1786 3.9529 -2.9045 18 7 -1.2123 4.2544 -4.1951 19 6 -0.1408 3.7499 -4.8021 20 6 0.2841 3.7892 -6.1431 21 6 1.4477 3.1750 -6.4945 22 6 2.2061 2.5127 -5.5159 23 9 3.3611 1.9009 -5.8577 24 6 1.7821 2.4862 -4.2307 25 7 0.6221 3.1028 -3.8707 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 5.8771 0.4826 2.1131 32 1 2.2720 2.1232 -1.9978 33 1 -1.2625 3.1539 -0.4126 34 1 -1.9192 4.2319 -2.1697 35 1 -0.3074 4.3021 -6.8870 36 1 1.7852 3.1972 -7.5202 37 1 2.3708 1.9753 -3.4833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = 65.017827 kcal Electronic energy + Delta-G solvation = -23024.171171 eV Core-core repulsion = 19524.552609 eV Total energy + Delta-G solvation = -3499.618562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.22440 -44.00902 -39.27868 -38.33832 -35.89225 -34.74425 -33.95865 -32.39773 -30.97691 -29.71173 -29.18880 -25.41346 -24.77714 -24.21074 -23.46684 -22.07234 -21.47825 -19.85884 -19.00213 -18.66801 -17.62449 -17.51441 -17.45290 -16.76374 -16.44572 -16.40840 -16.13062 -15.55131 -15.35328 -14.95364 -14.80295 -14.74623 -14.22622 -13.90714 -13.58788 -13.15304 -12.86506 -12.82432 -12.76936 -12.61930 -12.30291 -11.96965 -11.69562 -11.50996 -11.32336 -11.12659 -10.80576 -10.29683 -9.92758 -9.19431 -8.81989 -8.37262 -6.42629 -0.59239 -0.31336 1.09853 1.15557 1.29277 1.37183 1.48493 2.22038 2.22655 2.27960 2.34327 2.78268 2.98089 2.99882 3.19400 3.46262 3.63908 3.92400 4.09367 4.28263 4.34401 4.39381 4.48925 4.53413 4.71012 4.77162 4.82494 4.97409 5.10336 5.21776 5.24380 5.28916 5.31456 5.52050 5.60545 5.68525 6.01876 6.37231 6.49434 6.61009 6.75235 7.23045 7.66618 8.78348 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.018725 B = 0.005276 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.943492 B = 5305.421339 C = 6340.689336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.137 4.137 3 C 0.266 3.734 4 H 0.040 0.960 5 C -0.537 4.537 6 H 0.044 0.956 7 C 0.028 3.972 8 N -0.938 5.938 9 Si 0.942 3.058 10 H -0.263 1.263 11 H -0.296 1.296 12 H -0.250 1.250 13 N -0.705 5.705 14 C 0.489 3.511 15 N -0.771 5.771 16 C -0.110 4.110 17 C 0.091 3.909 18 N -0.498 5.498 19 C 0.207 3.793 20 C -0.040 4.040 21 C -0.109 4.109 22 C 0.104 3.896 23 F -0.118 7.118 24 C -0.012 4.012 25 N -0.333 5.333 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.269 0.731 32 H 0.391 0.609 33 H 0.347 0.653 34 H 0.213 0.787 35 H 0.202 0.798 36 H 0.202 0.798 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.992 3.886 -16.836 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.176 4.176 3 C 0.161 3.839 4 H 0.057 0.943 5 C -0.576 4.576 6 H 0.063 0.937 7 C -0.172 4.172 8 N -0.577 5.577 9 Si 0.769 3.231 10 H -0.189 1.189 11 H -0.224 1.224 12 H -0.174 1.174 13 N -0.345 5.345 14 C 0.208 3.792 15 N -0.407 5.407 16 C -0.227 4.227 17 C -0.068 4.068 18 N -0.217 5.217 19 C -0.034 4.034 20 C -0.059 4.059 21 C -0.133 4.133 22 C 0.081 3.919 23 F -0.097 7.097 24 C -0.138 4.138 25 N -0.003 5.003 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.165 0.835 34 H 0.229 0.771 35 H 0.219 0.781 36 H 0.219 0.781 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.283 3.881 -15.924 20.482 hybrid contribution 0.983 -0.642 0.449 1.257 sum -11.300 3.239 -15.475 19.433 Atomic orbital electron populations 1.21705 0.94699 0.99941 1.02070 1.22212 0.96440 0.98737 1.00164 1.18695 0.92193 0.89247 0.83737 0.94256 1.21368 0.91022 1.38440 1.06726 0.93740 1.25587 0.95778 0.95817 0.99975 1.69998 1.10490 1.46329 1.30879 0.85952 0.79655 0.79696 0.77835 1.18946 1.22352 1.17411 1.44887 1.12651 1.59912 1.17097 1.18908 0.87303 0.87817 0.85164 1.69839 1.11648 1.32004 1.27191 1.21570 0.99875 1.16122 0.85155 1.23257 0.95051 0.94883 0.93652 1.70569 1.19651 1.24953 1.06506 1.21741 0.90318 0.98393 0.92995 1.20717 0.96181 0.98512 0.90508 1.21581 0.93564 0.96452 1.01681 1.16905 0.85154 0.98098 0.91709 1.91602 1.45357 1.80579 1.92117 1.21472 0.90200 1.03678 0.98429 1.42414 1.15065 1.33380 1.09483 0.92954 0.92992 0.93315 0.93987 0.92765 0.92188 0.77036 0.83550 0.77055 0.78055 0.78077 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.53 71.98 0.61 -4.09 16 2 C -0.14 -5.89 5.11 30.59 0.16 -5.73 16 3 C 0.27 12.51 1.84 44.25 0.08 12.59 16 4 H 0.04 2.02 6.51 -2.39 -0.02 2.01 16 5 C -0.54 -29.85 9.31 25.60 0.24 -29.61 16 6 H 0.04 2.67 7.98 -2.91 -0.02 2.65 16 7 C 0.03 1.58 5.45 84.66 0.46 2.04 16 8 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 9 Si 0.94 45.04 24.41 68.60 1.67 46.72 16 10 H -0.26 -11.94 6.83 99.48 0.68 -11.26 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.25 -11.61 6.53 99.48 0.65 -10.96 16 13 N -0.71 -28.31 5.08 -322.86 -1.64 -29.94 16 14 C 0.49 17.31 6.19 135.83 0.84 18.15 16 15 N -0.77 -27.20 10.70 -51.49 -0.55 -27.75 16 16 C -0.11 -3.30 7.00 40.37 0.28 -3.02 16 17 C 0.09 2.34 11.34 84.56 0.96 3.30 16 18 N -0.50 -12.87 11.26 -192.80 -2.17 -15.04 16 19 C 0.21 4.88 7.78 134.03 1.04 5.92 16 20 C -0.04 -0.56 10.10 22.40 0.23 -0.34 16 21 C -0.11 -1.35 10.05 22.32 0.22 -1.13 16 22 C 0.10 2.06 7.26 22.13 0.16 2.22 16 23 F -0.12 -2.53 17.26 44.97 0.78 -1.75 16 24 C -0.01 -0.31 10.32 83.35 0.86 0.55 16 25 N -0.33 -9.04 2.96 -339.65 -1.00 -10.04 16 26 H 0.05 1.89 5.73 -2.39 -0.01 1.88 16 27 H 0.05 1.99 7.80 -2.39 -0.02 1.97 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.90 3.22 -2.39 -0.01 1.89 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.39 14.92 4.91 -92.70 -0.46 14.47 16 33 H 0.35 10.02 7.71 -92.71 -0.71 9.31 16 34 H 0.21 4.09 7.48 -2.91 -0.02 4.07 16 35 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.16 4.61 5.21 -2.91 -0.02 4.59 16 Total: -1.00 -69.44 303.61 3.43 -66.02 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.11 Total: 27.83 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 6.15 Total: 0.85 kcal Atomic # 7 Polarization: -134.59 SS G_CDS: -5.07 Total: -139.66 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.67 Total: 46.72 kcal Total: -69.44 3.43 -66.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.038 kcal (2) G-P(sol) polarization free energy of solvation -69.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds