Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46762 * 2 1 4 4 H 1.09004 * 109.46809 * 302.47114 * 3 2 1 5 5 C 1.50701 * 109.46776 * 182.47629 * 3 2 1 6 6 H 1.08003 * 119.99363 * 245.23885 * 5 3 2 7 7 C 1.37879 * 120.00308 * 64.96814 * 5 3 2 8 8 N 1.31507 * 119.99675 * 355.64141 * 7 5 3 9 9 Si 1.86801 * 119.99858 * 175.64661 * 7 5 3 10 10 H 1.48502 * 109.47433 * 94.99644 * 9 7 5 11 11 H 1.48501 * 109.46562 * 214.99660 * 9 7 5 12 12 H 1.48501 * 109.47135 * 334.99396 * 9 7 5 13 13 N 1.46496 * 109.47056 * 62.47291 * 3 2 1 14 14 C 1.38106 * 120.00076 * 274.99584 * 13 3 2 15 15 N 1.30864 * 120.00169 * 5.14290 * 14 13 3 16 16 C 1.46746 * 120.00147 * 185.13679 * 14 13 3 17 17 C 1.38151 * 126.73805 * 187.87031 * 16 14 13 18 18 N 1.32574 * 108.24457 * 179.97438 * 17 16 14 19 19 C 1.33082 * 109.71142 * 359.97438 * 18 17 16 20 20 C 1.40733 * 131.84741 * 179.97438 * 19 18 17 21 21 C 1.36191 * 119.42345 * 180.02562 * 20 19 18 22 22 C 1.40406 * 119.62758 * 0.02562 * 21 20 19 23 23 F 1.35106 * 119.94267 * 179.97438 * 22 21 20 24 24 C 1.35366 * 120.11796 * 359.97357 * 22 21 20 25 25 N 1.36206 * 120.58958 * 359.78099 * 24 22 21 26 26 H 1.09005 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47475 * 299.99996 * 1 2 3 28 28 H 1.09004 * 109.47089 * 60.00788 * 1 2 3 29 29 H 1.09000 * 109.47475 * 240.00004 * 2 1 3 30 30 H 1.08997 * 109.46981 * 119.99600 * 2 1 3 31 31 H 0.97003 * 119.99968 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99970 * 95.00332 * 13 3 2 33 33 H 0.97000 * 120.00476 * 180.02562 * 15 14 13 34 34 H 1.07997 * 125.87637 * 359.94034 * 17 16 14 35 35 H 1.07997 * 120.28364 * 359.97438 * 20 19 18 36 36 H 1.07999 * 120.18729 * 179.97438 * 21 20 19 37 37 H 1.07992 * 119.70199 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6408 1.9690 -0.8670 5 6 3.5457 1.4430 -0.0614 6 1 4.1199 1.8227 0.7709 7 6 4.1903 0.9536 -1.1776 8 7 3.4956 0.4082 -2.1519 9 14 6.0506 1.0653 -1.3058 10 1 6.6565 -0.2060 -0.8347 11 1 6.4358 1.3030 -2.7202 12 1 6.5383 2.1877 -0.4647 13 7 1.6008 2.1157 1.2248 14 6 0.3498 2.6979 1.2823 15 7 -0.4817 2.5622 0.2809 16 6 -0.0472 3.4686 2.4663 17 6 -1.3023 3.9779 2.7382 18 7 -1.2507 4.6091 3.9029 19 6 -0.0189 4.5327 4.4007 20 6 0.5459 5.0309 5.5895 21 6 1.8622 4.8006 5.8527 22 6 2.6360 4.0712 4.9359 23 9 3.9425 3.8395 5.1904 24 6 2.0755 3.5998 3.7976 25 7 0.7586 3.8218 3.5299 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9491 0.0636 -2.9370 32 1 2.1888 2.1526 1.9954 33 1 -1.3603 2.9714 0.3211 34 1 -2.1751 3.8793 2.1098 35 1 -0.0590 5.5917 6.2866 36 1 2.3084 5.1777 6.7611 37 1 2.6768 3.0392 3.0973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = 63.370708 kcal Electronic energy + Delta-G solvation = -22937.326688 eV Core-core repulsion = 19437.636701 eV Total energy + Delta-G solvation = -3499.689987 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.20844 -43.98974 -39.11859 -38.30294 -35.78402 -34.72797 -33.55553 -32.21869 -30.96111 -29.67085 -28.68342 -25.45143 -24.93154 -24.24173 -23.35069 -21.91309 -21.25768 -19.77244 -18.98669 -18.42155 -17.54053 -17.48062 -17.21074 -16.69025 -16.43616 -16.28730 -16.08880 -15.44047 -15.21915 -14.91530 -14.81977 -14.45608 -14.21510 -13.48692 -13.09048 -12.96086 -12.85337 -12.80700 -12.77092 -12.53297 -12.13764 -11.96291 -11.83545 -11.47170 -11.42867 -10.94486 -10.52215 -10.11615 -9.90882 -9.12130 -8.72301 -8.15537 -6.30945 -0.57764 -0.28817 1.12754 1.17557 1.41525 1.42809 1.52747 2.23835 2.29493 2.32221 2.54021 2.80271 3.00242 3.14360 3.22536 3.49162 3.65590 3.96635 4.10929 4.35717 4.54469 4.63409 4.71226 4.72875 4.77891 4.79195 5.04697 5.20787 5.26153 5.30512 5.40468 5.58678 5.64245 5.69868 5.87139 5.90509 6.11834 6.45269 6.50174 6.84040 6.84828 7.38555 7.75863 8.90156 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.005527 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.356308 B = 5064.396594 C = 6545.599073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C 0.297 3.703 4 H 0.015 0.985 5 C -0.553 4.553 6 H 0.061 0.939 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.709 5.709 14 C 0.481 3.519 15 N -0.768 5.768 16 C -0.107 4.107 17 C 0.087 3.913 18 N -0.498 5.498 19 C 0.205 3.795 20 C -0.040 4.040 21 C -0.108 4.108 22 C 0.104 3.896 23 F -0.117 7.117 24 C -0.012 4.012 25 N -0.334 5.334 26 H 0.026 0.974 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.342 0.658 34 H 0.210 0.790 35 H 0.202 0.798 36 H 0.203 0.797 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 8.923 17.544 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.156 4.156 3 C 0.194 3.806 4 H 0.033 0.967 5 C -0.591 4.591 6 H 0.079 0.921 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.349 5.349 14 C 0.200 3.800 15 N -0.403 5.403 16 C -0.224 4.224 17 C -0.072 4.072 18 N -0.217 5.217 19 C -0.036 4.036 20 C -0.060 4.060 21 C -0.132 4.132 22 C 0.081 3.919 23 F -0.096 7.096 24 C -0.137 4.137 25 N -0.004 5.004 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.159 0.841 34 H 0.227 0.773 35 H 0.219 0.781 36 H 0.220 0.780 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.512 8.632 16.613 19.258 hybrid contribution 1.635 -0.268 -0.227 1.673 sum -2.877 8.364 16.387 18.621 Atomic orbital electron populations 1.21699 0.96026 0.97875 1.01524 1.21768 0.94697 0.99351 0.99773 1.18256 0.91992 0.88630 0.81739 0.96707 1.21586 0.91944 1.42497 1.03076 0.92122 1.25655 1.02887 0.94275 0.95186 1.70060 1.37144 1.39064 1.08477 0.85497 0.79837 0.78597 0.77401 1.19976 1.20968 1.19132 1.45185 1.12968 1.59432 1.17308 1.19013 0.87640 0.87275 0.86069 1.70051 1.09576 1.33859 1.26861 1.21621 0.93164 1.14763 0.92860 1.23221 0.95256 0.94724 0.93982 1.70557 1.16456 1.23863 1.10868 1.21756 0.87631 0.99209 0.94991 1.20713 0.94754 0.98199 0.92321 1.21577 0.92853 0.97884 1.00928 1.16876 0.79921 1.00718 0.94358 1.91600 1.31575 1.92779 1.93607 1.21503 0.84391 1.06918 1.00899 1.42413 1.07577 1.34285 1.16158 0.95451 0.93323 0.93636 0.92068 0.95733 0.92661 0.77349 0.84095 0.77295 0.78102 0.78024 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.01 8.35 71.98 0.60 -4.41 16 2 C -0.12 -5.79 5.48 30.60 0.17 -5.62 16 3 C 0.30 15.14 2.22 44.25 0.10 15.23 16 4 H 0.02 0.89 7.63 -2.38 -0.02 0.87 16 5 C -0.55 -29.54 8.67 25.60 0.22 -29.32 16 6 H 0.06 3.09 7.72 -2.91 -0.02 3.07 16 7 C 0.02 1.12 5.35 84.66 0.45 1.57 16 8 N -0.91 -52.06 11.51 21.45 0.25 -51.81 16 9 Si 0.96 42.52 29.54 68.60 2.03 44.55 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 13 N -0.71 -29.90 5.05 -322.86 -1.63 -31.53 16 14 C 0.48 18.39 6.49 135.83 0.88 19.27 16 15 N -0.77 -30.02 9.77 -51.50 -0.50 -30.53 16 16 C -0.11 -3.41 7.00 40.37 0.28 -3.13 16 17 C 0.09 2.41 11.34 84.56 0.96 3.37 16 18 N -0.50 -13.56 11.26 -192.80 -2.17 -15.73 16 19 C 0.21 5.05 7.78 134.03 1.04 6.09 16 20 C -0.04 -0.59 10.10 22.40 0.23 -0.37 16 21 C -0.11 -1.36 10.05 22.32 0.22 -1.14 16 22 C 0.10 2.05 7.26 22.13 0.16 2.21 16 23 F -0.12 -2.42 17.26 44.97 0.78 -1.65 16 24 C -0.01 -0.30 10.31 83.35 0.86 0.56 16 25 N -0.33 -9.44 2.96 -339.66 -1.00 -10.44 16 26 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.05 2.05 5.55 -2.39 -0.01 2.03 16 28 H 0.04 2.10 7.45 -2.38 -0.02 2.08 16 29 H 0.06 3.40 6.26 -2.39 -0.01 3.39 16 30 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.39 14.96 4.89 -92.71 -0.45 14.51 16 33 H 0.34 11.18 7.71 -92.71 -0.71 10.47 16 34 H 0.21 4.53 7.49 -2.91 -0.02 4.51 16 35 H 0.20 1.46 8.06 -2.91 -0.02 1.43 16 36 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.16 4.67 5.21 -2.91 -0.02 4.65 16 Total: -1.00 -66.65 309.66 3.89 -62.76 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.03 Total: 30.05 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.18 Total: 4.32 kcal Atomic # 7 Polarization: -134.97 SS G_CDS: -5.06 Total: -140.04 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -66.65 3.89 -62.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.135 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds