Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46762 * 2 1 4 4 H 1.09004 * 109.46809 * 302.47114 * 3 2 1 5 5 C 1.50701 * 109.46776 * 182.47629 * 3 2 1 6 6 H 1.08003 * 119.99363 * 245.23885 * 5 3 2 7 7 C 1.37879 * 120.00308 * 64.96814 * 5 3 2 8 8 N 1.31507 * 119.99675 * 355.64141 * 7 5 3 9 9 Si 1.86801 * 119.99858 * 175.64661 * 7 5 3 10 10 H 1.48502 * 109.47433 * 94.99644 * 9 7 5 11 11 H 1.48501 * 109.46562 * 214.99660 * 9 7 5 12 12 H 1.48501 * 109.47135 * 334.99396 * 9 7 5 13 13 N 1.46496 * 109.47056 * 62.47291 * 3 2 1 14 14 C 1.38106 * 120.00076 * 274.99584 * 13 3 2 15 15 N 1.30864 * 120.00169 * 5.14290 * 14 13 3 16 16 C 1.46746 * 120.00147 * 185.13679 * 14 13 3 17 17 C 1.38151 * 126.73805 * 187.87031 * 16 14 13 18 18 N 1.32574 * 108.24457 * 179.97438 * 17 16 14 19 19 C 1.33082 * 109.71142 * 359.97438 * 18 17 16 20 20 C 1.40733 * 131.84741 * 179.97438 * 19 18 17 21 21 C 1.36191 * 119.42345 * 180.02562 * 20 19 18 22 22 C 1.40406 * 119.62758 * 0.02562 * 21 20 19 23 23 F 1.35106 * 119.94267 * 179.97438 * 22 21 20 24 24 C 1.35366 * 120.11796 * 359.97357 * 22 21 20 25 25 N 1.36206 * 120.58958 * 359.78099 * 24 22 21 26 26 H 1.09005 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47475 * 299.99996 * 1 2 3 28 28 H 1.09004 * 109.47089 * 60.00788 * 1 2 3 29 29 H 1.09000 * 109.47475 * 240.00004 * 2 1 3 30 30 H 1.08997 * 109.46981 * 119.99600 * 2 1 3 31 31 H 0.97003 * 119.99968 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99970 * 95.00332 * 13 3 2 33 33 H 0.97000 * 120.00476 * 180.02562 * 15 14 13 34 34 H 1.07997 * 125.87637 * 359.94034 * 17 16 14 35 35 H 1.07997 * 120.28364 * 359.97438 * 20 19 18 36 36 H 1.07999 * 120.18729 * 179.97438 * 21 20 19 37 37 H 1.07992 * 119.70199 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6408 1.9690 -0.8670 5 6 3.5457 1.4430 -0.0614 6 1 4.1199 1.8227 0.7709 7 6 4.1903 0.9536 -1.1776 8 7 3.4956 0.4082 -2.1519 9 14 6.0506 1.0653 -1.3058 10 1 6.6565 -0.2060 -0.8347 11 1 6.4358 1.3030 -2.7202 12 1 6.5383 2.1877 -0.4647 13 7 1.6008 2.1157 1.2248 14 6 0.3498 2.6979 1.2823 15 7 -0.4817 2.5622 0.2809 16 6 -0.0472 3.4686 2.4663 17 6 -1.3023 3.9779 2.7382 18 7 -1.2507 4.6091 3.9029 19 6 -0.0189 4.5327 4.4007 20 6 0.5459 5.0309 5.5895 21 6 1.8622 4.8006 5.8527 22 6 2.6360 4.0712 4.9359 23 9 3.9425 3.8395 5.1904 24 6 2.0755 3.5998 3.7976 25 7 0.7586 3.8218 3.5299 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9491 0.0636 -2.9370 32 1 2.1888 2.1526 1.9954 33 1 -1.3603 2.9714 0.3211 34 1 -2.1751 3.8793 2.1098 35 1 -0.0590 5.5917 6.2866 36 1 2.3084 5.1777 6.7611 37 1 2.6768 3.0392 3.0973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = 80.432159 kcal Electronic energy + Delta-G solvation = -22936.586848 eV Core-core repulsion = 19437.636701 eV Total energy + Delta-G solvation = -3498.950147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.27131 -42.96368 -37.66240 -37.19178 -34.22926 -33.55947 -31.71499 -30.50969 -29.98924 -28.59157 -26.77364 -24.35495 -23.45854 -22.96081 -22.09798 -20.53184 -19.47949 -18.56448 -18.05345 -16.71410 -16.55663 -16.54112 -15.60291 -15.44012 -15.31033 -14.93743 -14.61652 -14.26308 -13.89188 -13.61530 -13.39393 -13.28633 -12.61186 -12.03186 -11.80498 -11.58766 -11.43821 -11.18865 -10.97012 -10.93731 -10.54239 -10.43676 -10.23895 -10.03167 -9.54854 -9.01043 -8.91676 -8.67287 -8.45602 -7.94365 -7.17891 -6.12622 -4.21026 0.31716 0.69046 2.15462 2.25592 3.16203 3.23172 3.30852 3.32681 3.64921 3.70035 3.81122 3.97299 4.20964 4.36867 4.45400 4.53102 5.07934 5.12658 5.19638 5.25517 5.44890 5.48296 5.57641 6.12026 6.26654 6.37623 6.52239 6.59027 6.69352 6.82847 7.14023 7.28765 7.49605 7.54495 7.63450 7.71550 7.84021 8.01865 8.26844 8.50746 8.80451 9.16776 9.45624 10.93221 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.005527 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.356308 B = 5064.396594 C = 6545.599073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.123 4.123 3 C 0.285 3.715 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.480 3.520 15 N -0.741 5.741 16 C -0.069 4.069 17 C 0.075 3.925 18 N -0.480 5.480 19 C 0.208 3.792 20 C -0.045 4.045 21 C -0.131 4.131 22 C 0.088 3.912 23 F -0.117 7.117 24 C 0.021 3.979 25 N -0.332 5.332 26 H 0.011 0.989 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.264 0.736 32 H 0.381 0.619 33 H 0.329 0.671 34 H 0.190 0.810 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 7.536 14.579 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.162 4.162 3 C 0.184 3.816 4 H 0.075 0.925 5 C -0.577 4.577 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.342 5.342 14 C 0.197 3.803 15 N -0.375 5.375 16 C -0.187 4.187 17 C -0.083 4.083 18 N -0.198 5.198 19 C -0.033 4.033 20 C -0.065 4.065 21 C -0.155 4.155 22 C 0.066 3.934 23 F -0.095 7.095 24 C -0.104 4.104 25 N -0.003 5.003 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.144 0.856 34 H 0.207 0.793 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.915 7.233 13.625 16.190 hybrid contribution 1.740 0.082 0.549 1.827 sum -3.175 7.315 14.174 16.263 Atomic orbital electron populations 1.21878 0.97951 0.97053 1.01853 1.21914 0.93050 0.99857 1.01391 1.18739 0.92745 0.88734 0.81426 0.92513 1.21233 0.90860 1.42799 1.02803 0.92640 1.24834 0.98459 0.94616 0.95475 1.69920 1.35418 1.38230 1.07979 0.86519 0.85194 0.78361 0.77545 1.20637 1.20976 1.19893 1.45482 1.11726 1.58736 1.18231 1.19005 0.88643 0.87675 0.84975 1.70128 1.08604 1.32928 1.25879 1.22087 0.92037 1.12202 0.92358 1.22858 0.95324 0.96173 0.93994 1.70518 1.15768 1.22920 1.10643 1.20996 0.87892 1.00108 0.94315 1.20169 0.94153 0.98767 0.93433 1.21121 0.93666 1.00141 1.00617 1.16610 0.79992 1.01921 0.94897 1.91593 1.31305 1.92874 1.93739 1.21529 0.84442 1.04799 0.99618 1.42432 1.07310 1.34211 1.16312 0.96971 0.94078 0.92314 0.89164 0.95646 0.92613 0.78307 0.85578 0.79313 0.81866 0.82495 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.35 37.16 0.31 -2.49 16 2 C -0.12 -2.95 5.48 -26.73 -0.15 -3.09 16 3 C 0.29 6.96 2.22 -69.08 -0.15 6.81 16 4 H 0.06 1.59 7.63 -51.93 -0.40 1.19 16 5 C -0.54 -14.01 8.67 -34.44 -0.30 -14.31 16 6 H 0.06 1.39 7.72 -52.48 -0.41 0.98 16 7 C 0.07 1.86 5.35 -17.82 -0.10 1.76 16 8 N -0.88 -24.35 11.51 55.43 0.64 -23.71 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.30 5.05 -53.40 -0.27 -14.57 16 14 C 0.48 8.90 6.49 -154.08 -1.00 7.90 16 15 N -0.74 -14.03 9.77 32.37 0.32 -13.72 16 16 C -0.07 -1.10 7.00 -81.67 -0.57 -1.67 16 17 C 0.07 1.06 11.34 -17.26 -0.20 0.87 16 18 N -0.48 -6.94 11.26 -12.29 -0.14 -7.08 16 19 C 0.21 2.79 7.78 -156.04 -1.21 1.58 16 20 C -0.05 -0.43 10.10 -39.38 -0.40 -0.83 16 21 C -0.13 -1.13 10.05 -39.50 -0.40 -1.53 16 22 C 0.09 0.98 7.26 -39.79 -0.29 0.70 16 23 F -0.12 -1.35 17.26 2.25 0.04 -1.31 16 24 C 0.02 0.28 10.31 -16.63 -0.17 0.11 16 25 N -0.33 -4.81 2.96 -58.71 -0.17 -4.98 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.85 5.55 -51.93 -0.29 0.56 16 28 H 0.06 1.32 7.45 -51.93 -0.39 0.93 16 29 H 0.09 2.40 6.26 -51.93 -0.32 2.08 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.38 7.05 4.89 -40.82 -0.20 6.85 16 33 H 0.33 5.25 7.71 -40.82 -0.31 4.94 16 34 H 0.19 2.12 7.49 -52.49 -0.39 1.73 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.18 2.48 5.21 -52.49 -0.27 2.21 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -29.77 309.66 -8.37 -38.14 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -3.81 Total: 11.27 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -4.62 Total: -4.19 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: 0.37 Total: -64.06 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.77 -8.37 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.571 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds