Wall clock time and date at job start Tue Mar 31 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47225 * 2 1 4 4 C 1.50707 * 109.47027 * 239.99708 * 2 1 3 5 5 O 1.21284 * 119.99908 * 240.00225 * 4 2 1 6 6 N 1.34768 * 119.99811 * 60.00460 * 4 2 1 7 7 C 1.40156 * 120.00143 * 179.97438 * 6 4 2 8 8 C 1.40411 * 125.97049 * 0.03124 * 7 6 4 9 9 C 1.35241 * 107.86611 * 179.75956 * 8 7 6 10 10 N 1.34965 * 107.86302 * 0.38043 * 9 8 7 11 11 C 1.46495 * 125.97869 * 179.87777 * 10 9 8 12 12 C 1.50702 * 109.47571 * 124.71943 * 11 10 9 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31221 * 125.97787 * 180.02562 * 7 6 4 21 21 N 1.46499 * 109.46701 * 119.99986 * 2 1 3 22 22 C 1.34435 * 126.82584 * 35.00172 * 21 2 1 23 23 N 1.30825 * 108.07749 * 179.97438 * 22 21 2 24 24 C 1.33243 * 109.83073 * 0.02562 * 23 22 21 25 25 N 1.30707 * 108.94573 * 359.75004 * 24 23 22 26 26 H 1.09002 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47202 * 300.00557 * 1 2 3 28 28 H 1.09004 * 109.46559 * 60.00086 * 1 2 3 29 29 H 0.97004 * 120.00026 * 359.97438 * 6 4 2 30 30 H 1.07998 * 126.06914 * 0.02562 * 8 7 6 31 31 H 1.08000 * 126.06933 * 180.24554 * 9 8 7 32 32 H 1.09000 * 109.47378 * 4.71603 * 11 10 9 33 33 H 1.09001 * 109.47153 * 244.71723 * 11 10 9 34 34 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 35 35 H 1.08000 * 125.95901 * 359.92496 * 22 21 2 36 36 H 1.07998 * 125.52626 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1744 -0.9104 -3.5989 8 6 2.9849 -2.0569 -3.6163 9 6 3.2113 -2.3854 -4.9085 10 7 2.5779 -1.4797 -5.6830 11 6 2.5639 -1.4596 -7.1478 12 6 1.1384 -1.4590 -7.6367 13 1 0.3243 -1.4726 -6.9271 14 6 0.8736 -1.4421 -8.9896 15 7 -0.3704 -1.4471 -9.4163 16 14 2.2818 -1.4192 -10.2168 17 1 2.6441 -0.0132 -10.5282 18 1 3.4569 -2.1159 -9.6348 19 1 1.8638 -2.1104 -11.4629 20 7 1.9312 -0.5656 -4.8414 21 7 2.0183 -0.6906 1.1962 22 6 1.4557 -1.7519 1.7999 23 7 2.1936 -2.0700 2.8323 24 6 3.2308 -1.2381 2.9201 25 7 3.1698 -0.3786 1.9372 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 1.1489 0.5385 -2.5435 30 1 3.3574 -2.5853 -2.7512 31 1 3.7970 -3.2226 -5.2585 32 1 3.0781 -2.3423 -7.5282 33 1 3.0704 -0.5625 -7.5037 34 1 -0.5567 -1.4392 -10.3682 35 1 0.5518 -2.2538 1.4876 36 1 3.9993 -1.2712 3.6781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319660184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:17 Heat of formation + Delta-G solvation = 154.290017 kcal Electronic energy + Delta-G solvation = -22018.209976 eV Core-core repulsion = 18542.382508 eV Total energy + Delta-G solvation = -3475.827468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.34649 -40.91949 -39.60220 -35.38455 -35.07461 -33.37266 -31.63936 -31.38368 -30.23616 -29.50295 -27.34102 -25.67247 -23.42993 -22.39247 -22.09611 -21.28884 -20.30700 -19.74409 -17.89771 -17.33874 -17.06323 -16.60916 -15.86405 -15.65858 -15.33419 -15.01377 -14.63237 -14.41489 -14.25297 -13.73521 -13.27337 -13.10049 -12.94914 -12.69646 -12.62740 -12.47512 -12.18789 -11.85179 -11.26990 -10.95963 -10.65640 -10.50298 -10.22590 -10.17193 -10.05827 -9.94591 -9.65182 -9.60215 -8.82773 -8.34333 -7.68849 -6.29676 -4.32569 1.33724 1.83525 1.97809 2.57718 2.69723 2.81771 3.11744 3.16717 3.19904 3.47400 3.55265 3.98049 4.11537 4.17351 4.22249 4.33555 4.58480 4.90729 4.95193 4.98225 5.10126 5.31366 5.41973 5.55915 5.97333 5.99307 6.21372 6.26492 6.31692 6.38791 6.52650 6.55147 7.12398 7.17332 7.37474 7.69514 7.87096 7.91155 8.25541 8.41543 8.78847 9.25021 10.82901 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.041133 B = 0.002972 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.551345 B = 9419.458803 C = 9761.575819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.136 0.864 4 C 0.507 3.493 5 O -0.498 6.498 6 N -0.622 5.622 7 C 0.257 3.743 8 C -0.283 4.283 9 C 0.054 3.946 10 N -0.316 5.316 11 C 0.231 3.769 12 C -0.536 4.536 13 H 0.086 0.914 14 C 0.077 3.923 15 N -0.887 5.887 16 Si 0.874 3.126 17 H -0.271 1.271 18 H -0.265 1.265 19 H -0.280 1.280 20 N -0.292 5.292 21 N -0.364 5.364 22 C 0.272 3.728 23 N -0.546 5.546 24 C 0.200 3.800 25 N -0.313 5.313 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.413 0.587 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.269 0.731 35 H 0.216 0.784 36 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 2.921 19.204 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.154 0.846 4 C 0.290 3.710 5 O -0.370 6.370 6 N -0.270 5.270 7 C 0.004 3.996 8 C -0.314 4.314 9 C -0.095 4.095 10 N -0.098 5.098 11 C 0.112 3.888 12 C -0.574 4.574 13 H 0.104 0.896 14 C -0.127 4.127 15 N -0.524 5.524 16 Si 0.700 3.300 17 H -0.197 1.197 18 H -0.190 1.190 19 H -0.205 1.205 20 N -0.123 5.123 21 N -0.154 5.154 22 C -0.025 4.025 23 N -0.273 5.273 24 C -0.103 4.103 25 N -0.140 5.140 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.249 0.751 30 H 0.177 0.823 31 H 0.187 0.813 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.298 3.375 18.276 18.875 hybrid contribution 0.573 -0.228 -0.652 0.897 sum 3.871 3.147 17.624 18.316 Atomic orbital electron populations 1.22242 0.89621 1.05031 1.05466 1.21110 0.96582 0.97944 0.80518 0.84632 1.20543 0.81285 0.85359 0.83807 1.90727 1.35613 1.24994 1.85668 1.42269 1.51442 1.30779 1.02549 1.19038 0.99169 0.94946 0.86462 1.21516 1.10848 1.01789 0.97258 1.22569 0.99557 0.96437 0.90964 1.48654 1.35146 1.18676 1.07311 1.20093 1.00370 0.98340 0.69968 1.21086 0.90135 1.52928 0.93290 0.89633 1.24828 0.95780 0.94179 0.97917 1.69866 1.18270 1.48965 1.15277 0.86891 0.82541 0.79052 0.81479 1.19666 1.18956 1.20530 1.77397 1.20882 1.16390 0.97628 1.50042 1.19011 1.24778 1.21572 1.25942 0.99180 0.87613 0.89738 1.70578 1.07265 1.28520 1.20925 1.25995 0.97214 0.90091 0.97002 1.78059 1.02438 1.25453 1.08020 0.90330 0.89628 0.88510 0.75055 0.82269 0.81254 0.92797 0.94360 0.92107 0.76763 0.76638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 8.75 37.16 0.33 -0.48 16 2 C 0.15 1.23 3.77 -69.08 -0.26 0.97 16 3 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.51 6.39 7.19 -10.99 -0.08 6.31 16 5 O -0.50 -8.28 13.55 5.55 0.08 -8.21 16 6 N -0.62 -8.29 5.34 -11.13 -0.06 -8.35 16 7 C 0.26 4.77 8.11 -154.39 -1.25 3.52 16 8 C -0.28 -5.28 9.61 -39.83 -0.38 -5.66 16 9 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 10 N -0.32 -6.89 3.67 -62.56 -0.23 -7.12 16 11 C 0.23 5.31 5.33 -5.20 -0.03 5.28 16 12 C -0.54 -14.72 9.79 -34.44 -0.34 -15.05 16 13 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 14 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 16 Si 0.87 19.71 27.47 -169.99 -4.67 15.04 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 N -0.29 -6.33 12.42 31.44 0.39 -5.94 16 21 N -0.36 -3.91 3.04 -57.24 -0.17 -4.08 16 22 C 0.27 2.76 11.77 -90.65 -1.07 1.70 16 23 N -0.55 -6.48 11.19 -15.83 -0.18 -6.65 16 24 C 0.20 2.21 13.03 -91.82 -1.20 1.01 16 25 N -0.31 -3.90 12.70 29.29 0.37 -3.53 16 26 H 0.08 0.38 7.22 -51.93 -0.38 0.00 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.35 7.56 -51.93 -0.39 -0.04 16 29 H 0.41 4.12 8.24 -40.82 -0.34 3.79 16 30 H 0.16 2.94 5.92 -52.49 -0.31 2.63 16 31 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.05 1.14 7.12 -51.93 -0.37 0.77 16 33 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.22 1.38 7.32 -52.49 -0.38 0.99 16 36 H 0.22 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 318.05 15.07 4.79 4.79 Total: -1.00 -36.87 318.05 -7.32 -44.19 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.84 Total: 4.66 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -4.57 Total: 0.42 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.90 Total: -60.91 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.21 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.67 Total: 15.04 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.87 -7.32 -44.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319660184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.483 kcal (2) G-P(sol) polarization free energy of solvation -36.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds